RNA–Protein interactions for RNA: ENSMUST00000088349.2

Col9a1-202, Transcript of Collagen alpha-1(IX) chain, mousemouse

TSL 1 (best) BASIC

Gene Col9a1, Length 3,059 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1-202ENSMUST00000088349 NischQ80TM9 1593 aa21.33■■□□□ 1.01
Col9a1-202ENSMUST00000088349 Rhox8Q6VSS7 320 aa20.72■□□□□ 0.91
Col9a1-202ENSMUST00000088349 Gm35339A0A140LHH9 1649 aa20.69■□□□□ 0.9
Col9a1-202ENSMUST00000088349 Abcc9P70170 1546 aa20.52■□□□□ 0.87
Col9a1-202ENSMUST00000088349 Abcc8B2RUS7 1588 aa20.12■□□□□ 0.81
Col9a1-202ENSMUST00000088349 Rtl1Q7M732 1744 aa19.65■□□□□ 0.74
Col9a1-202ENSMUST00000088349 Ccdc180J3QNE4 1664 aa19.55■□□□□ 0.72
Col9a1-202ENSMUST00000088349 Rpgrip1Q9EPQ2 1331 aa19.3■□□□□ 0.68
Col9a1-202ENSMUST00000088349 Ccdc136Q3TVA9 1136 aa19.25■□□□□ 0.67
Col9a1-202ENSMUST00000088349 Ehmt2Q9Z148 1263 aaKnown RBP19.23■□□□□ 0.67
Col9a1-202ENSMUST00000088349 Zcchc6Q5BLK4 1491 aaKnown RBP19.07■□□□□ 0.64
Col9a1-202ENSMUST00000088349 Acin1Q9JIX8 1338 aaKnown RBP19.01■□□□□ 0.63
Col9a1-202ENSMUST00000088349 ScribQ80U72 1612 aa18.96■□□□□ 0.63
Col9a1-202ENSMUST00000088349 HrcG5E8J6 738 aa18.75■□□□□ 0.59
Col9a1-202ENSMUST00000088349 Rb1cc1Q9ESK9 1588 aa18.7■□□□□ 0.58
Col9a1-202ENSMUST00000088349 Kdm5dQ62240 1548 aa18.61■□□□□ 0.57
Col9a1-202ENSMUST00000088349 Trim41Q5NCC3 630 aa18.57■□□□□ 0.56
Col9a1-202ENSMUST00000088349 Dcaf1Q80TR8 1506 aa18.57■□□□□ 0.56
Col9a1-202ENSMUST00000088349 Pcgf6Q99NA9 353 aa18.54■□□□□ 0.56
Col9a1-202ENSMUST00000088349 NacadQ5SWP3 1504 aa18.44■□□□□ 0.54
Col9a1-202ENSMUST00000088349 Baz1aO88379 1555 aa18.35■□□□□ 0.53
Col9a1-202ENSMUST00000088349 Cngb1E1AZ71 1325 aa18.35■□□□□ 0.53
Col9a1-202ENSMUST00000088349 Gab3Q8BSM5 595 aa18.32■□□□□ 0.52
Col9a1-202ENSMUST00000088349 Supt5hO55201 1082 aaKnown RBP18.22■□□□□ 0.51
Col9a1-202ENSMUST00000088349 Chic1Q8CBW7 227 aa18.1■□□□□ 0.49
Col9a1-202ENSMUST00000088349 Cep164Q5DU05 1446 aa18.07■□□□□ 0.48
Col9a1-202ENSMUST00000088349 Sycp2Q9CUU3 1500 aa18.04■□□□□ 0.48
Col9a1-202ENSMUST00000088349 Zeb1Q64318 1117 aa18.03■□□□□ 0.48
Col9a1-202ENSMUST00000088349 Esf1Q3V1V3 845 aaKnown RBP18.01■□□□□ 0.47
Col9a1-202ENSMUST00000088349 Smarca2Q6DIC0 1577 aa17.9■□□□□ 0.46
Col9a1-202ENSMUST00000088349 Cecr2E9Q2Z1 1453 aa17.85■□□□□ 0.45
Col9a1-202ENSMUST00000088349 Neurod1Q60867 357 aa17.85■□□□□ 0.45
