RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 TMEM173Q86WV6 379 aaPredicted RBP3.28□□□□□ -1.88
SCFD1-216ENST00000555550 ARHGAP24Q8N264 748 aa3.28□□□□□ -1.88
SCFD1-216ENST00000555550 MARVELD2Q8N4S9 558 aa3.28□□□□□ -1.88
SCFD1-216ENST00000555550 POC5Q8NA72 575 aa3.28□□□□□ -1.88
SCFD1-216ENST00000555550 OR5AP2Q8NGF4 316 aa3.28□□□□□ -1.88
SCFD1-216ENST00000555550 ZNRF4Q8WWF5 429 aa3.28□□□□□ -1.88
SCFD1-216ENST00000555550 FAM120BQ96EK7 910 aaKnown RBP3.28□□□□□ -1.88
SCFD1-216ENST00000555550 BTBD10Q9BSF8 475 aa3.28□□□□□ -1.88
SCFD1-216ENST00000555550 PPANQ9NQ55 473 aaKnown RBP3.28□□□□□ -1.88
SCFD1-216ENST00000555550 FGF21Q9NSA1 209 aa3.28□□□□□ -1.88
SCFD1-216ENST00000555550 HAUS2Q9NVX0 235 aa3.28□□□□□ -1.88
SCFD1-216ENST00000555550 ZNF69Q9UC07 566 aa3.28□□□□□ -1.88
SCFD1-216ENST00000555550 ASIC3Q9UHC3 531 aa3.28□□□□□ -1.88
SCFD1-216ENST00000555550 OR2A25A4D2G3 310 aa3.27□□□□□ -1.89
SCFD1-216ENST00000555550 PAPSS1O43252 624 aaPredicted RBP3.27□□□□□ -1.89
SCFD1-216ENST00000555550 DFFBO76075 338 aa3.27□□□□□ -1.89
SCFD1-216ENST00000555550 BCL10O95999 233 aa3.27□□□□□ -1.89
SCFD1-216ENST00000555550 SAT1P21673 171 aa3.27□□□□□ -1.89
SCFD1-216ENST00000555550 NRIP1P48552 1158 aa3.27□□□□□ -1.89
SCFD1-216ENST00000555550 SLC9A3P48764 834 aa3.27□□□□□ -1.89
SCFD1-216ENST00000555550 NAP1L1P55209 391 aaKnown RBP3.27□□□□□ -1.89
SCFD1-216ENST00000555550 SLC8A3P57103 927 aa3.27□□□□□ -1.89
SCFD1-216ENST00000555550 GSDMDP57764 484 aa3.27□□□□□ -1.89
SCFD1-216ENST00000555550 B3GALT5-AS1P59052 145 aa3.27□□□□□ -1.89
SCFD1-216ENST00000555550 GRAPQ13588 217 aa3.27□□□□□ -1.89
SCFD1-216ENST00000555550 ENPP2Q13822 863 aa3.27□□□□□ -1.89
SCFD1-216ENST00000555550 ITPRIPL2Q3MIP1 535 aa3.27□□□□□ -1.89
SCFD1-216ENST00000555550 PHLDA2Q53GA4 152 aa3.27□□□□□ -1.89
SCFD1-216ENST00000555550 KLHL26Q53HC5 615 aa3.27□□□□□ -1.89
SCFD1-216ENST00000555550 PLEKHS1Q5SXH7 462 aa3.27□□□□□ -1.89
SCFD1-216ENST00000555550 FIP1L1Q6UN15 594 aaKnown RBP3.27□□□□□ -1.89
SCFD1-216ENST00000555550 KRTAP5-5Q701N2 237 aaPredicted RBP3.27□□□□□ -1.89
SCFD1-216ENST00000555550 SZRD1Q7Z422 152 aa3.27□□□□□ -1.89
SCFD1-216ENST00000555550 PTAR1Q7Z6K3 402 aaPredicted RBP3.27□□□□□ -1.89
SCFD1-216ENST00000555550 RTN4RL2Q86UN3 420 aa3.27□□□□□ -1.89
SCFD1-216ENST00000555550 KIRREL3Q8IZU9 778 aa3.27□□□□□ -1.89
SCFD1-216ENST00000555550 EID3Q8N140 333 aa3.27□□□□□ -1.89
SCFD1-216ENST00000555550 GPRC5AQ8NFJ5 357 aa3.27□□□□□ -1.89
SCFD1-216ENST00000555550 VANGL1Q8TAA9 524 aaPredicted RBP3.27□□□□□ -1.89
SCFD1-216ENST00000555550 PHLDA1Q8WV24 401 aaPredicted RBP3.27□□□□□ -1.89
SCFD1-216ENST00000555550 SKA1Q96BD8 255 aa3.27□□□□□ -1.89
SCFD1-216ENST00000555550 USP28Q96RU2 1077 aa3.27□□□□□ -1.89
SCFD1-216ENST00000555550 FNBP1Q96RU3 617 aa3.27□□□□□ -1.89
SCFD1-216ENST00000555550 MIS12Q9H081 205 aa3.27□□□□□ -1.89
SCFD1-216ENST00000555550 UPF3AQ9H1J1 476 aaKnown RBP3.27□□□□□ -1.89
SCFD1-216ENST00000555550 MMP27Q9H306 513 aa3.27□□□□□ -1.89
SCFD1-216ENST00000555550 ATP13A3Q9H7F0 1226 aa3.27□□□□□ -1.89
SCFD1-216ENST00000555550 CCDC177Q9NQR7 707 aaPredicted RBP3.27□□□□□ -1.89
SCFD1-216ENST00000555550 P4HTMQ9NXG6 502 aa3.27□□□□□ -1.89
SCFD1-216ENST00000555550 ERAP1Q9NZ08 941 aa3.27□□□□□ -1.89
SCFD1-216ENST00000555550 STK26Q9P289 416 aa3.27□□□□□ -1.89
SCFD1-216ENST00000555550 B3GAT1Q9P2W7 334 aa3.27□□□□□ -1.89
SCFD1-216ENST00000555550 DAPK2Q9UIK4 370 aa3.27□□□□□ -1.89
SCFD1-216ENST00000555550 TUBE1Q9UJT0 475 aa3.27□□□□□ -1.89
SCFD1-216ENST00000555550 GRID1Q9ULK0 1009 aa3.27□□□□□ -1.89
SCFD1-216ENST00000555550 PPP1R3CQ9UQK1 317 aa3.27□□□□□ -1.89
SCFD1-216ENST00000555550 MOB4Q9Y3A3 225 aa3.27□□□□□ -1.89
SCFD1-216ENST00000555550 PTRH2Q9Y3E5 179 aaKnown RBP3.27□□□□□ -1.89
SCFD1-216ENST00000555550 CROCCQ5TZA2 2017 aa3.27□□□□□ -1.89
SCFD1-216ENST00000555550 FSD2A1L4K1 749 aa3.26□□□□□ -1.89
SCFD1-216ENST00000555550 A6NCN8 305 aa3.26□□□□□ -1.89
SCFD1-216ENST00000555550 ANKUB1A6NFN9 424 aa3.26□□□□□ -1.89
SCFD1-216ENST00000555550 MEIS2O14770 477 aa3.26□□□□□ -1.89
SCFD1-216ENST00000555550 IPO8O15397 1037 aaKnown RBP3.26□□□□□ -1.89
SCFD1-216ENST00000555550 DOK2O60496 412 aa3.26□□□□□ -1.89
SCFD1-216ENST00000555550 MAGEC1O60732 1142 aa3.26□□□□□ -1.89
SCFD1-216ENST00000555550 KHDRBS3O75525 346 aaKnown RBP3.26□□□□□ -1.89
SCFD1-216ENST00000555550 TSPAN9O75954 239 aa3.26□□□□□ -1.89
SCFD1-216ENST00000555550 PAX3P23760 479 aa3.26□□□□□ -1.89
SCFD1-216ENST00000555550 MMP12P39900 470 aa3.26□□□□□ -1.89
SCFD1-216ENST00000555550 MNDAP41218 407 aa3.26□□□□□ -1.89
SCFD1-216ENST00000555550 PAX9P55771 341 aa3.26□□□□□ -1.89
SCFD1-216ENST00000555550 CREB5Q02930 508 aa3.26□□□□□ -1.89
SCFD1-216ENST00000555550 DRP2Q13474 957 aa3.26□□□□□ -1.89
SCFD1-216ENST00000555550 IL27RAQ6UWB1 636 aa3.26□□□□□ -1.89
SCFD1-216ENST00000555550 C1orf122Q6ZSJ8 110 aa3.26□□□□□ -1.89
SCFD1-216ENST00000555550 KBTBD6Q86V97 674 aa3.26□□□□□ -1.89
SCFD1-216ENST00000555550 CEP57Q86XR8 500 aa3.26□□□□□ -1.89
SCFD1-216ENST00000555550 CEP57L1Q8IYX8 460 aa3.26□□□□□ -1.89
SCFD1-216ENST00000555550 DCLK2Q8N568 766 aa3.26□□□□□ -1.89
SCFD1-216ENST00000555550 OR13C3Q8NGS6 347 aa3.26□□□□□ -1.89
SCFD1-216ENST00000555550 ZNF300Q96RE9 604 aaPredicted RBP3.26□□□□□ -1.89
SCFD1-216ENST00000555550 PKP2Q99959 881 aa3.26□□□□□ -1.89
SCFD1-216ENST00000555550 SPHK1Q9NYA1 384 aa3.26□□□□□ -1.89
SCFD1-216ENST00000555550 TNNQ9UQP3 1299 aa3.26□□□□□ -1.89
SCFD1-216ENST00000555550 ANGPTL3Q9Y5C1 460 aa3.26□□□□□ -1.89
SCFD1-216ENST00000555550 MSGN1A6NI15 193 aa3.25□□□□□ -1.89
SCFD1-216ENST00000555550 KPNA7A9QM74 516 aa3.25□□□□□ -1.89
SCFD1-216ENST00000555550 WDPCPO95876 746 aa3.25□□□□□ -1.89
SCFD1-216ENST00000555550 OR2T7P0C7T2 308 aa3.25□□□□□ -1.89
SCFD1-216ENST00000555550 IGHV4-31P0DP07 118 aa3.25□□□□□ -1.89
SCFD1-216ENST00000555550 HSPA8P11142 646 aaKnown RBP3.25□□□□□ -1.89
SCFD1-216ENST00000555550 ACADSP16219 412 aa3.25□□□□□ -1.89
SCFD1-216ENST00000555550 CAPN3P20807 821 aa3.25□□□□□ -1.89
SCFD1-216ENST00000555550 CDH3P22223 829 aa3.25□□□□□ -1.89
SCFD1-216ENST00000555550 JAK1P23458 1154 aa3.25□□□□□ -1.89
SCFD1-216ENST00000555550 CHAF1BQ13112 559 aa3.25□□□□□ -1.89
SCFD1-216ENST00000555550 NECTIN1Q15223 517 aa3.25□□□□□ -1.89
SCFD1-216ENST00000555550 ODF4Q2M2E3 257 aa3.25□□□□□ -1.89
SCFD1-216ENST00000555550 CTU2Q2VPK5 515 aaKnown RBP3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms