RNA–Protein interactions for RNA: YNL223W

ATG4, Transcript of Conserved cysteine protease required for autophagy, yeastyeast

Gene ATG4, Length 1,485 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
ATG4YNL223W PTC5Q12511 572 aa6.73□□□□□ -1.33
ATG4YNL223W YLR278CQ05854 1341 aa6.72□□□□□ -1.33
ATG4YNL223W TUB2P02557 457 aaKnown RBP6.72□□□□□ -1.33
ATG4YNL223W CBP1P07252 654 aa6.72□□□□□ -1.33
ATG4YNL223W YKT6P36015 200 aaKnown RBP6.72□□□□□ -1.33
ATG4YNL223W CUE3P53137 624 aaKnown RBP6.72□□□□□ -1.33
ATG4YNL223W SNU71P53207 620 aaKnown RBP6.72□□□□□ -1.33
ATG4YNL223W GIS4Q04233 774 aa6.72□□□□□ -1.33
ATG4YNL223W SGD1Q06132 899 aa6.72□□□□□ -1.33
ATG4YNL223W SSA1P10591 642 aaKnown RBP6.71□□□□□ -1.34
ATG4YNL223W SAM2P19358 384 aaKnown RBP6.71□□□□□ -1.34
ATG4YNL223W MCM3P24279 971 aaKnown RBP6.71□□□□□ -1.34
ATG4YNL223W CCT3P39077 534 aaKnown RBP6.71□□□□□ -1.34
ATG4YNL223W NIT1P40447 199 aa6.71□□□□□ -1.34
ATG4YNL223W EMP47P43555 445 aa6.71□□□□□ -1.34
ATG4YNL223W SSL2Q00578 843 aa6.71□□□□□ -1.34
ATG4YNL223W VMS1Q04311 632 aaKnown RBP6.71□□□□□ -1.34
ATG4YNL223W LAP2Q10740 671 aa6.71□□□□□ -1.34
ATG4YNL223W NBL1Q3E7Y6 73 aa6.71□□□□□ -1.34
ATG4YNL223W THS1P04801 734 aaKnown RBP6.7□□□□□ -1.34
ATG4YNL223W TAF13P11747 167 aa6.7□□□□□ -1.34
ATG4YNL223W ATE1P16639 503 aa6.7□□□□□ -1.34
ATG4YNL223W ALG1P16661 449 aa6.7□□□□□ -1.34
ATG4YNL223W MAK11P20484 414 aaKnown RBP6.7□□□□□ -1.34
ATG4YNL223W RTG2P32608 588 aaKnown RBP6.7□□□□□ -1.34
ATG4YNL223W MRPL10P36520 322 aa6.7□□□□□ -1.34
ATG4YNL223W VPS45P38932 577 aa6.7□□□□□ -1.34
ATG4YNL223W EIS1Q05050 843 aaKnown RBP6.7□□□□□ -1.34
ATG4YNL223W MMR1Q06324 491 aa6.7□□□□□ -1.34
ATG4YNL223W AIM7Q12156 149 aa6.7□□□□□ -1.34
ATG4YNL223W TIP41Q12199 356 aa6.7□□□□□ -1.34
ATG4YNL223W RPL22AP05749 121 aaKnown RBP6.69□□□□□ -1.34
ATG4YNL223W BMH1P29311 267 aaKnown RBP6.69□□□□□ -1.34
ATG4YNL223W SRP40P32583 406 aaPredicted RBP6.69□□□□□ -1.34
ATG4YNL223W VPS29P38759 282 aa6.69□□□□□ -1.34
ATG4YNL223W RRM3P38766 723 aa6.69□□□□□ -1.34
ATG4YNL223W TIF4631P39935 952 aaKnown RBP6.69□□□□□ -1.34
ATG4YNL223W LYS14P40971 790 aa6.69□□□□□ -1.34
ATG4YNL223W ASE1P50275 885 aa6.69□□□□□ -1.34
ATG4YNL223W RET3P53600 189 aa6.69□□□□□ -1.34
ATG4YNL223W YOR296WQ08748 1289 aa6.69□□□□□ -1.34
ATG4YNL223W THR4P16120 514 aaKnown RBP6.68□□□□□ -1.34
ATG4YNL223W GSY2P27472 705 aa6.68□□□□□ -1.34
ATG4YNL223W MPE1P35728 441 aaKnown RBP6.68□□□□□ -1.34
ATG4YNL223W STT3P39007 718 aaKnown RBP6.68□□□□□ -1.34
ATG4YNL223W FYV10P40492 516 aa6.68□□□□□ -1.34
ATG4YNL223W TRS120Q04183 1289 aa6.68□□□□□ -1.34
ATG4YNL223W SUE1Q06524 206 aa6.68□□□□□ -1.34
ATG4YNL223W VIP1Q06685 1146 aaKnown RBP6.68□□□□□ -1.34
ATG4YNL223W CSR2Q12734 1121 aa6.68□□□□□ -1.34
ATG4YNL223W SEC20P28791 383 aa6.67□□□□□ -1.34
ATG4YNL223W MIC60P36112 540 aa6.67□□□□□ -1.34
ATG4YNL223W TPS3P38426 1054 aaKnown RBP6.67□□□□□ -1.34
ATG4YNL223W DAK2P43550 591 aa6.67□□□□□ -1.34
ATG4YNL223W RTC4P53850 401 aa6.67□□□□□ -1.34
ATG4YNL223W SMD2Q06217 110 aaKnown RBP6.67□□□□□ -1.34
ATG4YNL223W YPR148CQ06523 435 aa6.67□□□□□ -1.34
ATG4YNL223W HIS4P00815 799 aaKnown RBP6.66□□□□□ -1.34
ATG4YNL223W GAL2P13181 574 aa6.66□□□□□ -1.34
ATG4YNL223W KRS1P15180 591 aaKnown RBP6.66□□□□□ -1.34
ATG4YNL223W RPL8AP17076 256 aaKnown RBP6.66□□□□□ -1.34
ATG4YNL223W MCM2P29469 868 aa6.66□□□□□ -1.34
ATG4YNL223W ACA1P39970 489 aa6.66□□□□□ -1.34
ATG4YNL223W TPM2P40414 161 aa6.66□□□□□ -1.34
ATG4YNL223W YGR153WP48238 217 aa6.66□□□□□ -1.34
ATG4YNL223W LSB1P53281 241 aa6.66□□□□□ -1.34
ATG4YNL223W UTP4Q06679 776 aaKnown RBP6.66□□□□□ -1.34
ATG4YNL223W SLK19Q08581 821 aaKnown RBP6.66□□□□□ -1.34
ATG4YNL223W ERG12P07277 443 aa6.66□□□□□ -1.34
ATG4YNL223W SAS3P34218 831 aa6.66□□□□□ -1.34
ATG4YNL223W NOC2P39744 710 aaKnown RBP6.66□□□□□ -1.34
ATG4YNL223W ATG32P40458 529 aa6.66□□□□□ -1.34
ATG4YNL223W CIT3P43635 486 aa6.66□□□□□ -1.34
ATG4YNL223W SOL4P53315 255 aa6.66□□□□□ -1.34
ATG4YNL223W DSE4P53753 1117 aa6.66□□□□□ -1.34
ATG4YNL223W BNI5P53890 448 aaKnown RBP6.66□□□□□ -1.34
ATG4YNL223W CDC15P27636 974 aa6.65□□□□□ -1.35
ATG4YNL223W HIR1P32479 840 aa6.65□□□□□ -1.35
ATG4YNL223W SAC6P32599 642 aaKnown RBP6.65□□□□□ -1.35
ATG4YNL223W NDT80P38830 627 aa6.65□□□□□ -1.35
ATG4YNL223W PEA2P40091 420 aa6.65□□□□□ -1.35
ATG4YNL223W YMR1P47147 688 aaKnown RBP RIP-Chip data6.65□□□□□ -1.35not detected
ATG4YNL223W CSM3Q04659 317 aa6.65□□□□□ -1.35
ATG4YNL223W PUS5Q06244 254 aa6.65□□□□□ -1.35
ATG4YNL223W TUF1P02992 437 aaKnown RBP6.64□□□□□ -1.35
ATG4YNL223W SES1P07284 462 aaKnown RBP6.64□□□□□ -1.35
ATG4YNL223W PSY4P38193 441 aa6.64□□□□□ -1.35
ATG4YNL223W PAN5P38787 379 aa6.64□□□□□ -1.35
ATG4YNL223W THI6P41835 540 aa6.64□□□□□ -1.35
ATG4YNL223W UBA2P52488 636 aa6.64□□□□□ -1.35
ATG4YNL223W SDA1P53313 767 aaKnown RBP6.64□□□□□ -1.35
ATG4YNL223W WAR1Q03631 944 aa6.64□□□□□ -1.35
ATG4YNL223W PSR2Q07949 397 aa6.64□□□□□ -1.35
ATG4YNL223W YBL029C-AQ3E756 94 aa6.64□□□□□ -1.35
ATG4YNL223W FOB1O13329 566 aa6.63□□□□□ -1.35
ATG4YNL223W SRO9P25567 434 aaKnown RBP6.63□□□□□ -1.35
ATG4YNL223W PWP2P25635 923 aaKnown RBP6.63□□□□□ -1.35
ATG4YNL223W TFG2P41896 400 aaPredicted RBP6.63□□□□□ -1.35
ATG4YNL223W FMS1P50264 508 aa6.63□□□□□ -1.35
ATG4YNL223W YGR273CP53329 174 aa6.63□□□□□ -1.35
Retrieved 100 of 5,963 RNA–protein pairs in 12.6 ms