RNA–Protein interactions for RNA: ENSMUST00000086923.5

Col17a1-202, Transcript of Collagen alpha-1(XVII) chain, mousemouse

APPRIS P3 TSL 1 (best) BASIC

Gene Col17a1, Length 5,477 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1-202ENSMUST00000086923 Rpgrip1Q9EPQ2 1331 aa27.83■■■□□ 2.04
Col17a1-202ENSMUST00000086923 Rhox8Q6VSS7 320 aa27.53■■■□□ 2
Col17a1-202ENSMUST00000086923 Las1lA2BE28 776 aaKnown RBP27.22■■□□□ 1.95
Col17a1-202ENSMUST00000086923 Cngb1E1AZ71 1325 aa26.79■■□□□ 1.88
Col17a1-202ENSMUST00000086923 Ehmt2Q9Z148 1263 aaKnown RBP26.42■■□□□ 1.82
Col17a1-202ENSMUST00000086923 Pelp1Q9DBD5 1123 aaKnown RBP26.08■■□□□ 1.77
Col17a1-202ENSMUST00000086923 CenpbP27790 599 aa25.87■■□□□ 1.73
Col17a1-202ENSMUST00000086923 Wdr66E9Q743 1299 aa25.72■■□□□ 1.71
Col17a1-202ENSMUST00000086923 Myt1Q8CFC2 1127 aa25.67■■□□□ 1.7
Col17a1-202ENSMUST00000086923 Zeb1Q64318 1117 aa25.66■■□□□ 1.7
Col17a1-202ENSMUST00000086923 Amer1Q7TS75 1132 aa25.66■■□□□ 1.7
Col17a1-202ENSMUST00000086923 Acin1Q9JIX8 1338 aaKnown RBP25.46■■□□□ 1.67
Col17a1-202ENSMUST00000086923 Pcgf6Q99NA9 353 aa25.2■■□□□ 1.62
Col17a1-202ENSMUST00000086923 DiexfQ8BTT6 772 aaKnown RBP25.16■■□□□ 1.62
Col17a1-202ENSMUST00000086923 Ttbk1Q6PCN3 1308 aa24.84■■□□□ 1.57
Col17a1-202ENSMUST00000086923 Cdk11bP24788 784 aaKnown RBP24.62■■□□□ 1.53
Col17a1-202ENSMUST00000086923 NefmP08553 848 aa24.61■■□□□ 1.53
Col17a1-202ENSMUST00000086923 Supt5hO55201 1082 aaKnown RBP24.42■■□□□ 1.5
Col17a1-202ENSMUST00000086923 4930567H17RikQ3V0K5 233 aa24.42■■□□□ 1.5
Col17a1-202ENSMUST00000086923 4933416C03RikQ3V063 378 aa24.4■■□□□ 1.5
Col17a1-202ENSMUST00000086923 Stra8P70278 393 aa24.39■■□□□ 1.5
Col17a1-202ENSMUST00000086923 Ccdc136Q3TVA9 1136 aa24.31■■□□□ 1.48
Col17a1-202ENSMUST00000086923 Gab3Q8BSM5 595 aa24.28■■□□□ 1.48
Col17a1-202ENSMUST00000086923 Nop58Q6DFW4 536 aaKnown RBP24.27■■□□□ 1.48
Col17a1-202ENSMUST00000086923 Tnnt3Q9QZ47 272 aa24.21■■□□□ 1.47
Col17a1-202ENSMUST00000086923 Rtl5Q5DTT4 599 aa24.19■■□□□ 1.46
Col17a1-202ENSMUST00000086923 Trim41Q5NCC3 630 aa24.13■■□□□ 1.45
Col17a1-202ENSMUST00000086923 Ube2uB1AUC4 352 aa24.1■■□□□ 1.45
Col17a1-202ENSMUST00000086923 Slc24a1Q91WD8 1130 aa24.09■■□□□ 1.45
Col17a1-202ENSMUST00000086923 Neurod1Q60867 357 aa24.04■■□□□ 1.44
Col17a1-202ENSMUST00000086923 HrcG5E8J6 738 aa23.87■■□□□ 1.41
