RNA–Protein interactions for RNA: ENSMUST00000023123.14

Col2a1-201, Transcript of Collagen alpha-1(II) chain, mousemouse

TSL 1 (best) BASIC

Gene Col2a1, Length 5,104 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1-201ENSMUST00000023123 Rhox8Q6VSS7 320 aa26.55■■□□□ 1.84
Col2a1-201ENSMUST00000023123 Rpgrip1Q9EPQ2 1331 aa25.2■■□□□ 1.62
Col2a1-201ENSMUST00000023123 Las1lA2BE28 776 aaKnown RBP24.22■■□□□ 1.47
Col2a1-201ENSMUST00000023123 Ehmt2Q9Z148 1263 aaKnown RBP24.17■■□□□ 1.46
Col2a1-201ENSMUST00000023123 Cngb1E1AZ71 1325 aa24.12■■□□□ 1.45
Col2a1-201ENSMUST00000023123 Wdr66E9Q743 1299 aa23.63■■□□□ 1.37
Col2a1-201ENSMUST00000023123 Pelp1Q9DBD5 1123 aaKnown RBP23.54■■□□□ 1.36
Col2a1-201ENSMUST00000023123 Ccdc136Q3TVA9 1136 aa23.5■■□□□ 1.35
Col2a1-201ENSMUST00000023123 Zeb1Q64318 1117 aa23.44■■□□□ 1.34
Col2a1-201ENSMUST00000023123 NischQ80TM9 1593 aa23.3■■□□□ 1.32
Col2a1-201ENSMUST00000023123 Esf1Q3V1V3 845 aaKnown RBP23.19■■□□□ 1.3
Col2a1-201ENSMUST00000023123 Acin1Q9JIX8 1338 aaKnown RBP23.16■■□□□ 1.3
Col2a1-201ENSMUST00000023123 Gab3Q8BSM5 595 aa23.13■■□□□ 1.29
Col2a1-201ENSMUST00000023123 Trim41Q5NCC3 630 aa23.11■■□□□ 1.29
Col2a1-201ENSMUST00000023123 CenpbP27790 599 aa23.03■■□□□ 1.28
Col2a1-201ENSMUST00000023123 Ube2uB1AUC4 352 aa23.01■■□□□ 1.27
Col2a1-201ENSMUST00000023123 NefmP08553 848 aa22.88■■□□□ 1.25
Col2a1-201ENSMUST00000023123 Npm2Q80W85 207 aa22.83■■□□□ 1.24
Col2a1-201ENSMUST00000023123 Myt1lP97500 1187 aa22.69■■□□□ 1.22
Col2a1-201ENSMUST00000023123 Stra8P70278 393 aa22.62■■□□□ 1.21
Col2a1-201ENSMUST00000023123 Amer1Q7TS75 1132 aa22.57■■□□□ 1.2
Col2a1-201ENSMUST00000023123 UbtfP25976 765 aaKnown RBP22.47■■□□□ 1.19
Col2a1-201ENSMUST00000023123 Pcgf6Q99NA9 353 aa22.46■■□□□ 1.19
Col2a1-201ENSMUST00000023123 Myt1Q8CFC2 1127 aa22.44■■□□□ 1.18
Col2a1-201ENSMUST00000023123 HrcG5E8J6 738 aa22.44■■□□□ 1.18
Col2a1-201ENSMUST00000023123 Cdk11bP24788 784 aaKnown RBP22.38■■□□□ 1.17
Col2a1-201ENSMUST00000023123 Ccdc180J3QNE4 1664 aa22.38■■□□□ 1.17
Col2a1-201ENSMUST00000023123 Slc24a1Q91WD8 1130 aa22.21■■□□□ 1.15
Col2a1-201ENSMUST00000023123 Tnnt3Q9QZ47 272 aa22.13■■□□□ 1.13
Col2a1-201ENSMUST00000023123 Nop58Q6DFW4 536 aaKnown RBP22.09■■□□□ 1.13
Col2a1-201ENSMUST00000023123 Rtl1Q7M732 1744 aa21.98■■□□□ 1.11
Col2a1-201ENSMUST00000023123 Supt5hO55201 1082 aaKnown RBP21.94■■□□□ 1.1
