RNA–Protein interactions for RNA: ENSMUST00000056925.15

Col6a3-201, Transcript of Collagen, type VI, alpha 3, mousemouse

TSL 5 BASIC

Gene Col6a3, Length 10,106 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a3-201ENSMUST00000056925 Rpgrip1Q9EPQ2 1331 aa17.48■□□□□ 0.39
Col6a3-201ENSMUST00000056925 Las1lA2BE28 776 aaKnown RBP17.36■□□□□ 0.37
Col6a3-201ENSMUST00000056925 Rhox8Q6VSS7 320 aa17.33■□□□□ 0.37
Col6a3-201ENSMUST00000056925 Cngb1E1AZ71 1325 aa17.24■□□□□ 0.35
Col6a3-201ENSMUST00000056925 Pelp1Q9DBD5 1123 aaKnown RBP16.92■□□□□ 0.3
Col6a3-201ENSMUST00000056925 Amer1Q7TS75 1132 aa16.56■□□□□ 0.24
Col6a3-201ENSMUST00000056925 CenpbP27790 599 aa16.35■□□□□ 0.21
Col6a3-201ENSMUST00000056925 Ehmt2Q9Z148 1263 aaKnown RBP16.28■□□□□ 0.2
Col6a3-201ENSMUST00000056925 Myt1Q8CFC2 1127 aa16.21■□□□□ 0.19
Col6a3-201ENSMUST00000056925 Wdr66E9Q743 1299 aa16.18■□□□□ 0.18
Col6a3-201ENSMUST00000056925 Zeb1Q64318 1117 aa16.02■□□□□ 0.15
Col6a3-201ENSMUST00000056925 4930567H17RikQ3V0K5 233 aa15.99■□□□□ 0.15
Col6a3-201ENSMUST00000056925 Ttbk1Q6PCN3 1308 aa15.89■□□□□ 0.13
Col6a3-201ENSMUST00000056925 DiexfQ8BTT6 772 aaKnown RBP15.78■□□□□ 0.12
Col6a3-201ENSMUST00000056925 Acin1Q9JIX8 1338 aaKnown RBP15.66■□□□□ 0.1
Col6a3-201ENSMUST00000056925 4933416C03RikQ3V063 378 aa15.56■□□□□ 0.08
Col6a3-201ENSMUST00000056925 Stra8P70278 393 aa15.54■□□□□ 0.08
Col6a3-201ENSMUST00000056925 Ube2uB1AUC4 352 aa15.5■□□□□ 0.07
Col6a3-201ENSMUST00000056925 Rtl1Q7M732 1744 aa15.36■□□□□ 0.05
Col6a3-201ENSMUST00000056925 Rtl5Q5DTT4 599 aa15.31■□□□□ 0.04
Col6a3-201ENSMUST00000056925 NefmP08553 848 aa15.31■□□□□ 0.04
Col6a3-201ENSMUST00000056925 Pcgf6Q99NA9 353 aa15.29■□□□□ 0.04
Col6a3-201ENSMUST00000056925 Cdk11bP24788 784 aaKnown RBP15.27■□□□□ 0.03
Col6a3-201ENSMUST00000056925 Tnnt3Q9QZ47 272 aa15.24■□□□□ 0.03
Col6a3-201ENSMUST00000056925 Ccdc180J3QNE4 1664 aa15.22■□□□□ 0.03
Col6a3-201ENSMUST00000056925 Ccdc136Q3TVA9 1136 aa15.2■□□□□ 0.02
Col6a3-201ENSMUST00000056925 Slc24a1Q91WD8 1130 aa15.17■□□□□ 0.02
Col6a3-201ENSMUST00000056925 Gab3Q8BSM5 595 aa15.14■□□□□ 0.01
Col6a3-201ENSMUST00000056925 Esf1Q3V1V3 845 aaKnown RBP15.1■□□□□ 0.01
Col6a3-201ENSMUST00000056925 Ythdc1E9Q5K9 736 aaKnown RBP15.03■□□□□ -0
Col6a3-201ENSMUST00000056925 Npm2Q80W85 207 aa15.02□□□□□ -0.01
Col6a3-201ENSMUST00000056925 Nop58Q6DFW4 536 aaKnown RBP15□□□□□ -0.01
