RNA–Protein interactions for RNA: ENSMUST00000055353.8

Msx3-201, Transcript of Homeobox protein MSX-3, mousemouse

TSL 1 (best) BASIC

Gene Msx3, Length 2,356 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Msx3-201ENSMUST00000055353 NischQ80TM9 1593 aa27.43■■□□□ 1.98
Msx3-201ENSMUST00000055353 Gm35339A0A140LHH9 1649 aa26.66■■□□□ 1.86
Msx3-201ENSMUST00000055353 Abcc9P70170 1546 aa26.59■■□□□ 1.85
Msx3-201ENSMUST00000055353 Abcc8B2RUS7 1588 aa25.95■■□□□ 1.75
Msx3-201ENSMUST00000055353 Rhox8Q6VSS7 320 aa25.91■■□□□ 1.74
Msx3-201ENSMUST00000055353 Rtl1Q7M732 1744 aa25.32■■□□□ 1.64
Msx3-201ENSMUST00000055353 Ccdc180J3QNE4 1664 aa25.03■■□□□ 1.6
Msx3-201ENSMUST00000055353 Zcchc6Q5BLK4 1491 aaKnown RBP24.61■■□□□ 1.53
Msx3-201ENSMUST00000055353 ScribQ80U72 1612 aa24.14■■□□□ 1.45
Msx3-201ENSMUST00000055353 Rpgrip1Q9EPQ2 1331 aa24.08■■□□□ 1.45
Msx3-201ENSMUST00000055353 Ccdc136Q3TVA9 1136 aa24.07■■□□□ 1.44
Msx3-201ENSMUST00000055353 Rb1cc1Q9ESK9 1588 aa24.06■■□□□ 1.44
Msx3-201ENSMUST00000055353 Dcaf1Q80TR8 1506 aa24.06■■□□□ 1.44
Msx3-201ENSMUST00000055353 Ehmt2Q9Z148 1263 aaKnown RBP24.03■■□□□ 1.44
Msx3-201ENSMUST00000055353 HrcG5E8J6 738 aa23.87■■□□□ 1.41
Msx3-201ENSMUST00000055353 Acin1Q9JIX8 1338 aaKnown RBP23.86■■□□□ 1.41
Msx3-201ENSMUST00000055353 Kdm5dQ62240 1548 aa23.73■■□□□ 1.39
Msx3-201ENSMUST00000055353 Baz1aO88379 1555 aa23.72■■□□□ 1.39
Msx3-201ENSMUST00000055353 Trim41Q5NCC3 630 aa23.52■■□□□ 1.36
Msx3-201ENSMUST00000055353 NacadQ5SWP3 1504 aa23.39■■□□□ 1.33
Msx3-201ENSMUST00000055353 Smarca2Q6DIC0 1577 aa23.23■■□□□ 1.31
Msx3-201ENSMUST00000055353 Pcgf6Q99NA9 353 aa23.13■■□□□ 1.29
Msx3-201ENSMUST00000055353 Cep164Q5DU05 1446 aa23.12■■□□□ 1.29
Msx3-201ENSMUST00000055353 Crybg2B7ZCC2 1516 aa23.07■■□□□ 1.28
Msx3-201ENSMUST00000055353 Chic1Q8CBW7 227 aa22.96■■□□□ 1.27
Msx3-201ENSMUST00000055353 Cngb1E1AZ71 1325 aa22.94■■□□□ 1.26
Msx3-201ENSMUST00000055353 Sycp2Q9CUU3 1500 aa22.91■■□□□ 1.26
Msx3-201ENSMUST00000055353 Gab3Q8BSM5 595 aa22.89■■□□□ 1.26
Msx3-201ENSMUST00000055353 Rsf1E9PWW9 1441 aaKnown RBP22.88■■□□□ 1.25
Msx3-201ENSMUST00000055353 Cecr2E9Q2Z1 1453 aa22.78■■□□□ 1.24
Msx3-201ENSMUST00000055353 Supt5hO55201 1082 aaKnown RBP22.77■■□□□ 1.24