Col2a1-201ENSMUST00000023123 Ttbk1Q6PCN3 1308 aa21.89■■□□□ 1.1
Col2a1-201ENSMUST00000023123 Abcc9P70170 1546 aa21.87■■□□□ 1.09
Col2a1-201ENSMUST00000023123 NrdcQ8BHG1 1161 aa21.85■■□□□ 1.09
Col2a1-201ENSMUST00000023123 4933416C03RikQ3V063 378 aa21.83■■□□□ 1.08
Col2a1-201ENSMUST00000023123 NclP09405 707 aaKnown RBP21.76■■□□□ 1.07
Col2a1-201ENSMUST00000023123 4930567H17RikQ3V0K5 233 aa21.76■■□□□ 1.07
Col2a1-201ENSMUST00000023123 Anp32bQ9EST5 272 aaKnown RBP21.76■■□□□ 1.07
Col2a1-201ENSMUST00000023123 Rtl5Q5DTT4 599 aa21.71■■□□□ 1.07
Col2a1-201ENSMUST00000023123 NeflP08551 543 aa21.69■■□□□ 1.06
Col2a1-201ENSMUST00000023123 TonslQ6NZL6 1363 aa21.68■■□□□ 1.06
Col2a1-201ENSMUST00000023123 Fam50aQ9WV03 339 aaKnown RBP21.67■■□□□ 1.06
Col2a1-201ENSMUST00000023123 Ppargc1bQ8VHJ7 1014 aa21.66■■□□□ 1.06
Col2a1-201ENSMUST00000023123 Il27Q8K3I6 234 aa21.62■■□□□ 1.05
Col2a1-201ENSMUST00000023123 Eif5bQ05D44 1216 aaKnown RBP21.62■■□□□ 1.05
Col2a1-201ENSMUST00000023123 Mier1Q5UAK0 511 aa21.54■■□□□ 1.04
Col2a1-201ENSMUST00000023123 Neurod1Q60867 357 aa21.54■■□□□ 1.04
Col2a1-201ENSMUST00000023123 Abcc8B2RUS7 1588 aa21.51■■□□□ 1.03
Col2a1-201ENSMUST00000023123 Ap3b1Q9Z1T1 1105 aa21.49■■□□□ 1.03
Col2a1-201ENSMUST00000023123 Gm35339A0A140LHH9 1649 aa21.45■■□□□ 1.03
Col2a1-201ENSMUST00000023123 Zcchc6Q5BLK4 1491 aaKnown RBP21.43■■□□□ 1.02
Col2a1-201ENSMUST00000023123 ClspnQ80YR7 1315 aa21.42■■□□□ 1.02
Col2a1-201ENSMUST00000023123 DiexfQ8BTT6 772 aaKnown RBP21.35■■□□□ 1.01
Col2a1-201ENSMUST00000023123 Anp32aO35381 247 aa21.34■■□□□ 1.01
Col2a1-201ENSMUST00000023123 Os9Q8K2C7 672 aa21.21■□□□□ 0.99
Col2a1-201ENSMUST00000023123 Anks4bQ8K3X6 423 aa21.18■□□□□ 0.98
Col2a1-201ENSMUST00000023123 DaxxO35613 739 aa21.07■□□□□ 0.96
Col2a1-201ENSMUST00000023123 Sall2Q9QX96 1004 aa21.07■□□□□ 0.96
Col2a1-201ENSMUST00000023123 Aplp2Q06335 707 aa21.06■□□□□ 0.96
Col2a1-201ENSMUST00000023123 Plekhg3Q4VAC9 1341 aa21.02■□□□□ 0.96
Col2a1-201ENSMUST00000023123 Csrnp3P59055 597 aa21.01■□□□□ 0.95
Col2a1-201ENSMUST00000023123 Dcaf1Q80TR8 1506 aa21■□□□□ 0.95
Col2a1-201ENSMUST00000023123 Lmod2Q3UHZ5 550 aa20.92■□□□□ 0.94
Col2a1-201ENSMUST00000023123 Gm38655A0A286YDK6 273 aa20.92■□□□□ 0.94
Col2a1-201ENSMUST00000023123 Mapk8ip2Q9ERE9 830 aa20.83■□□□□ 0.92
Col2a1-201ENSMUST00000023123 Eid3Q3V124 375 aa20.81■□□□□ 0.92
Col2a1-201ENSMUST00000023123 Cep164Q5DU05 1446 aa20.77■□□□□ 0.92
Col2a1-201ENSMUST00000023123 Calr4Q3TQS0 420 aa20.74■□□□□ 0.91
Col2a1-201ENSMUST00000023123 Npm1Q61937 292 aaKnown RBP20.7■□□□□ 0.9
Col2a1-201ENSMUST00000023123 Ccer2J3QPU5 274 aa20.7■□□□□ 0.9
Col2a1-201ENSMUST00000023123 Zbtb7cQ8VCZ7 619 aa20.69■□□□□ 0.9
Col2a1-201ENSMUST00000023123 Clip1Q922J3 1391 aa20.69■□□□□ 0.9
Col2a1-201ENSMUST00000023123 Hnrnpul2Q00PI9 745 aaKnown RBP20.65■□□□□ 0.9
Col2a1-201ENSMUST00000023123 Ppp4r2Q0VGB7 417 aa20.65■□□□□ 0.9
Col2a1-201ENSMUST00000023123 Nlrp6Q91WS2 869 aa20.65■□□□□ 0.9
Col2a1-201ENSMUST00000023123 Upf2A2AT37 1269 aaKnown RBP20.58■□□□□ 0.88
Col2a1-201ENSMUST00000023123 Zbtb4Q5F293 982 aa20.58■□□□□ 0.88
Col2a1-201ENSMUST00000023123 Chic1Q8CBW7 227 aa20.57■□□□□ 0.88
Col2a1-201ENSMUST00000023123 Wdr43Q6ZQL4 677 aaKnown RBP20.57■□□□□ 0.88
Col2a1-201ENSMUST00000023123 Ccdc9Q8VC31 543 aaKnown RBP20.56■□□□□ 0.88
Col2a1-201ENSMUST00000023123 Brd4Q9ESU6 1400 aaKnown RBP20.55■□□□□ 0.88
Col2a1-201ENSMUST00000023123 Hdac5Q9Z2V6 1113 aa20.51■□□□□ 0.87
Col2a1-201ENSMUST00000023123 Polr3glQ8R0C0 218 aa20.51■□□□□ 0.87
Col2a1-201ENSMUST00000023123 ArxO35085 564 aa20.5■□□□□ 0.87
Col2a1-201ENSMUST00000023123 1700123L14RikQ3V2K7 440 aa20.48■□□□□ 0.87
Col2a1-201ENSMUST00000023123 Rb1cc1Q9ESK9 1588 aa20.46■□□□□ 0.87
Col2a1-201ENSMUST00000023123 Mrs2Q5NCE8 434 aa20.44■□□□□ 0.86
Col2a1-201ENSMUST00000023123 Erich6D3Z6S9 713 aa20.42■□□□□ 0.86
Col2a1-201ENSMUST00000023123 Hsp90aa1P07901 733 aaKnown RBP20.42■□□□□ 0.86
Col2a1-201ENSMUST00000023123 Prdm10Q3UTQ7 1184 aa20.36■□□□□ 0.85
Col2a1-201ENSMUST00000023123 NacadQ5SWP3 1504 aa20.31■□□□□ 0.84
Col2a1-201ENSMUST00000023123 Gm13697A2AK42 830 aa20.3■□□□□ 0.84
Col2a1-201ENSMUST00000023123 Fam71e1A1L3C1 212 aa20.29■□□□□ 0.84
Col2a1-201ENSMUST00000023123 Atp1b4Q99ME6 356 aa20.28■□□□□ 0.84
Col2a1-201ENSMUST00000023123 Rad21Q61550 635 aaKnown RBP20.28■□□□□ 0.84
Col2a1-201ENSMUST00000023123 Aebp2Q9Z248 504 aaKnown RBP20.25■□□□□ 0.83
Col2a1-201ENSMUST00000023123 BlmO88700 1416 aa20.19■□□□□ 0.82
Col2a1-201ENSMUST00000023123 Chic2Q9D9G3 165 aa20.19■□□□□ 0.82
Col2a1-201ENSMUST00000023123 CanxP35564 591 aaKnown RBP20.18■□□□□ 0.82
Retrieved 100 of 22,080 RNA–protein pairs in 57.5 ms