Col6a3-201ENSMUST00000056925 NeflP08551 543 aa14.99□□□□□ -0.01
Col6a3-201ENSMUST00000056925 Myt1lP97500 1187 aa14.94□□□□□ -0.02
Col6a3-201ENSMUST00000056925 HrcG5E8J6 738 aa14.93□□□□□ -0.02
Col6a3-201ENSMUST00000056925 Trim41Q5NCC3 630 aa14.92□□□□□ -0.02
Col6a3-201ENSMUST00000056925 UbtfP25976 765 aaKnown RBP14.88□□□□□ -0.03
Col6a3-201ENSMUST00000056925 Supt5hO55201 1082 aaKnown RBP14.85□□□□□ -0.03
Col6a3-201ENSMUST00000056925 DaxxO35613 739 aa14.82□□□□□ -0.04
Col6a3-201ENSMUST00000056925 Anp32aO35381 247 aa14.8□□□□□ -0.04
Col6a3-201ENSMUST00000056925 NrdcQ8BHG1 1161 aa14.8□□□□□ -0.04
Col6a3-201ENSMUST00000056925 Eif5bQ05D44 1216 aaKnown RBP14.77□□□□□ -0.05
Col6a3-201ENSMUST00000056925 Anp32bQ9EST5 272 aaKnown RBP14.69□□□□□ -0.06
Col6a3-201ENSMUST00000056925 CatipB9EKE5 520 aa14.6□□□□□ -0.07
Col6a3-201ENSMUST00000056925 NclP09405 707 aaKnown RBP14.57□□□□□ -0.08
Col6a3-201ENSMUST00000056925 Csrnp3P59055 597 aa14.54□□□□□ -0.08
Col6a3-201ENSMUST00000056925 Ccdc9Q8VC31 543 aaKnown RBP14.54□□□□□ -0.08
Col6a3-201ENSMUST00000056925 Aplp2Q06335 707 aa14.53□□□□□ -0.08
Col6a3-201ENSMUST00000056925 Neurod1Q60867 357 aa14.52□□□□□ -0.08
Col6a3-201ENSMUST00000056925 NischQ80TM9 1593 aa14.48□□□□□ -0.09
Col6a3-201ENSMUST00000056925 Gm38655A0A286YDK6 273 aa14.48□□□□□ -0.09
Col6a3-201ENSMUST00000056925 Ppargc1bQ8VHJ7 1014 aa14.46□□□□□ -0.09
Col6a3-201ENSMUST00000056925 Bcl11aQ9QYE3 773 aa14.46□□□□□ -0.09
Col6a3-201ENSMUST00000056925 TonslQ6NZL6 1363 aa14.44□□□□□ -0.1
Col6a3-201ENSMUST00000056925 Anks4bQ8K3X6 423 aa14.43□□□□□ -0.1
Col6a3-201ENSMUST00000056925 ClspnQ80YR7 1315 aa14.39□□□□□ -0.11
Col6a3-201ENSMUST00000056925 Lmod3E9QA62 571 aa14.36□□□□□ -0.11
Col6a3-201ENSMUST00000056925 Fam50aQ9WV03 339 aaKnown RBP14.34□□□□□ -0.11
Col6a3-201ENSMUST00000056925 Hsp90aa1P07901 733 aaKnown RBP14.32□□□□□ -0.12
Col6a3-201ENSMUST00000056925 Upf2A2AT37 1269 aaKnown RBP14.28□□□□□ -0.12
Col6a3-201ENSMUST00000056925 Os9Q8K2C7 672 aa14.2□□□□□ -0.14
Col6a3-201ENSMUST00000056925 ArxO35085 564 aa14.18□□□□□ -0.14
Col6a3-201ENSMUST00000056925 Mier1Q5UAK0 511 aa14.15□□□□□ -0.14
Col6a3-201ENSMUST00000056925 1700123L14RikQ3V2K7 440 aa14.11□□□□□ -0.15
Col6a3-201ENSMUST00000056925 Tnnt2P50752 301 aa14.1□□□□□ -0.15
Col6a3-201ENSMUST00000056925 Calr4Q3TQS0 420 aa14.09□□□□□ -0.15
Col6a3-201ENSMUST00000056925 Ppp4r2Q0VGB7 417 aa14.07□□□□□ -0.16
Col6a3-201ENSMUST00000056925 Trim44Q9QXA7 346 aa14.07□□□□□ -0.16
Col6a3-201ENSMUST00000056925 Ap3b1Q9Z1T1 1105 aa14.06□□□□□ -0.16
Col6a3-201ENSMUST00000056925 Irx3P81067 507 aa14.06□□□□□ -0.16
Col6a3-201ENSMUST00000056925 DekQ7TNV0 380 aaKnown RBP14.05□□□□□ -0.16
Col6a3-201ENSMUST00000056925 Fam71e1A1L3C1 212 aa14.04□□□□□ -0.16
Col6a3-201ENSMUST00000056925 Ccdc27Q3V036 639 aa14.02□□□□□ -0.16
Col6a3-201ENSMUST00000056925 Wdr43Q6ZQL4 677 aaKnown RBP14□□□□□ -0.17
Col6a3-201ENSMUST00000056925 Mapk8ip2Q9ERE9 830 aa13.99□□□□□ -0.17
Col6a3-201ENSMUST00000056925 Sall2Q9QX96 1004 aa13.92□□□□□ -0.18
Col6a3-201ENSMUST00000056925 Il27Q8K3I6 234 aa13.92□□□□□ -0.18
Col6a3-201ENSMUST00000056925 Pknox2Q8BG99 474 aa13.9□□□□□ -0.18
Col6a3-201ENSMUST00000056925 Nlrp6Q91WS2 869 aa13.9□□□□□ -0.18
Col6a3-201ENSMUST00000056925 Vsig10D3YX43 558 aa13.9□□□□□ -0.18
Col6a3-201ENSMUST00000056925 Polr3glQ8R0C0 218 aa13.87□□□□□ -0.19
Col6a3-201ENSMUST00000056925 CanxP35564 591 aaKnown RBP13.87□□□□□ -0.19
Col6a3-201ENSMUST00000056925 Znf326O88291 580 aa13.83□□□□□ -0.2
Col6a3-201ENSMUST00000056925 Dcaf1Q80TR8 1506 aa13.83□□□□□ -0.2
Col6a3-201ENSMUST00000056925 Adam1bQ8R534 806 aa13.82□□□□□ -0.2
Col6a3-201ENSMUST00000056925 Znf316Q6PGE4 1016 aa13.82□□□□□ -0.2
Col6a3-201ENSMUST00000056925 PtmaP26350 111 aa13.82□□□□□ -0.2
Col6a3-201ENSMUST00000056925 Htatsf1Q8BGC0 757 aa13.79□□□□□ -0.2
Col6a3-201ENSMUST00000056925 Hsp90ab1P11499 724 aaKnown RBP13.78□□□□□ -0.2
Col6a3-201ENSMUST00000056925 Zbtb7cQ8VCZ7 619 aa13.77□□□□□ -0.21
Col6a3-201ENSMUST00000056925 Taok2Q6ZQ29 1240 aa13.76□□□□□ -0.21
Col6a3-201ENSMUST00000056925 AU015836B2RUM3 263 aa13.75□□□□□ -0.21
Col6a3-201ENSMUST00000056925 Zcchc6Q5BLK4 1491 aaKnown RBP13.75□□□□□ -0.21
Col6a3-201ENSMUST00000056925 Podxl2Q8CAE9 603 aa13.73□□□□□ -0.21
Col6a3-201ENSMUST00000056925 Plekhg3Q4VAC9 1341 aa13.69□□□□□ -0.22
Col6a3-201ENSMUST00000056925 Zbtb4Q5F293 982 aa13.66□□□□□ -0.22
Col6a3-201ENSMUST00000056925 Gtf3c3Q3TMP1 882 aa13.66□□□□□ -0.22
Col6a3-201ENSMUST00000056925 Chic1Q8CBW7 227 aa13.66□□□□□ -0.22
Col6a3-201ENSMUST00000056925 Plcb2A3KGF7 1181 aa13.66□□□□□ -0.22
Col6a3-201ENSMUST00000056925 Trim30dE9PWL0 497 aa13.65□□□□□ -0.23
Retrieved 100 of 22,080 RNA–protein pairs in 9.6 ms