RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 AEBP2Q6ZN18 517 aaPredicted RBP29.47■■■□□ 2.31
SCFD1-216ENST00000555550 CHIC1Q5VXU3 224 aa27.84■■■□□ 2.05
SCFD1-216ENST00000555550 SENP3Q9H4L4 574 aaPredicted RBP25.04■■□□□ 1.6
SCFD1-216ENST00000555550 PHF23Q9BUL5 403 aaPredicted RBP24.8■■□□□ 1.56
SCFD1-216ENST00000555550 FOXD1Q16676 465 aa23.43■■□□□ 1.34
SCFD1-216ENST00000555550 PLPPR3Q6T4P5 718 aa22.2■■□□□ 1.14
SCFD1-216ENST00000555550 PPP6R1Q9UPN7 881 aa21.92■■□□□ 1.1
SCFD1-216ENST00000555550 MSH5O43196 834 aa21.86■■□□□ 1.09
SCFD1-216ENST00000555550 PIAS4Q8N2W9 510 aaPredicted RBP21.86■■□□□ 1.09
SCFD1-216ENST00000555550 ADRA2BP18089 450 aa21.84■■□□□ 1.09
SCFD1-216ENST00000555550 POTEDQ86YR6 584 aa21.55■■□□□ 1.04
SCFD1-216ENST00000555550 MAPK8IP2Q13387 824 aaPredicted RBP20.12■□□□□ 0.81
SCFD1-216ENST00000555550 SCAF1Q9H7N4 1312 aaKnown RBP19.87■□□□□ 0.77
SCFD1-216ENST00000555550 DMRT2Q9Y5R5 561 aa19.86■□□□□ 0.77
SCFD1-216ENST00000555550 PPP4R3CPQ6ZMV5 832 aa19.5■□□□□ 0.71
SCFD1-216ENST00000555550 DCAF8L1A6NGE4 600 aa19.17■□□□□ 0.66
SCFD1-216ENST00000555550 HOXD11P31277 338 aaPredicted RBP19.1■□□□□ 0.65
SCFD1-216ENST00000555550 CNKSR2Q8WXI2 1034 aa19.1■□□□□ 0.65
SCFD1-216ENST00000555550 RNF216Q9NWF9 866 aaPredicted RBP18.93■□□□□ 0.62
SCFD1-216ENST00000555550 CACNB1Q02641 598 aaPredicted RBP18.9■□□□□ 0.62
SCFD1-216ENST00000555550 RNF39Q9H2S5 420 aa18.69■□□□□ 0.58
SCFD1-216ENST00000555550 NCBP3Q53F19 620 aaKnown RBP18.67■□□□□ 0.58
SCFD1-216ENST00000555550 NPM3O75607 178 aaKnown RBP18.45■□□□□ 0.54
SCFD1-216ENST00000555550 C1QBPQ07021 282 aaKnown RBP18.38■□□□□ 0.53
SCFD1-216ENST00000555550 DNAJC5BQ9UF47 199 aa18.36■□□□□ 0.53
SCFD1-216ENST00000555550 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.26■□□□□ 0.51
SCFD1-216ENST00000555550 KCNA4P22459 653 aa18.07■□□□□ 0.48
SCFD1-216ENST00000555550 U3KPZ7 1027 aaPredicted RBP17.84■□□□□ 0.45
SCFD1-216ENST00000555550 SPINK5Q9NQ38 1064 aaPredicted RBP17.67■□□□□ 0.42
SCFD1-216ENST00000555550 SLC4A2P04920 1241 aa17.66■□□□□ 0.42
SCFD1-216ENST00000555550 CAPN15O75808 1086 aa17.62■□□□□ 0.41
SCFD1-216ENST00000555550 DSG3P32926 999 aa17.5■□□□□ 0.39
SCFD1-216ENST00000555550 TRHP20396 242 aaPredicted RBP17.34■□□□□ 0.37
SCFD1-216ENST00000555550 ABCB7O75027 752 aa17.24■□□□□ 0.35
SCFD1-216ENST00000555550 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.23■□□□□ 0.35
SCFD1-216ENST00000555550 APLP2Q06481 763 aa17.23■□□□□ 0.35
SCFD1-216ENST00000555550 HNRNPUL2Q1KMD3 747 aaKnown RBP17.23■□□□□ 0.35
SCFD1-216ENST00000555550 ZNF219Q9P2Y4 722 aaPredicted RBP17.2■□□□□ 0.34
SCFD1-216ENST00000555550 SAMD1Q6SPF0 538 aaPredicted RBP17.16■□□□□ 0.34
SCFD1-216ENST00000555550 SLC4A1APQ9BWU0 796 aaKnown RBP17.02■□□□□ 0.32
SCFD1-216ENST00000555550 MYCNP04198 464 aaPredicted RBP17.01■□□□□ 0.31
SCFD1-216ENST00000555550 POTEHQ6S545 545 aa16.86■□□□□ 0.29
SCFD1-216ENST00000555550 POLA2Q14181 598 aa16.85■□□□□ 0.29
SCFD1-216ENST00000555550 FOXD4L1Q9NU39 408 aa16.82■□□□□ 0.28
SCFD1-216ENST00000555550 ATF5Q9Y2D1 282 aaPredicted RBP16.75■□□□□ 0.27
SCFD1-216ENST00000555550 ZBTB22O15209 634 aa16.62■□□□□ 0.25
SCFD1-216ENST00000555550 RBM42Q9BTD8 480 aaKnown RBP16.62■□□□□ 0.25
SCFD1-216ENST00000555550 CHRDL2Q6WN34 429 aa16.36■□□□□ 0.21
SCFD1-216ENST00000555550 ZBTB12Q9Y330 459 aaPredicted RBP16.36■□□□□ 0.21
SCFD1-216ENST00000555550 OSCARQ8IYS5 282 aa16.29■□□□□ 0.2
SCFD1-216ENST00000555550 ATXN8OSP0DMR3 200 aa16.26■□□□□ 0.19
SCFD1-216ENST00000555550 AKT1S1Q96B36 256 aa16.26■□□□□ 0.19
SCFD1-216ENST00000555550 REM2Q8IYK8 340 aaPredicted RBP16.16■□□□□ 0.18
SCFD1-216ENST00000555550 FBLN2P98095 1184 aa16■□□□□ 0.15
SCFD1-216ENST00000555550 PITPNM1O00562 1244 aa15.98■□□□□ 0.15
SCFD1-216ENST00000555550 PIP4P2Q8N4L2 257 aa15.97■□□□□ 0.15
SCFD1-216ENST00000555550 MKRN4PQ13434 485 aaPredicted RBP15.93■□□□□ 0.14
SCFD1-216ENST00000555550 SPDYE2BA6NHP3 402 aa15.9■□□□□ 0.14
SCFD1-216ENST00000555550 SPDYE6P0CI01 402 aa15.9■□□□□ 0.14
SCFD1-216ENST00000555550 SPDYE2Q495Y8 402 aa15.9■□□□□ 0.14
SCFD1-216ENST00000555550 FXR2P51116 673 aaKnown RBP eCLIP15.84■□□□□ 0.13
SCFD1-216ENST00000555550 CSRNP3Q8WYN3 585 aa15.79■□□□□ 0.12
SCFD1-216ENST00000555550 ZNF692Q9BU19 519 aaPredicted RBP15.77■□□□□ 0.12
SCFD1-216ENST00000555550 SP7Q8TDD2 431 aaPredicted RBP15.76■□□□□ 0.11
SCFD1-216ENST00000555550 HAX1O00165 279 aa15.74■□□□□ 0.11
SCFD1-216ENST00000555550 CLEC11AQ9Y240 323 aa15.73■□□□□ 0.11
SCFD1-216ENST00000555550 SSUH2Q9Y2M2 353 aa15.68■□□□□ 0.1