Col17a1-202ENSMUST00000086923 UbtfP25976 765 aaKnown RBP23.85■■□□□ 1.41
Col17a1-202ENSMUST00000086923 Csrnp3P59055 597 aa23.78■■□□□ 1.4
Col17a1-202ENSMUST00000086923 Ppargc1bQ8VHJ7 1014 aa23.76■■□□□ 1.39
Col17a1-202ENSMUST00000086923 Gm38655A0A286YDK6 273 aa23.69■■□□□ 1.38
Col17a1-202ENSMUST00000086923 Aplp2Q06335 707 aa23.67■■□□□ 1.38
Col17a1-202ENSMUST00000086923 Anp32aO35381 247 aa23.66■■□□□ 1.38
Col17a1-202ENSMUST00000086923 Anks4bQ8K3X6 423 aa23.63■■□□□ 1.37
Col17a1-202ENSMUST00000086923 Myt1lP97500 1187 aa23.62■■□□□ 1.37
Col17a1-202ENSMUST00000086923 Ccdc180J3QNE4 1664 aa23.59■■□□□ 1.37
Col17a1-202ENSMUST00000086923 Esf1Q3V1V3 845 aaKnown RBP23.58■■□□□ 1.37
Col17a1-202ENSMUST00000086923 Eif5bQ05D44 1216 aaKnown RBP23.54■■□□□ 1.36
Col17a1-202ENSMUST00000086923 Npm2Q80W85 207 aa23.51■■□□□ 1.35
Col17a1-202ENSMUST00000086923 DaxxO35613 739 aa23.49■■□□□ 1.35
Col17a1-202ENSMUST00000086923 Bcl11aQ9QYE3 773 aa23.44■■□□□ 1.34
Col17a1-202ENSMUST00000086923 1700123L14RikQ3V2K7 440 aa23.39■■□□□ 1.33
Col17a1-202ENSMUST00000086923 NrdcQ8BHG1 1161 aa23.38■■□□□ 1.33
Col17a1-202ENSMUST00000086923 NeflP08551 543 aa23.38■■□□□ 1.33
Col17a1-202ENSMUST00000086923 ClspnQ80YR7 1315 aa23.24■■□□□ 1.31
Col17a1-202ENSMUST00000086923 TonslQ6NZL6 1363 aa23.22■■□□□ 1.31
Col17a1-202ENSMUST00000086923 Sall2Q9QX96 1004 aa23.19■■□□□ 1.3
Col17a1-202ENSMUST00000086923 NclP09405 707 aaKnown RBP23.15■■□□□ 1.3
Col17a1-202ENSMUST00000086923 Mier1Q5UAK0 511 aa23.14■■□□□ 1.29
Col17a1-202ENSMUST00000086923 Ythdc1E9Q5K9 736 aaKnown RBP23.07■■□□□ 1.28
Col17a1-202ENSMUST00000086923 Ccdc9Q8VC31 543 aaKnown RBP23.01■■□□□ 1.27
Col17a1-202ENSMUST00000086923 NischQ80TM9 1593 aa22.99■■□□□ 1.27
Col17a1-202ENSMUST00000086923 Rtl1Q7M732 1744 aa22.99■■□□□ 1.27
Col17a1-202ENSMUST00000086923 Fam71e1A1L3C1 212 aa22.97■■□□□ 1.27
Col17a1-202ENSMUST00000086923 Anp32bQ9EST5 272 aaKnown RBP22.94■■□□□ 1.26
Col17a1-202ENSMUST00000086923 Mapk8ip2Q9ERE9 830 aa22.93■■□□□ 1.26
Col17a1-202ENSMUST00000086923 Hsp90aa1P07901 733 aaKnown RBP22.85■■□□□ 1.25
Col17a1-202ENSMUST00000086923 Ppp4r2Q0VGB7 417 aa22.76■■□□□ 1.23
Col17a1-202ENSMUST00000086923 Calr4Q3TQS0 420 aa22.75■■□□□ 1.23
Col17a1-202ENSMUST00000086923 Fam50aQ9WV03 339 aaKnown RBP22.68■■□□□ 1.22
Col17a1-202ENSMUST00000086923 Ap3b1Q9Z1T1 1105 aa22.62■■□□□ 1.21
Col17a1-202ENSMUST00000086923 Wdr43Q6ZQL4 677 aaKnown RBP22.59■■□□□ 1.21