Col9a1-202ENSMUST00000088349 Rsf1E9PWW9 1441 aaKnown RBP17.84■□□□□ 0.45
Col9a1-202ENSMUST00000088349 Crybg2B7ZCC2 1516 aa17.84■□□□□ 0.45
Col9a1-202ENSMUST00000088349 Mier1Q5UAK0 511 aa17.78■□□□□ 0.44
Col9a1-202ENSMUST00000088349 Ccdc88bQ4QRL3 1481 aa17.73■□□□□ 0.43
Col9a1-202ENSMUST00000088349 BicraF8VPZ9 1578 aa17.72■□□□□ 0.43
Col9a1-202ENSMUST00000088349 NefmP08553 848 aa17.7■□□□□ 0.42
Col9a1-202ENSMUST00000088349 Brd4Q9ESU6 1400 aaKnown RBP17.67■□□□□ 0.42
Col9a1-202ENSMUST00000088349 Sall2Q9QX96 1004 aa17.64■□□□□ 0.41
Col9a1-202ENSMUST00000088349 Myt1lP97500 1187 aa17.62■□□□□ 0.41
Col9a1-202ENSMUST00000088349 Synj1Q8CHC4 1574 aa17.57■□□□□ 0.4
Col9a1-202ENSMUST00000088349 UbtfP25976 765 aaKnown RBP17.56■□□□□ 0.4
Col9a1-202ENSMUST00000088349 Golga3P55937 1487 aa17.54■□□□□ 0.4
Col9a1-202ENSMUST00000088349 Wdr66E9Q743 1299 aa17.51■□□□□ 0.39
Col9a1-202ENSMUST00000088349 Ppargc1bQ8VHJ7 1014 aa17.43■□□□□ 0.38
Col9a1-202ENSMUST00000088349 CftrP26361 1476 aa17.41■□□□□ 0.38
Col9a1-202ENSMUST00000088349 Las1lA2BE28 776 aaKnown RBP17.4■□□□□ 0.38
Col9a1-202ENSMUST00000088349 Npm2Q80W85 207 aa17.4■□□□□ 0.38
Col9a1-202ENSMUST00000088349 Aebp2Q9Z248 504 aaKnown RBP17.37■□□□□ 0.37
Col9a1-202ENSMUST00000088349 Csrnp3P59055 597 aa17.31■□□□□ 0.36
Col9a1-202ENSMUST00000088349 Il27Q8K3I6 234 aa17.31■□□□□ 0.36
Col9a1-202ENSMUST00000088349 Anks4bQ8K3X6 423 aa17.26■□□□□ 0.35
Col9a1-202ENSMUST00000088349 1700123L14RikQ3V2K7 440 aa17.23■□□□□ 0.35
Col9a1-202ENSMUST00000088349 Plekhg3Q4VAC9 1341 aa17.23■□□□□ 0.35
Col9a1-202ENSMUST00000088349 Cc2d2aQ8CFW7 1633 aa17.2■□□□□ 0.34
Col9a1-202ENSMUST00000088349 Ap3b1Q9Z1T1 1105 aa17.2■□□□□ 0.34
Col9a1-202ENSMUST00000088349 Smarca4Q3TKT4 1613 aaKnown RBP17.19■□□□□ 0.34
Col9a1-202ENSMUST00000088349 Cdk11bP24788 784 aaKnown RBP17.19■□□□□ 0.34
Col9a1-202ENSMUST00000088349 Nop58Q6DFW4 536 aaKnown RBP17.18■□□□□ 0.34
Col9a1-202ENSMUST00000088349 ClspnQ80YR7 1315 aa17.14■□□□□ 0.33
Col9a1-202ENSMUST00000088349 Cttnbp2B9EJA2 1648 aa17.11■□□□□ 0.33
Col9a1-202ENSMUST00000088349 TonslQ6NZL6 1363 aa17.09■□□□□ 0.33
Col9a1-202ENSMUST00000088349 Top2bQ64511 1612 aa17.09■□□□□ 0.33
Col9a1-202ENSMUST00000088349 Rapgef2Q8CHG7 1496 aa17.07■□□□□ 0.32
Col9a1-202ENSMUST00000088349 Pds5bQ4VA53 1446 aaKnown RBP17.06■□□□□ 0.32
Col9a1-202ENSMUST00000088349 Iqgap2Q3UQ44 1575 aa17.06■□□□□ 0.32
Col9a1-202ENSMUST00000088349 Atad2bE9Q166 1460 aaKnown RBP17.05■□□□□ 0.32
Col9a1-202ENSMUST00000088349 Gm38655A0A286YDK6 273 aa17.04■□□□□ 0.32
Col9a1-202ENSMUST00000088349 Cep162Q6ZQ06 1403 aa17.02■□□□□ 0.32
Col9a1-202ENSMUST00000088349 Clip1Q922J3 1391 aa16.97■□□□□ 0.31
Col9a1-202ENSMUST00000088349 Fmn1Q05860 1466 aa16.97■□□□□ 0.31
Col9a1-202ENSMUST00000088349 Eid3Q3V124 375 aa16.93■□□□□ 0.3
Col9a1-202ENSMUST00000088349 Top2aQ01320 1528 aaKnown RBP16.89■□□□□ 0.29
Col9a1-202ENSMUST00000088349 Aplp2Q06335 707 aa16.86■□□□□ 0.29
Col9a1-202ENSMUST00000088349 CenpbP27790 599 aa16.84■□□□□ 0.29
Col9a1-202ENSMUST00000088349 Ercc6F8VPZ5 1481 aa16.83■□□□□ 0.29
Col9a1-202ENSMUST00000088349 Frmpd1A2AKB4 1549 aa16.83■□□□□ 0.28
Col9a1-202ENSMUST00000088349 Lmod2Q3UHZ5 550 aa16.8■□□□□ 0.28
Col9a1-202ENSMUST00000088349 Kif15Q6P9L6 1387 aa16.79■□□□□ 0.28
Col9a1-202ENSMUST00000088349 Dnajc5bQ9CQ94 199 aa16.79■□□□□ 0.28
Col9a1-202ENSMUST00000088349 Ubl4bQ9CQ84 188 aa16.79■□□□□ 0.28
Col9a1-202ENSMUST00000088349 PtprkP35822 1457 aa16.77■□□□□ 0.28
Col9a1-202ENSMUST00000088349 Mapk8ip2Q9ERE9 830 aa16.77■□□□□ 0.27
Col9a1-202ENSMUST00000088349 Ncapd3Q6ZQK0 1506 aa16.73■□□□□ 0.27
Col9a1-202ENSMUST00000088349 Fam50aQ9WV03 339 aaKnown RBP16.72■□□□□ 0.27
Col9a1-202ENSMUST00000088349 Wdr62Q3U3T8 1523 aa16.72■□□□□ 0.27
Col9a1-202ENSMUST00000088349 Setd5Q5XJV7 1441 aa16.67■□□□□ 0.26
Col9a1-202ENSMUST00000088349 Hnrnpul2Q00PI9 745 aaKnown RBP16.65■□□□□ 0.26
Col9a1-202ENSMUST00000088349 SafbD3YXK2 937 aaKnown RBP16.64■□□□□ 0.25
Col9a1-202ENSMUST00000088349 Arhgap35Q91YM2 1499 aa16.63■□□□□ 0.25
Col9a1-202ENSMUST00000088349 Eea1Q8BL66 1411 aa16.61■□□□□ 0.25
Col9a1-202ENSMUST00000088349 Npm1Q61937 292 aaKnown RBP16.6■□□□□ 0.25
Col9a1-202ENSMUST00000088349 Arap1Q4LDD4 1452 aa16.58■□□□□ 0.25
Col9a1-202ENSMUST00000088349 Phldb1Q6PDH0 1371 aaKnown RBP16.57■□□□□ 0.24
Col9a1-202ENSMUST00000088349 BlmO88700 1416 aa16.56■□□□□ 0.24
Col9a1-202ENSMUST00000088349 Eif4g1Q6NZJ6 1600 aaKnown RBP16.55■□□□□ 0.24
Col9a1-202ENSMUST00000088349 NclP09405 707 aaKnown RBP16.55■□□□□ 0.24
Col9a1-202ENSMUST00000088349 Ube2uB1AUC4 352 aa16.54■□□□□ 0.24
Col9a1-202ENSMUST00000088349 Cux2P70298 1426 aa16.51■□□□□ 0.23
Retrieved 100 of 22,080 RNA–protein pairs in 27.2 ms