RNA–Protein interactions for RNA: ENSMUST00000038188.13

Limch1-201, Transcript of LIM and calponin homology domains-containing protein 1, mousemouse

TSL 1 (best) BASIC

Gene Limch1, Length 5,903 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1-201ENSMUST00000038188 Rhox8Q6VSS7 320 aa19.86■□□□□ 0.77
Limch1-201ENSMUST00000038188 Esf1Q3V1V3 845 aaKnown RBP18.06■□□□□ 0.48
Limch1-201ENSMUST00000038188 NischQ80TM9 1593 aa17.95■□□□□ 0.46
Limch1-201ENSMUST00000038188 Abcc9P70170 1546 aa17.84■□□□□ 0.45
Limch1-201ENSMUST00000038188 Ccdc136Q3TVA9 1136 aa17.77■□□□□ 0.44
Limch1-201ENSMUST00000038188 Cngb1E1AZ71 1325 aa17.74■□□□□ 0.43
Limch1-201ENSMUST00000038188 Zeb1Q64318 1117 aa17.66■□□□□ 0.42
Limch1-201ENSMUST00000038188 Gm35339A0A140LHH9 1649 aa17.58■□□□□ 0.41
Limch1-201ENSMUST00000038188 Npm2Q80W85 207 aa17.33■□□□□ 0.36
Limch1-201ENSMUST00000038188 Trim41Q5NCC3 630 aa17.22■□□□□ 0.35
Limch1-201ENSMUST00000038188 Il27Q8K3I6 234 aa17.21■□□□□ 0.35
Limch1-201ENSMUST00000038188 Gab3Q8BSM5 595 aa17.12■□□□□ 0.33
Limch1-201ENSMUST00000038188 Ube2uB1AUC4 352 aa17.1■□□□□ 0.33
Limch1-201ENSMUST00000038188 Myt1lP97500 1187 aa17.05■□□□□ 0.32
Limch1-201ENSMUST00000038188 Zcchc6Q5BLK4 1491 aaKnown RBP16.88■□□□□ 0.29
Limch1-201ENSMUST00000038188 Ehmt2Q9Z148 1263 aaKnown RBP16.67■□□□□ 0.26
Limch1-201ENSMUST00000038188 Ttbk1Q6PCN3 1308 aa16.66■□□□□ 0.26
Limch1-201ENSMUST00000038188 Ifnlr1Q8CGK5 535 aa16.65■□□□□ 0.26
Limch1-201ENSMUST00000038188 Npm1Q61937 292 aaKnown RBP16.63■□□□□ 0.25
Limch1-201ENSMUST00000038188 Plppr3Q7TPB0 716 aa16.58■□□□□ 0.25
Limch1-201ENSMUST00000038188 Pelp1Q9DBD5 1123 aaKnown RBP16.55■□□□□ 0.24
Limch1-201ENSMUST00000038188 Abcc8B2RUS7 1588 aa16.47■□□□□ 0.23
Limch1-201ENSMUST00000038188 Ubl4bQ9CQ84 188 aa16.44■□□□□ 0.22
Limch1-201ENSMUST00000038188 Ap3b1Q9Z1T1 1105 aa16.35■□□□□ 0.21
Limch1-201ENSMUST00000038188 Gm13697A2AK42 830 aa16.26■□□□□ 0.19
Limch1-201ENSMUST00000038188 Fkbp15Q6P9Q6 1216 aaKnown RBP16.21■□□□□ 0.18
Limch1-201ENSMUST00000038188 Zbtb7cQ8VCZ7 619 aa16.09■□□□□ 0.17
Limch1-201ENSMUST00000038188 UbtfP25976 765 aaKnown RBP16.07■□□□□ 0.16
Limch1-201ENSMUST00000038188 Os9Q8K2C7 672 aa16.03■□□□□ 0.16
Limch1-201ENSMUST00000038188 NacadQ5SWP3 1504 aa15.99■□□□□ 0.15
Limch1-201ENSMUST00000038188 Las1lA2BE28 776 aaKnown RBP15.98■□□□□ 0.15