Msx3-201ENSMUST00000055353 Ccdc88bQ4QRL3 1481 aa22.72■■□□□ 1.23
Msx3-201ENSMUST00000055353 Brd4Q9ESU6 1400 aaKnown RBP22.66■■□□□ 1.22
Msx3-201ENSMUST00000055353 Synj1Q8CHC4 1574 aa22.58■■□□□ 1.21
Msx3-201ENSMUST00000055353 Golga3P55937 1487 aa22.58■■□□□ 1.2
Msx3-201ENSMUST00000055353 Zeb1Q64318 1117 aa22.46■■□□□ 1.19
Msx3-201ENSMUST00000055353 BicraF8VPZ9 1578 aa22.46■■□□□ 1.19
Msx3-201ENSMUST00000055353 Mier1Q5UAK0 511 aa22.45■■□□□ 1.18
Msx3-201ENSMUST00000055353 Esf1Q3V1V3 845 aaKnown RBP22.42■■□□□ 1.18
Msx3-201ENSMUST00000055353 CftrP26361 1476 aa22.35■■□□□ 1.17
Msx3-201ENSMUST00000055353 Top2bQ64511 1612 aa22.26■■□□□ 1.15
Msx3-201ENSMUST00000055353 NefmP08553 848 aa22.24■■□□□ 1.15
Msx3-201ENSMUST00000055353 Neurod1Q60867 357 aa22.24■■□□□ 1.15
Msx3-201ENSMUST00000055353 Cc2d2aQ8CFW7 1633 aa22.17■■□□□ 1.14
Msx3-201ENSMUST00000055353 Sall2Q9QX96 1004 aa22.14■■□□□ 1.13
Msx3-201ENSMUST00000055353 Cttnbp2B9EJA2 1648 aa22.13■■□□□ 1.13
Msx3-201ENSMUST00000055353 UbtfP25976 765 aaKnown RBP22.09■■□□□ 1.13
Msx3-201ENSMUST00000055353 Rapgef2Q8CHG7 1496 aa21.99■■□□□ 1.11
Msx3-201ENSMUST00000055353 Smarca4Q3TKT4 1613 aaKnown RBP21.97■■□□□ 1.11
Msx3-201ENSMUST00000055353 Myt1lP97500 1187 aa21.96■■□□□ 1.11
Msx3-201ENSMUST00000055353 Myt1Q8CFC2 1127 aa21.9■■□□□ 1.1
Msx3-201ENSMUST00000055353 Fmn1Q05860 1466 aa21.88■■□□□ 1.09
Msx3-201ENSMUST00000055353 Top2aQ01320 1528 aaKnown RBP21.88■■□□□ 1.09
Msx3-201ENSMUST00000055353 Aebp2Q9Z248 504 aaKnown RBP21.87■■□□□ 1.09
Msx3-201ENSMUST00000055353 Cep162Q6ZQ06 1403 aa21.85■■□□□ 1.09
Msx3-201ENSMUST00000055353 DiexfQ8BTT6 772 aaKnown RBP21.8■■□□□ 1.08
Msx3-201ENSMUST00000055353 Wdr66E9Q743 1299 aa21.8■■□□□ 1.08
Msx3-201ENSMUST00000055353 Ppargc1bQ8VHJ7 1014 aa21.76■■□□□ 1.07
Msx3-201ENSMUST00000055353 Npm2Q80W85 207 aa21.74■■□□□ 1.07
Msx3-201ENSMUST00000055353 Las1lA2BE28 776 aaKnown RBP21.72■■□□□ 1.07
Msx3-201ENSMUST00000055353 Plekhg3Q4VAC9 1341 aa21.69■■□□□ 1.06
Msx3-201ENSMUST00000055353 Iqgap2Q3UQ44 1575 aa21.69■■□□□ 1.06
Msx3-201ENSMUST00000055353 Clip1Q922J3 1391 aa21.6■■□□□ 1.05
Msx3-201ENSMUST00000055353 Eif4g1Q6NZJ6 1600 aaKnown RBP21.56■■□□□ 1.04
Msx3-201ENSMUST00000055353 Anks4bQ8K3X6 423 aa21.56■■□□□ 1.04
Msx3-201ENSMUST00000055353 ClspnQ80YR7 1315 aa21.53■■□□□ 1.04