Col17a1-202ENSMUST00000086923 Lmod3E9QA62 571 aa22.54■■□□□ 1.2
Col17a1-202ENSMUST00000086923 Irx3P81067 507 aa22.53■■□□□ 1.2
Col17a1-202ENSMUST00000086923 Dcaf1Q80TR8 1506 aa22.51■■□□□ 1.19
Col17a1-202ENSMUST00000086923 Ccdc27Q3V036 639 aa22.51■■□□□ 1.19
Col17a1-202ENSMUST00000086923 ArxO35085 564 aa22.5■■□□□ 1.19
Col17a1-202ENSMUST00000086923 CatipB9EKE5 520 aa22.4■■□□□ 1.18
Col17a1-202ENSMUST00000086923 PrkcshO08795 521 aa22.31■■□□□ 1.16
Col17a1-202ENSMUST00000086923 Upf2A2AT37 1269 aaKnown RBP22.27■■□□□ 1.16
Col17a1-202ENSMUST00000086923 Trim44Q9QXA7 346 aa22.24■■□□□ 1.15
Col17a1-202ENSMUST00000086923 Pknox2Q8BG99 474 aa22.23■■□□□ 1.15
Col17a1-202ENSMUST00000086923 SafbD3YXK2 937 aaKnown RBP22.19■■□□□ 1.14
Col17a1-202ENSMUST00000086923 CanxP35564 591 aaKnown RBP22.17■■□□□ 1.14
Col17a1-202ENSMUST00000086923 Eid3Q3V124 375 aa22.15■■□□□ 1.14
Col17a1-202ENSMUST00000086923 Hnrnpul2Q00PI9 745 aaKnown RBP22.11■■□□□ 1.13
Col17a1-202ENSMUST00000086923 Aebp2Q9Z248 504 aaKnown RBP22.09■■□□□ 1.13
Col17a1-202ENSMUST00000086923 Taok2Q6ZQ29 1240 aa22.06■■□□□ 1.12
Col17a1-202ENSMUST00000086923 Zbtb7cQ8VCZ7 619 aa22.04■■□□□ 1.12
Col17a1-202ENSMUST00000086923 Gtf3c3Q3TMP1 882 aa22.03■■□□□ 1.12
Col17a1-202ENSMUST00000086923 Plekhg3Q4VAC9 1341 aa22.03■■□□□ 1.12
Col17a1-202ENSMUST00000086923 Tnnt2P50752 301 aa22.03■■□□□ 1.12
Col17a1-202ENSMUST00000086923 DekQ7TNV0 380 aaKnown RBP22.03■■□□□ 1.12
Col17a1-202ENSMUST00000086923 AU015836B2RUM3 263 aa22.02■■□□□ 1.12
Col17a1-202ENSMUST00000086923 Os9Q8K2C7 672 aa22■■□□□ 1.11
Col17a1-202ENSMUST00000086923 Vsig10D3YX43 558 aa21.97■■□□□ 1.11
Col17a1-202ENSMUST00000086923 Hdac5Q9Z2V6 1113 aa21.96■■□□□ 1.11
Col17a1-202ENSMUST00000086923 Mrs2Q5NCE8 434 aa21.92■■□□□ 1.1
Col17a1-202ENSMUST00000086923 Il27Q8K3I6 234 aa21.9■■□□□ 1.1
Col17a1-202ENSMUST00000086923 Polr3glQ8R0C0 218 aa21.88■■□□□ 1.09
Col17a1-202ENSMUST00000086923 Htatsf1Q8BGC0 757 aa21.86■■□□□ 1.09
Col17a1-202ENSMUST00000086923 Hsp90ab1P11499 724 aaKnown RBP21.85■■□□□ 1.09
Col17a1-202ENSMUST00000086923 P3h3Q8CG70 732 aa21.78■■□□□ 1.08
Col17a1-202ENSMUST00000086923 Trim30dE9PWL0 497 aa21.76■■□□□ 1.07
Col17a1-202ENSMUST00000086923 Supt16hQ920B9 1047 aa21.76■■□□□ 1.07
Col17a1-202ENSMUST00000086923 PtmaP26350 111 aa21.74■■□□□ 1.07
Retrieved 100 of 22,080 RNA–protein pairs in 98.5 ms