Limch1-201ENSMUST00000038188 Wdr66E9Q743 1299 aa15.98■□□□□ 0.15
Limch1-201ENSMUST00000038188 Ercc6F8VPZ5 1481 aa15.98■□□□□ 0.15
Limch1-201ENSMUST00000038188 Fam50aQ9WV03 339 aaKnown RBP15.93■□□□□ 0.14
Limch1-201ENSMUST00000038188 Safb2Q80YR5 991 aaKnown RBP15.92■□□□□ 0.14
Limch1-201ENSMUST00000038188 Hnrnpul2Q00PI9 745 aaKnown RBP15.92■□□□□ 0.14
Limch1-201ENSMUST00000038188 HrcG5E8J6 738 aa15.87■□□□□ 0.13
Limch1-201ENSMUST00000038188 Lmod2Q3UHZ5 550 aa15.86■□□□□ 0.13
Limch1-201ENSMUST00000038188 Gm13695A2AK44 830 aa15.84■□□□□ 0.13
Limch1-201ENSMUST00000038188 Rpgrip1Q9EPQ2 1331 aa15.83■□□□□ 0.13
Limch1-201ENSMUST00000038188 Rb1cc1Q9ESK9 1588 aa15.81■□□□□ 0.12
Limch1-201ENSMUST00000038188 Slc24a1Q91WD8 1130 aa15.81■□□□□ 0.12
Limch1-201ENSMUST00000038188 Atp1b4Q99ME6 356 aa15.79■□□□□ 0.12
Limch1-201ENSMUST00000038188 Neurod1Q60867 357 aa15.78■□□□□ 0.12
Limch1-201ENSMUST00000038188 NclP09405 707 aaKnown RBP15.76■□□□□ 0.11
Limch1-201ENSMUST00000038188 Brd4Q9ESU6 1400 aaKnown RBP15.74■□□□□ 0.11
Limch1-201ENSMUST00000038188 Ccdc180J3QNE4 1664 aa15.74■□□□□ 0.11
Limch1-201ENSMUST00000038188 Erich6D3Z6S9 713 aa15.72■□□□□ 0.11
Limch1-201ENSMUST00000038188 Chic1Q8CBW7 227 aa15.72■□□□□ 0.11
Limch1-201ENSMUST00000038188 Kif15Q6P9L6 1387 aa15.65■□□□□ 0.1
Limch1-201ENSMUST00000038188 MyclP10166 368 aa15.64■□□□□ 0.09
Limch1-201ENSMUST00000038188 Ppp1r18Q8BQ30 594 aa15.63■□□□□ 0.09
Limch1-201ENSMUST00000038188 Pds5bQ4VA53 1446 aaKnown RBP15.59■□□□□ 0.09
Limch1-201ENSMUST00000038188 Kdm5dQ62240 1548 aa15.57■□□□□ 0.08
Limch1-201ENSMUST00000038188 Rsf1E9PWW9 1441 aaKnown RBP15.55■□□□□ 0.08
Limch1-201ENSMUST00000038188 Arhgap27A2AB59 869 aa15.5■□□□□ 0.07
Limch1-201ENSMUST00000038188 MlecQ6ZQI3 291 aaKnown RBP15.47■□□□□ 0.07
Limch1-201ENSMUST00000038188 Cep164Q5DU05 1446 aa15.46■□□□□ 0.07
Limch1-201ENSMUST00000038188 Plekhg3Q4VAC9 1341 aa15.44■□□□□ 0.06
Limch1-201ENSMUST00000038188 P3h3Q8CG70 732 aa15.39■□□□□ 0.05
Limch1-201ENSMUST00000038188 Zbtb4Q5F293 982 aa15.39■□□□□ 0.05
Limch1-201ENSMUST00000038188 Ccdc18Q640L5 1455 aa15.39■□□□□ 0.05
Limch1-201ENSMUST00000038188 Rtl1Q7M732 1744 aa15.3■□□□□ 0.04
Limch1-201ENSMUST00000038188 Prdm10Q3UTQ7 1184 aa15.3■□□□□ 0.04
Limch1-201ENSMUST00000038188 Baz1aO88379 1555 aa15.29■□□□□ 0.04
Limch1-201ENSMUST00000038188 AknaQ80VW7 1404 aa15.28■□□□□ 0.04
Limch1-201ENSMUST00000038188 Arid3cA6PWV5 409 aa15.26■□□□□ 0.03
Limch1-201ENSMUST00000038188 Pabpn1Q8CCS6 302 aaKnown RBP15.25■□□□□ 0.03
Limch1-201ENSMUST00000038188 Anp32bQ9EST5 272 aaKnown RBP15.22■□□□□ 0.03
Limch1-201ENSMUST00000038188 Sycp2Q9CUU3 1500 aa15.21■□□□□ 0.03
Limch1-201ENSMUST00000038188 Phldb1Q6PDH0 1371 aaKnown RBP15.17■□□□□ 0.02
Limch1-201ENSMUST00000038188 Cdk11bP24788 784 aaKnown RBP15.13■□□□□ 0.01
Limch1-201ENSMUST00000038188 Chic2Q9D9G3 165 aa15.13■□□□□ 0.01
Limch1-201ENSMUST00000038188 Hdac5Q9Z2V6 1113 aa15.12■□□□□ 0.01
Limch1-201ENSMUST00000038188 Clip1Q922J3 1391 aa15.12■□□□□ 0.01
Limch1-201ENSMUST00000038188 Ecm2Q5FW85 670 aa15.1■□□□□ 0.01
Limch1-201ENSMUST00000038188 Cux2P70298 1426 aa15.09■□□□□ 0.01
Limch1-201ENSMUST00000038188 Ggt6Q6PDE7 497 aa15.08■□□□□ 0
Limch1-201ENSMUST00000038188 Dcaf1Q80TR8 1506 aa15.08■□□□□ 0
Limch1-201ENSMUST00000038188 NefmP08553 848 aa15.05■□□□□ 0
Limch1-201ENSMUST00000038188 DiexfQ8BTT6 772 aaKnown RBP15.05■□□□□ -0
Limch1-201ENSMUST00000038188 Atad2bE9Q166 1460 aaKnown RBP15.01□□□□□ -0.01
Limch1-201ENSMUST00000038188 NrdcQ8BHG1 1161 aa14.99□□□□□ -0.01
Limch1-201ENSMUST00000038188 Clstn2Q9ER65 966 aa14.96□□□□□ -0.01
Limch1-201ENSMUST00000038188 BlmO88700 1416 aa14.96□□□□□ -0.02
Limch1-201ENSMUST00000038188 Rrp7aQ9D1C9 280 aaKnown RBP14.93□□□□□ -0.02
Limch1-201ENSMUST00000038188 Nlrp6Q91WS2 869 aa14.92□□□□□ -0.02
Limch1-201ENSMUST00000038188 Golga3P55937 1487 aa14.92□□□□□ -0.02
Limch1-201ENSMUST00000038188 Setd5Q5XJV7 1441 aa14.91□□□□□ -0.02
Limch1-201ENSMUST00000038188 ScribQ80U72 1612 aa14.91□□□□□ -0.02
Limch1-201ENSMUST00000038188 Arid4bA2CG63 1314 aaKnown RBP14.91□□□□□ -0.02
Limch1-201ENSMUST00000038188 NgefQ8CHT1 710 aa14.9□□□□□ -0.02
Limch1-201ENSMUST00000038188 Cecr2E9Q2Z1 1453 aa14.86□□□□□ -0.03
Limch1-201ENSMUST00000038188 Rpap1Q80TE0 1409 aa14.86□□□□□ -0.03
Limch1-201ENSMUST00000038188 Ppargc1bQ8VHJ7 1014 aa14.84□□□□□ -0.03
Limch1-201ENSMUST00000038188 Stk24Q99KH8 431 aa14.83□□□□□ -0.04
Limch1-201ENSMUST00000038188 Dnajc5bQ9CQ94 199 aa14.82□□□□□ -0.04
Limch1-201ENSMUST00000038188 Bcl11bQ99PV8 884 aa14.81□□□□□ -0.04
Limch1-201ENSMUST00000038188 Lemd3Q9WU40 921 aa14.81□□□□□ -0.04
Limch1-201ENSMUST00000038188 Stra8P70278 393 aa14.8□□□□□ -0.04
Retrieved 100 of 22,080 RNA–protein pairs in 19.7 ms