SCFD1-216ENST00000555550 SPDYE1Q8NFV5 336 aaPredicted RBP15.65■□□□□ 0.1
SCFD1-216ENST00000555550 EHMT2Q96KQ7 1210 aa15.59■□□□□ 0.09
SCFD1-216ENST00000555550 PRKAR2AP13861 404 aaKnown RBP15.58■□□□□ 0.08
SCFD1-216ENST00000555550 EVX2Q03828 476 aa15.58■□□□□ 0.08
SCFD1-216ENST00000555550 PABPN1Q86U42 306 aaKnown RBP eCLIP15.54■□□□□ 0.085e-6■■■■□ 22.2
SCFD1-216ENST00000555550 CHADLQ6NUI6 762 aa15.45■□□□□ 0.06
SCFD1-216ENST00000555550 PRR29P0C7W0 189 aa15.42■□□□□ 0.06
SCFD1-216ENST00000555550 C19orf67A6NJJ6 358 aa15.33■□□□□ 0.04
SCFD1-216ENST00000555550 GABBR2O75899 941 aa15.17■□□□□ 0.02
SCFD1-216ENST00000555550 FARP1Q9Y4F1 1045 aaPredicted RBP15.15■□□□□ 0.02
SCFD1-216ENST00000555550 SPDYE4A6NLX3 237 aa15.12■□□□□ 0.01
SCFD1-216ENST00000555550 CD44P16070 742 aaKnown RBP15.07■□□□□ 0
SCFD1-216ENST00000555550 STAG3Q9UJ98 1225 aa15.02■□□□□ -0
SCFD1-216ENST00000555550 CREBZFQ9NS37 354 aa15.01□□□□□ -0.01
SCFD1-216ENST00000555550 ZRANB1Q9UGI0 708 aa14.87□□□□□ -0.03
SCFD1-216ENST00000555550 POTEIP0CG38 1075 aa14.86□□□□□ -0.03
SCFD1-216ENST00000555550 LHX8Q68G74 356 aa14.81□□□□□ -0.04
SCFD1-216ENST00000555550 ZNF579Q8NAF0 562 aaKnown RBP14.78□□□□□ -0.04
SCFD1-216ENST00000555550 CLCN6P51797 869 aa14.76□□□□□ -0.05
SCFD1-216ENST00000555550 MNX1P50219 401 aaPredicted RBP14.73□□□□□ -0.05
SCFD1-216ENST00000555550 DCBLD2Q96PD2 775 aa14.73□□□□□ -0.05
SCFD1-216ENST00000555550 NPM1P06748 294 aaKnown RBP eCLIP14.7□□□□□ -0.06
SCFD1-216ENST00000555550 GALR2O43603 387 aaPredicted RBP14.69□□□□□ -0.06
SCFD1-216ENST00000555550 PROM2Q8N271 834 aa14.68□□□□□ -0.06
SCFD1-216ENST00000555550 PAK3O75914 559 aaPredicted RBP14.67□□□□□ -0.06
SCFD1-216ENST00000555550 PHF12Q96QT6 1004 aa14.67□□□□□ -0.06
SCFD1-216ENST00000555550 TSPYL2Q9H2G4 693 aaPredicted RBP14.52□□□□□ -0.09
SCFD1-216ENST00000555550 MIER1Q8N108 512 aa14.49□□□□□ -0.09
SCFD1-216ENST00000555550 MS4A3Q96HJ5 214 aa14.45□□□□□ -0.1
SCFD1-216ENST00000555550 PELP1Q8IZL8 1130 aaKnown RBP14.44□□□□□ -0.1
SCFD1-216ENST00000555550 POTEB2H3BUK9 544 aa14.4□□□□□ -0.1
SCFD1-216ENST00000555550 CCDC61Q9Y6R9 512 aa14.39□□□□□ -0.11
SCFD1-216ENST00000555550 PLEKHG5O94827 1062 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms