RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 TLK1Q9UKI8 766 aa14.17□□□□□ -0.14
SDC1-204ENST00000429035 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.17□□□□□ -0.14
SDC1-204ENST00000429035 PIKFYVEQ9Y2I7 2098 aa14.17□□□□□ -0.14
SDC1-204ENST00000429035 GOLGA6L3A6NEY3 463 aa14.16□□□□□ -0.14
SDC1-204ENST00000429035 C2orf81A6NN90 581 aa14.16□□□□□ -0.14
SDC1-204ENST00000429035 CPNE3O75131 537 aaKnown RBP14.16□□□□□ -0.14
SDC1-204ENST00000429035 ANXA9O76027 345 aa14.16□□□□□ -0.14
SDC1-204ENST00000429035 SRP72O76094 671 aaKnown RBP14.16□□□□□ -0.14
SDC1-204ENST00000429035 POLBP06746 335 aa14.16□□□□□ -0.14
SDC1-204ENST00000429035 POLR2CP19387 275 aaPredicted RBP14.16□□□□□ -0.14
SDC1-204ENST00000429035 LPOP22079 712 aaPredicted RBP14.16□□□□□ -0.14
SDC1-204ENST00000429035 CDH3P22223 829 aa14.16□□□□□ -0.14
SDC1-204ENST00000429035 PSMB4P28070 264 aa14.16□□□□□ -0.14
SDC1-204ENST00000429035 RPS15P62841 145 aaKnown RBP14.16□□□□□ -0.14
SDC1-204ENST00000429035 PRKAA1Q13131 559 aa14.16□□□□□ -0.14
SDC1-204ENST00000429035 TMTC4Q5T4D3 741 aa14.16□□□□□ -0.14
SDC1-204ENST00000429035 TCTN3Q6NUS6 607 aa14.16□□□□□ -0.14
SDC1-204ENST00000429035 DAAM2Q86T65 1068 aa14.16□□□□□ -0.14
SDC1-204ENST00000429035 KMT5CQ86Y97 462 aa14.16□□□□□ -0.14
SDC1-204ENST00000429035 RMDN2Q96LZ7 410 aa14.16□□□□□ -0.14
SDC1-204ENST00000429035 PPM1MQ96MI6 270 aa14.16□□□□□ -0.14
SDC1-204ENST00000429035 FAM118BQ9BPY3 351 aa14.16□□□□□ -0.14
SDC1-204ENST00000429035 TLR10Q9BXR5 811 aa14.16□□□□□ -0.14
SDC1-204ENST00000429035 TRIM55Q9BYV6 548 aa14.16□□□□□ -0.14
SDC1-204ENST00000429035 AKIRIN1Q9H9L7 192 aaPredicted RBP14.16□□□□□ -0.14
SDC1-204ENST00000429035 FANCEQ9HB96 536 aa14.16□□□□□ -0.14
SDC1-204ENST00000429035 TRHDEQ9UKU6 1024 aa14.16□□□□□ -0.14
SDC1-204ENST00000429035 PCDHGA6Q9Y5G7 932 aa14.16□□□□□ -0.14
SDC1-204ENST00000429035 DNMT3AQ9Y6K1 912 aaPredicted RBP14.16□□□□□ -0.14
SDC1-204ENST00000429035 MAST4O15021 2626 aa14.16□□□□□ -0.14
SDC1-204ENST00000429035 MED13Q9UHV7 2174 aa14.16□□□□□ -0.14
SDC1-204ENST00000429035 GSAPA4D1B5 854 aa14.15□□□□□ -0.14
SDC1-204ENST00000429035 MGAT4DA6NG13 374 aa14.15□□□□□ -0.14
SDC1-204ENST00000429035 ARGFXA6NJG6 315 aa14.15□□□□□ -0.14
SDC1-204ENST00000429035 ATXN8OSP0DMR3 200 aa14.15□□□□□ -0.14
SDC1-204ENST00000429035 RALBP11234 206 aa14.15□□□□□ -0.14
SDC1-204ENST00000429035 KPNA2P52292 529 aaKnown RBP14.15□□□□□ -0.14
SDC1-204ENST00000429035 TUBB4BP68371 445 aa14.15□□□□□ -0.14
SDC1-204ENST00000429035 HSD11B2P80365 405 aa14.15□□□□□ -0.14
SDC1-204ENST00000429035 IL10RAQ13651 578 aa14.15□□□□□ -0.14
SDC1-204ENST00000429035 TUBB2AQ13885 445 aa14.15□□□□□ -0.14
SDC1-204ENST00000429035 PRPSAP1Q14558 356 aa14.15□□□□□ -0.14
SDC1-204ENST00000429035 TAF1AQ15573 450 aaPredicted RBP14.15□□□□□ -0.14
SDC1-204ENST00000429035 METRNLQ641Q3 311 aa14.15□□□□□ -0.14
SDC1-204ENST00000429035 CDKL3Q8IVW4 592 aaPredicted RBP14.15□□□□□ -0.14
SDC1-204ENST00000429035 CFAP206Q8IYR0 622 aa14.15□□□□□ -0.14
SDC1-204ENST00000429035 RCOR2Q8IZ40 523 aa14.15□□□□□ -0.14
SDC1-204ENST00000429035 LILRA3Q8N6C8 439 aaPredicted RBP14.15□□□□□ -0.14
SDC1-204ENST00000429035 OR13C4Q8NGS5 318 aa14.15□□□□□ -0.14
SDC1-204ENST00000429035 MIB2Q96AX9 1013 aa14.15□□□□□ -0.14
SDC1-204ENST00000429035 TUBB2BQ9BVA1 445 aa14.15□□□□□ -0.14
SDC1-204ENST00000429035 SLC7A5P2Q9GIP4 190 aa14.15□□□□□ -0.14
SDC1-204ENST00000429035 FAM96AQ9H5X1 160 aa14.15□□□□□ -0.14
SDC1-204ENST00000429035 KIR3DX1Q9H7L2 352 aa14.15□□□□□ -0.14
SDC1-204ENST00000429035 ACSS2Q9NR19 701 aa14.15□□□□□ -0.14
SDC1-204ENST00000429035 SLC24A2Q9UI40 661 aa14.15□□□□□ -0.14
SDC1-204ENST00000429035 CFAP99D6REC4 459 aa14.14□□□□□ -0.15
SDC1-204ENST00000429035 APOC4-APOC2K7ER74 178 aa14.14□□□□□ -0.15
SDC1-204ENST00000429035 CCL22O00626 93 aa14.14□□□□□ -0.15
SDC1-204ENST00000429035 KCNN4O15554 427 aa14.14□□□□□ -0.15
SDC1-204ENST00000429035 STK10O94804 968 aaKnown RBP14.14□□□□□ -0.15
SDC1-204ENST00000429035 ZBTB11O95625 1053 aaPredicted RBP14.14□□□□□ -0.15
SDC1-204ENST00000429035 APOC2P02655 101 aa14.14□□□□□ -0.15
SDC1-204ENST00000429035 PDGFAP04085 211 aa14.14□□□□□ -0.15
SDC1-204ENST00000429035 ITGALP20701 1170 aa14.14□□□□□ -0.15
SDC1-204ENST00000429035 NDUFS1P28331 727 aa14.14□□□□□ -0.15
SDC1-204ENST00000429035 PTPN4P29074 926 aa14.14□□□□□ -0.15
SDC1-204ENST00000429035 NAP1L1P55209 391 aaKnown RBP14.14□□□□□ -0.15
SDC1-204ENST00000429035 OTUD4Q01804 1114 aaKnown RBP14.14□□□□□ -0.15
SDC1-204ENST00000429035 SRSF1Q07955 248 aaKnown RBP eCLIP14.14□□□□□ -0.15
SDC1-204ENST00000429035 GPS2Q13227 327 aa14.14□□□□□ -0.15
SDC1-204ENST00000429035 SEMA5AQ13591 1074 aa14.14□□□□□ -0.15
SDC1-204ENST00000429035 TCEAL1Q15170 157 aa14.14□□□□□ -0.15
SDC1-204ENST00000429035 SPA17Q15506 151 aa14.14□□□□□ -0.15
SDC1-204ENST00000429035 BCL7AQ4VC05 210 aa14.14□□□□□ -0.15
SDC1-204ENST00000429035 PRAMEF17Q5VTA0 474 aa14.14□□□□□ -0.15
SDC1-204ENST00000429035 C11orf63Q6NUN7 778 aa14.14□□□□□ -0.15
SDC1-204ENST00000429035 BBS12Q6ZW61 710 aa14.14□□□□□ -0.15
SDC1-204ENST00000429035 SYVN1Q86TM6 617 aa14.14□□□□□ -0.15
SDC1-204ENST00000429035 D2HGDHQ8N465 521 aa14.14□□□□□ -0.15
SDC1-204ENST00000429035 EFCAB3Q8N7B9 438 aa14.14□□□□□ -0.15
SDC1-204ENST00000429035 OR4E2Q8NGC2 313 aa14.14□□□□□ -0.15
SDC1-204ENST00000429035 OR2L2Q8NH16 312 aa14.14□□□□□ -0.15
SDC1-204ENST00000429035 HM13Q8TCT9 377 aa14.14□□□□□ -0.15
SDC1-204ENST00000429035 DTX3LQ8TDB6 740 aa14.14□□□□□ -0.15
SDC1-204ENST00000429035 CLIP3Q96DZ5 547 aa14.14□□□□□ -0.15
SDC1-204ENST00000429035 GORASP1Q9BQQ3 440 aa14.14□□□□□ -0.15
SDC1-204ENST00000429035 SEMA5BQ9P283 1151 aa14.14□□□□□ -0.15
SDC1-204ENST00000429035 ACSL5Q9ULC5 683 aa14.14□□□□□ -0.15
SDC1-204ENST00000429035 SNX7Q9UNH6 387 aa14.14□□□□□ -0.15
SDC1-204ENST00000429035 COLEC10Q9Y6Z7 277 aa14.14□□□□□ -0.15
SDC1-204ENST00000429035 COL12A1Q99715 3063 aa14.13□□□□□ -0.15
SDC1-204ENST00000429035 SPENQ96T58 3664 aaKnown RBP14.13□□□□□ -0.15
SDC1-204ENST00000429035 TTLL8A6PVC2 850 aa14.13□□□□□ -0.15
SDC1-204ENST00000429035 TMEM150CB9EJG8 249 aa14.13□□□□□ -0.15
SDC1-204ENST00000429035 CRTAMO95727 393 aa14.13□□□□□ -0.15
SDC1-204ENST00000429035 CCL11P51671 97 aa14.13□□□□□ -0.15
SDC1-204ENST00000429035 PGDP52209 483 aa14.13□□□□□ -0.15
SDC1-204ENST00000429035 EIF3EP60228 445 aaKnown RBP14.13□□□□□ -0.15
SDC1-204ENST00000429035 SPARCL1Q14515 664 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms