RNA–Protein interactions for RNA: ENSMUST00000040089.4

Rnf43-201, Transcript of E3 ubiquitin-protein ligase RNF43, mousemouse

TSL 1 (best) BASIC

Gene Rnf43, Length 3,670 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf43-201ENSMUST00000040089 Rhox8Q6VSS7 320 aa17.27■□□□□ 0.36
Rnf43-201ENSMUST00000040089 NischQ80TM9 1593 aa16.84■□□□□ 0.29
Rnf43-201ENSMUST00000040089 Abcc9P70170 1546 aa15.92■□□□□ 0.14
Rnf43-201ENSMUST00000040089 Ccdc136Q3TVA9 1136 aa15.83■□□□□ 0.12
Rnf43-201ENSMUST00000040089 Abcc8B2RUS7 1588 aa15.76■□□□□ 0.11
Rnf43-201ENSMUST00000040089 Gm35339A0A140LHH9 1649 aa15.6■□□□□ 0.09
Rnf43-201ENSMUST00000040089 Ehmt2Q9Z148 1263 aaKnown RBP15.48■□□□□ 0.07
Rnf43-201ENSMUST00000040089 Rpgrip1Q9EPQ2 1331 aa15.39■□□□□ 0.05
Rnf43-201ENSMUST00000040089 Esf1Q3V1V3 845 aaKnown RBP15.33■□□□□ 0.04
Rnf43-201ENSMUST00000040089 Cngb1E1AZ71 1325 aa15.28■□□□□ 0.04
Rnf43-201ENSMUST00000040089 Trim41Q5NCC3 630 aa15.13■□□□□ 0.01
Rnf43-201ENSMUST00000040089 Zcchc6Q5BLK4 1491 aaKnown RBP15.13■□□□□ 0.01
Rnf43-201ENSMUST00000040089 Gab3Q8BSM5 595 aa15.07■□□□□ 0
Rnf43-201ENSMUST00000040089 Acin1Q9JIX8 1338 aaKnown RBP14.78□□□□□ -0.04
Rnf43-201ENSMUST00000040089 Rtl1Q7M732 1744 aa14.77□□□□□ -0.04
Rnf43-201ENSMUST00000040089 Ccdc180J3QNE4 1664 aa14.76□□□□□ -0.05
Rnf43-201ENSMUST00000040089 Il27Q8K3I6 234 aa14.76□□□□□ -0.05
Rnf43-201ENSMUST00000040089 Rb1cc1Q9ESK9 1588 aa14.74□□□□□ -0.05
Rnf43-201ENSMUST00000040089 Myt1lP97500 1187 aa14.72□□□□□ -0.05
Rnf43-201ENSMUST00000040089 Zeb1Q64318 1117 aa14.72□□□□□ -0.05
Rnf43-201ENSMUST00000040089 Npm2Q80W85 207 aa14.7□□□□□ -0.06
Rnf43-201ENSMUST00000040089 NacadQ5SWP3 1504 aa14.68□□□□□ -0.06
Rnf43-201ENSMUST00000040089 Kdm5dQ62240 1548 aa14.66□□□□□ -0.06
Rnf43-201ENSMUST00000040089 ScribQ80U72 1612 aa14.59□□□□□ -0.07
Rnf43-201ENSMUST00000040089 Pcgf6Q99NA9 353 aa14.54□□□□□ -0.08
Rnf43-201ENSMUST00000040089 HrcG5E8J6 738 aa14.4□□□□□ -0.1
Rnf43-201ENSMUST00000040089 Baz1aO88379 1555 aa14.4□□□□□ -0.1
Rnf43-201ENSMUST00000040089 Dcaf1Q80TR8 1506 aa14.36□□□□□ -0.11
Rnf43-201ENSMUST00000040089 Chic1Q8CBW7 227 aa14.32□□□□□ -0.12
Rnf43-201ENSMUST00000040089 Brd4Q9ESU6 1400 aaKnown RBP14.27□□□□□ -0.13
Rnf43-201ENSMUST00000040089 UbtfP25976 765 aaKnown RBP14.24□□□□□ -0.13
Rnf43-201ENSMUST00000040089 Sycp2Q9CUU3 1500 aa14.23□□□□□ -0.13
Rnf43-201ENSMUST00000040089 Ap3b1Q9Z1T1 1105 aa14.23□□□□□ -0.13
Rnf43-201ENSMUST00000040089 Npm1Q61937 292 aaKnown RBP14.2□□□□□ -0.14
Rnf43-201ENSMUST00000040089 Ubl4bQ9CQ84 188 aa14.19□□□□□ -0.14
Rnf43-201ENSMUST00000040089 Las1lA2BE28 776 aaKnown RBP14.18□□□□□ -0.14
Rnf43-201ENSMUST00000040089 Wdr66E9Q743 1299 aa14.17□□□□□ -0.14
Rnf43-201ENSMUST00000040089 Ube2uB1AUC4 352 aa14.16□□□□□ -0.14
Rnf43-201ENSMUST00000040089 Supt5hO55201 1082 aaKnown RBP14.14□□□□□ -0.15
Rnf43-201ENSMUST00000040089 Cecr2E9Q2Z1 1453 aa14.08□□□□□ -0.16
Rnf43-201ENSMUST00000040089 Ppargc1bQ8VHJ7 1014 aa14.04□□□□□ -0.16
Rnf43-201ENSMUST00000040089 Neurod1Q60867 357 aa13.98□□□□□ -0.17
Rnf43-201ENSMUST00000040089 Plekhg3Q4VAC9 1341 aa13.92□□□□□ -0.18
Rnf43-201ENSMUST00000040089 Lmod2Q3UHZ5 550 aa13.92□□□□□ -0.18
Rnf43-201ENSMUST00000040089 Kif15Q6P9L6 1387 aa13.91□□□□□ -0.18
Rnf43-201ENSMUST00000040089 Golga3P55937 1487 aa13.88□□□□□ -0.19
Rnf43-201ENSMUST00000040089 Pds5bQ4VA53 1446 aaKnown RBP13.86□□□□□ -0.19
Rnf43-201ENSMUST00000040089 Cep164Q5DU05 1446 aa13.85□□□□□ -0.19
Rnf43-201ENSMUST00000040089 Rsf1E9PWW9 1441 aaKnown RBP13.85□□□□□ -0.19
Rnf43-201ENSMUST00000040089 Fam50aQ9WV03 339 aaKnown RBP13.85□□□□□ -0.19
Rnf43-201ENSMUST00000040089 Crybg2B7ZCC2 1516 aa13.84□□□□□ -0.19
Rnf43-201ENSMUST00000040089 Smarca2Q6DIC0 1577 aa13.84□□□□□ -0.19
Rnf43-201ENSMUST00000040089 Ercc6F8VPZ5 1481 aa13.84□□□□□ -0.19
Rnf43-201ENSMUST00000040089 Mier1Q5UAK0 511 aa13.82□□□□□ -0.2
Rnf43-201ENSMUST00000040089 Ifnlr1Q8CGK5 535 aa13.82□□□□□ -0.2
Rnf43-201ENSMUST00000040089 CftrP26361 1476 aa13.79□□□□□ -0.2
Rnf43-201ENSMUST00000040089 NefmP08553 848 aa13.79□□□□□ -0.2
Rnf43-201ENSMUST00000040089 Fkbp15Q6P9Q6 1216 aaKnown RBP13.79□□□□□ -0.2
Rnf43-201ENSMUST00000040089 Ccdc88bQ4QRL3 1481 aa13.79□□□□□ -0.2
Rnf43-201ENSMUST00000040089 Synj1Q8CHC4 1574 aa13.74□□□□□ -0.21
Rnf43-201ENSMUST00000040089 BicraF8VPZ9 1578 aa13.71□□□□□ -0.21
Rnf43-201ENSMUST00000040089 Atad2bE9Q166 1460 aaKnown RBP13.7□□□□□ -0.22
Rnf43-201ENSMUST00000040089 CenpbP27790 599 aa13.67□□□□□ -0.22
Rnf43-201ENSMUST00000040089 Zbtb7cQ8VCZ7 619 aa13.67□□□□□ -0.22
Rnf43-201ENSMUST00000040089 Clip1Q922J3 1391 aa13.66□□□□□ -0.22
Rnf43-201ENSMUST00000040089 Myt1Q8CFC2 1127 aa13.65□□□□□ -0.22
Rnf43-201ENSMUST00000040089 Smarca4Q3TKT4 1613 aaKnown RBP13.65□□□□□ -0.22
Rnf43-201ENSMUST00000040089 Sall2Q9QX96 1004 aa13.62□□□□□ -0.23
Rnf43-201ENSMUST00000040089 Pelp1Q9DBD5 1123 aaKnown RBP13.61□□□□□ -0.23
Rnf43-201ENSMUST00000040089 1700123L14RikQ3V2K7 440 aa13.61□□□□□ -0.23
Rnf43-201ENSMUST00000040089 Anks4bQ8K3X6 423 aa13.61□□□□□ -0.23
Rnf43-201ENSMUST00000040089 Dnajc5bQ9CQ94 199 aa13.59□□□□□ -0.23
Rnf43-201ENSMUST00000040089 Csrnp3P59055 597 aa13.58□□□□□ -0.24
Rnf43-201ENSMUST00000040089 Iqgap2Q3UQ44 1575 aa13.56□□□□□ -0.24
Rnf43-201ENSMUST00000040089 Ccdc18Q640L5 1455 aa13.56□□□□□ -0.24
Rnf43-201ENSMUST00000040089 Eid3Q3V124 375 aa13.55□□□□□ -0.24
Rnf43-201ENSMUST00000040089 Cux2P70298 1426 aa13.55□□□□□ -0.24
Rnf43-201ENSMUST00000040089 Phldb1Q6PDH0 1371 aaKnown RBP13.53□□□□□ -0.24
Rnf43-201ENSMUST00000040089 Cdk11bP24788 784 aaKnown RBP13.53□□□□□ -0.24
Rnf43-201ENSMUST00000040089 Nop58Q6DFW4 536 aaKnown RBP13.5□□□□□ -0.25
Rnf43-201ENSMUST00000040089 Setd5Q5XJV7 1441 aa13.49□□□□□ -0.25
Rnf43-201ENSMUST00000040089 Gm38655A0A286YDK6 273 aa13.47□□□□□ -0.25
Rnf43-201ENSMUST00000040089 Fmn1Q05860 1466 aa13.47□□□□□ -0.25
Rnf43-201ENSMUST00000040089 Slc24a1Q91WD8 1130 aa13.46□□□□□ -0.25
Rnf43-201ENSMUST00000040089 Mapk8ip2Q9ERE9 830 aa13.46□□□□□ -0.26
Rnf43-201ENSMUST00000040089 Cttnbp2B9EJA2 1648 aa13.45□□□□□ -0.26
Rnf43-201ENSMUST00000040089 Arhgap27A2AB59 869 aa13.44□□□□□ -0.26
Rnf43-201ENSMUST00000040089 Plppr3Q7TPB0 716 aa13.44□□□□□ -0.26
Rnf43-201ENSMUST00000040089 BlmO88700 1416 aa13.43□□□□□ -0.26
Rnf43-201ENSMUST00000040089 Chic2Q9D9G3 165 aa13.43□□□□□ -0.26
Rnf43-201ENSMUST00000040089 Hnrnpul2Q00PI9 745 aaKnown RBP13.42□□□□□ -0.26
Rnf43-201ENSMUST00000040089 Aplp2Q06335 707 aa13.42□□□□□ -0.26
Rnf43-201ENSMUST00000040089 Aebp2Q9Z248 504 aaKnown RBP13.39□□□□□ -0.27
Rnf43-201ENSMUST00000040089 TonslQ6NZL6 1363 aa13.39□□□□□ -0.27
Rnf43-201ENSMUST00000040089 NclP09405 707 aaKnown RBP13.37□□□□□ -0.27
Rnf43-201ENSMUST00000040089 Frmpd1A2AKB4 1549 aa13.37□□□□□ -0.27
Rnf43-201ENSMUST00000040089 Cep162Q6ZQ06 1403 aa13.34□□□□□ -0.27
Rnf43-201ENSMUST00000040089 Rapgef2Q8CHG7 1496 aa13.33□□□□□ -0.28
Rnf43-201ENSMUST00000040089 LrpprcQ6PB66 1392 aaKnown RBP13.3□□□□□ -0.28
Rnf43-201ENSMUST00000040089 ClspnQ80YR7 1315 aa13.29□□□□□ -0.28
Retrieved 100 of 22,080 RNA–protein pairs in 132.9 ms