RNA–Protein interactions for RNA: ENSMUST00000014065.15

Clip3-201, Transcript of CAP-Gly domain-containing linker protein 3, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Clip3, Length 3,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Clip3-201ENSMUST00000014065 Gm35339A0A140LHH9 1649 aa18.46■□□□□ 0.54
Clip3-201ENSMUST00000014065 NischQ80TM9 1593 aa18.42■□□□□ 0.54
Clip3-201ENSMUST00000014065 Rhox8Q6VSS7 320 aa18.28■□□□□ 0.52
Clip3-201ENSMUST00000014065 Abcc9P70170 1546 aa17.93■□□□□ 0.46
Clip3-201ENSMUST00000014065 Abcc8B2RUS7 1588 aa17.53■□□□□ 0.4
Clip3-201ENSMUST00000014065 Ehmt2Q9Z148 1263 aaKnown RBP17.27■□□□□ 0.36
Clip3-201ENSMUST00000014065 Rpgrip1Q9EPQ2 1331 aa17.21■□□□□ 0.35
Clip3-201ENSMUST00000014065 Rtl1Q7M732 1744 aa17.19■□□□□ 0.34
Clip3-201ENSMUST00000014065 Ccdc180J3QNE4 1664 aa17.17■□□□□ 0.34
Clip3-201ENSMUST00000014065 Acin1Q9JIX8 1338 aaKnown RBP16.9■□□□□ 0.3
Clip3-201ENSMUST00000014065 Ccdc136Q3TVA9 1136 aa16.89■□□□□ 0.29
Clip3-201ENSMUST00000014065 Zcchc6Q5BLK4 1491 aaKnown RBP16.61■□□□□ 0.25
Clip3-201ENSMUST00000014065 Pcgf6Q99NA9 353 aa16.56■□□□□ 0.24
Clip3-201ENSMUST00000014065 HrcG5E8J6 738 aa16.55■□□□□ 0.24
Clip3-201ENSMUST00000014065 Trim41Q5NCC3 630 aa16.5■□□□□ 0.23
Clip3-201ENSMUST00000014065 ScribQ80U72 1612 aa16.49■□□□□ 0.23
Clip3-201ENSMUST00000014065 Dcaf1Q80TR8 1506 aa16.43■□□□□ 0.22
Clip3-201ENSMUST00000014065 Supt5hO55201 1082 aaKnown RBP16.26■□□□□ 0.19
Clip3-201ENSMUST00000014065 Gab3Q8BSM5 595 aa16.21■□□□□ 0.19
Clip3-201ENSMUST00000014065 Zeb1Q64318 1117 aa16.19■□□□□ 0.18
Clip3-201ENSMUST00000014065 Rb1cc1Q9ESK9 1588 aa16.17■□□□□ 0.18
Clip3-201ENSMUST00000014065 Cngb1E1AZ71 1325 aa16.12■□□□□ 0.17
Clip3-201ENSMUST00000014065 Kdm5dQ62240 1548 aa16.05■□□□□ 0.16
Clip3-201ENSMUST00000014065 Neurod1Q60867 357 aa15.94■□□□□ 0.14
Clip3-201ENSMUST00000014065 Baz1aO88379 1555 aa15.93■□□□□ 0.14
Clip3-201ENSMUST00000014065 NacadQ5SWP3 1504 aa15.9■□□□□ 0.14
Clip3-201ENSMUST00000014065 Cep164Q5DU05 1446 aa15.89■□□□□ 0.13
Clip3-201ENSMUST00000014065 Chic1Q8CBW7 227 aa15.88■□□□□ 0.13
Clip3-201ENSMUST00000014065 Mier1Q5UAK0 511 aa15.81■□□□□ 0.12
Clip3-201ENSMUST00000014065 NefmP08553 848 aa15.77■□□□□ 0.12
Clip3-201ENSMUST00000014065 Wdr66E9Q743 1299 aa15.75■□□□□ 0.11
Clip3-201ENSMUST00000014065 Esf1Q3V1V3 845 aaKnown RBP15.73■□□□□ 0.11
Clip3-201ENSMUST00000014065 Crybg2B7ZCC2 1516 aa15.73■□□□□ 0.11
Clip3-201ENSMUST00000014065 Sall2Q9QX96 1004 aa15.72■□□□□ 0.11
Clip3-201ENSMUST00000014065 UbtfP25976 765 aaKnown RBP15.7■□□□□ 0.1
Clip3-201ENSMUST00000014065 Ppargc1bQ8VHJ7 1014 aa15.66■□□□□ 0.1
Clip3-201ENSMUST00000014065 Rsf1E9PWW9 1441 aaKnown RBP15.66■□□□□ 0.1
Clip3-201ENSMUST00000014065 Las1lA2BE28 776 aaKnown RBP15.66■□□□□ 0.1
Clip3-201ENSMUST00000014065 Smarca2Q6DIC0 1577 aa15.62■□□□□ 0.09
Clip3-201ENSMUST00000014065 Sycp2Q9CUU3 1500 aa15.59■□□□□ 0.09
Clip3-201ENSMUST00000014065 Myt1lP97500 1187 aa15.55■□□□□ 0.08
Clip3-201ENSMUST00000014065 Ccdc88bQ4QRL3 1481 aa15.51■□□□□ 0.07
Clip3-201ENSMUST00000014065 Csrnp3P59055 597 aa15.49■□□□□ 0.07
Clip3-201ENSMUST00000014065 Aebp2Q9Z248 504 aaKnown RBP15.45■□□□□ 0.06
Clip3-201ENSMUST00000014065 Brd4Q9ESU6 1400 aaKnown RBP15.42■□□□□ 0.06
Clip3-201ENSMUST00000014065 1700123L14RikQ3V2K7 440 aa15.4■□□□□ 0.06
Clip3-201ENSMUST00000014065 Cdk11bP24788 784 aaKnown RBP15.39■□□□□ 0.05
Clip3-201ENSMUST00000014065 Nop58Q6DFW4 536 aaKnown RBP15.38■□□□□ 0.05
Clip3-201ENSMUST00000014065 Anks4bQ8K3X6 423 aa15.38■□□□□ 0.05
Clip3-201ENSMUST00000014065 Golga3P55937 1487 aa15.35■□□□□ 0.05
Clip3-201ENSMUST00000014065 Npm2Q80W85 207 aa15.34■□□□□ 0.05
Clip3-201ENSMUST00000014065 BicraF8VPZ9 1578 aa15.32■□□□□ 0.04
Clip3-201ENSMUST00000014065 Cecr2E9Q2Z1 1453 aa15.32■□□□□ 0.04
Clip3-201ENSMUST00000014065 Gm38655A0A286YDK6 273 aa15.31■□□□□ 0.04
Clip3-201ENSMUST00000014065 ClspnQ80YR7 1315 aa15.25■□□□□ 0.03
Clip3-201ENSMUST00000014065 Plekhg3Q4VAC9 1341 aa15.23■□□□□ 0.03
Clip3-201ENSMUST00000014065 TonslQ6NZL6 1363 aa15.23■□□□□ 0.03
Clip3-201ENSMUST00000014065 Synj1Q8CHC4 1574 aa15.17■□□□□ 0.02
Clip3-201ENSMUST00000014065 CenpbP27790 599 aa15.15■□□□□ 0.02
Clip3-201ENSMUST00000014065 Ap3b1Q9Z1T1 1105 aa15.1■□□□□ 0.01
Clip3-201ENSMUST00000014065 Eid3Q3V124 375 aa15.1■□□□□ 0.01
Clip3-201ENSMUST00000014065 CftrP26361 1476 aa15.04■□□□□ -0
Clip3-201ENSMUST00000014065 Aplp2Q06335 707 aa15.04■□□□□ -0
Clip3-201ENSMUST00000014065 Mapk8ip2Q9ERE9 830 aa15.03■□□□□ -0
Clip3-201ENSMUST00000014065 Clip1Q922J3 1391 aa15.02■□□□□ -0
Clip3-201ENSMUST00000014065 Il27Q8K3I6 234 aa14.98□□□□□ -0.01
Clip3-201ENSMUST00000014065 Cttnbp2B9EJA2 1648 aa14.95□□□□□ -0.02
Clip3-201ENSMUST00000014065 Cep162Q6ZQ06 1403 aa14.95□□□□□ -0.02
Clip3-201ENSMUST00000014065 Top2bQ64511 1612 aa14.94□□□□□ -0.02
Clip3-201ENSMUST00000014065 Rapgef2Q8CHG7 1496 aa14.93□□□□□ -0.02
Clip3-201ENSMUST00000014065 Cc2d2aQ8CFW7 1633 aa14.91□□□□□ -0.02
Clip3-201ENSMUST00000014065 Smarca4Q3TKT4 1613 aaKnown RBP14.89□□□□□ -0.03
Clip3-201ENSMUST00000014065 SafbD3YXK2 937 aaKnown RBP14.87□□□□□ -0.03
Clip3-201ENSMUST00000014065 Hnrnpul2Q00PI9 745 aaKnown RBP14.85□□□□□ -0.03
Clip3-201ENSMUST00000014065 Fam50aQ9WV03 339 aaKnown RBP14.85□□□□□ -0.03
Clip3-201ENSMUST00000014065 Fmn1Q05860 1466 aa14.81□□□□□ -0.04
Clip3-201ENSMUST00000014065 NclP09405 707 aaKnown RBP14.81□□□□□ -0.04
Clip3-201ENSMUST00000014065 Slc24a1Q91WD8 1130 aa14.79□□□□□ -0.04
Clip3-201ENSMUST00000014065 Myt1Q8CFC2 1127 aa14.77□□□□□ -0.04
Clip3-201ENSMUST00000014065 Fam71e1A1L3C1 212 aa14.76□□□□□ -0.05
Clip3-201ENSMUST00000014065 Ube2uB1AUC4 352 aa14.74□□□□□ -0.05
Clip3-201ENSMUST00000014065 Lmod2Q3UHZ5 550 aa14.74□□□□□ -0.05
Clip3-201ENSMUST00000014065 Tnnt3Q9QZ47 272 aa14.74□□□□□ -0.05
Clip3-201ENSMUST00000014065 Top2aQ01320 1528 aaKnown RBP14.73□□□□□ -0.05
Clip3-201ENSMUST00000014065 Iqgap2Q3UQ44 1575 aa14.69□□□□□ -0.06
Clip3-201ENSMUST00000014065 Setd5Q5XJV7 1441 aa14.68□□□□□ -0.06
Clip3-201ENSMUST00000014065 Ncapd3Q6ZQK0 1506 aa14.67□□□□□ -0.06
Clip3-201ENSMUST00000014065 Eea1Q8BL66 1411 aa14.64□□□□□ -0.07
Clip3-201ENSMUST00000014065 BlmO88700 1416 aa14.62□□□□□ -0.07
Clip3-201ENSMUST00000014065 Stra8P70278 393 aa14.61□□□□□ -0.07
Clip3-201ENSMUST00000014065 Atad2bE9Q166 1460 aaKnown RBP14.56□□□□□ -0.08
Clip3-201ENSMUST00000014065 Eif5bQ05D44 1216 aaKnown RBP14.55□□□□□ -0.08
Clip3-201ENSMUST00000014065 Arap1Q4LDD4 1452 aa14.53□□□□□ -0.08
Clip3-201ENSMUST00000014065 TnnQ80Z71 1560 aa14.53□□□□□ -0.08
Clip3-201ENSMUST00000014065 Hspa5P20029 655 aaKnown RBP14.53□□□□□ -0.08
Clip3-201ENSMUST00000014065 PtprkP35822 1457 aa14.52□□□□□ -0.08
Clip3-201ENSMUST00000014065 Anp32aO35381 247 aa14.52□□□□□ -0.09
Clip3-201ENSMUST00000014065 Arhgap35Q91YM2 1499 aa14.51□□□□□ -0.09
Clip3-201ENSMUST00000014065 Calr4Q3TQS0 420 aa14.48□□□□□ -0.09
Clip3-201ENSMUST00000014065 Baz1bQ9Z277 1479 aa14.48□□□□□ -0.09
Retrieved 100 of 22,080 RNA–protein pairs in 39.2 ms