Msx3-201ENSMUST00000055353 Csrnp3P59055 597 aa21.52■■□□□ 1.04
Msx3-201ENSMUST00000055353 TonslQ6NZL6 1363 aa21.51■■□□□ 1.03
Msx3-201ENSMUST00000055353 Ncapd3Q6ZQK0 1506 aa21.45■■□□□ 1.02
Msx3-201ENSMUST00000055353 PtprkP35822 1457 aa21.44■■□□□ 1.02
Msx3-201ENSMUST00000055353 Nop58Q6DFW4 536 aaKnown RBP21.44■■□□□ 1.02
Msx3-201ENSMUST00000055353 Atad2bE9Q166 1460 aaKnown RBP21.43■■□□□ 1.02
Msx3-201ENSMUST00000055353 Cdk11bP24788 784 aaKnown RBP21.41■■□□□ 1.02
Msx3-201ENSMUST00000055353 1700123L14RikQ3V2K7 440 aa21.41■■□□□ 1.02
Msx3-201ENSMUST00000055353 Ap3b1Q9Z1T1 1105 aa21.41■■□□□ 1.02
Msx3-201ENSMUST00000055353 Arhgap35Q91YM2 1499 aa21.41■■□□□ 1.02
Msx3-201ENSMUST00000055353 TnnQ80Z71 1560 aa21.41■■□□□ 1.02
Msx3-201ENSMUST00000055353 Il27Q8K3I6 234 aa21.38■■□□□ 1.01
Msx3-201ENSMUST00000055353 CenpbP27790 599 aa21.37■■□□□ 1.01
Msx3-201ENSMUST00000055353 Arap1Q4LDD4 1452 aa21.33■■□□□ 1.01
Msx3-201ENSMUST00000055353 Eid3Q3V124 375 aa21.31■■□□□ 1
Msx3-201ENSMUST00000055353 Frmpd1A2AKB4 1549 aa21.26■□□□□ 0.99
Msx3-201ENSMUST00000055353 NrkQ9R0G8 1455 aa21.25■□□□□ 0.99
Msx3-201ENSMUST00000055353 Eea1Q8BL66 1411 aa21.25■□□□□ 0.99
Msx3-201ENSMUST00000055353 Pds5bQ4VA53 1446 aaKnown RBP21.24■□□□□ 0.99
Msx3-201ENSMUST00000055353 Setd5Q5XJV7 1441 aa21.21■□□□□ 0.99
Msx3-201ENSMUST00000055353 Arhgef5E9Q7D5 1581 aa21.19■□□□□ 0.98
Msx3-201ENSMUST00000055353 Kif15Q6P9L6 1387 aa21.18■□□□□ 0.98
Msx3-201ENSMUST00000055353 Wdr62Q3U3T8 1523 aa21.18■□□□□ 0.98
Msx3-201ENSMUST00000055353 Kdm5bQ80Y84 1544 aa21.17■□□□□ 0.98
Msx3-201ENSMUST00000055353 Lamc3Q9R0B6 1581 aa21.16■□□□□ 0.98
Msx3-201ENSMUST00000055353 Shroom4Q1W617 1475 aa21.14■□□□□ 0.98
Msx3-201ENSMUST00000055353 Gm38655A0A286YDK6 273 aa21.12■□□□□ 0.97
Msx3-201ENSMUST00000055353 Camsap1A2AHC3 1581 aa21.09■□□□□ 0.97
Msx3-201ENSMUST00000055353 AqrQ8CFQ3 1481 aaKnown RBP21.08■□□□□ 0.97
Msx3-201ENSMUST00000055353 Ccdc18Q640L5 1455 aa21.08■□□□□ 0.96
Msx3-201ENSMUST00000055353 Bcl11aQ9QYE3 773 aa21.07■□□□□ 0.96
Msx3-201ENSMUST00000055353 Unc13aQ4KUS2 1712 aa21.05■□□□□ 0.96
Msx3-201ENSMUST00000055353 Amer1Q7TS75 1132 aa21.05■□□□□ 0.96
Msx3-201ENSMUST00000055353 Tiam1Q60610 1591 aa21.03■□□□□ 0.96
Retrieved 100 of 22,080 RNA–protein pairs in 14.2 ms