RNA–Protein interactions for RNA: YLR058C

SHM2, Transcript of Cytosolic serine hydroxymethyltransferase, yeast

Gene SHM2, Length 1,410 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHM2	YLR058C	NDT80	P38830	627 aa		11.84	□□□□□ -0.51
SHM2	YLR058C	SMD2	Q06217	110 aa	Known RBP	11.84	□□□□□ -0.51
SHM2	YLR058C	KEX1	P09620	729 aa		11.83	□□□□□ -0.52
SHM2	YLR058C	ELM1	P32801	640 aa		11.83	□□□□□ -0.52
SHM2	YLR058C	MCD4	P36051	919 aa		11.83	□□□□□ -0.52
SHM2	YLR058C	FAR11	P53917	953 aa		11.83	□□□□□ -0.52
SHM2	YLR058C	RBA50	Q04418	439 aa		11.83	□□□□□ -0.52
SHM2	YLR058C	COG8	Q04632	607 aa		11.83	□□□□□ -0.52
SHM2	YLR058C	HXK1	P04806	485 aa	Known RBP	11.82	□□□□□ -0.52
SHM2	YLR058C	FRS2	P15625	503 aa	Known RBP	11.82	□□□□□ -0.52
SHM2	YLR058C	ROX1	P25042	368 aa		11.82	□□□□□ -0.52
SHM2	YLR058C	FMS1	P50264	508 aa		11.82	□□□□□ -0.52
SHM2	YLR058C	RET3	P53600	189 aa		11.82	□□□□□ -0.52
SHM2	YLR058C	TMA64	Q04600	565 aa	Known RBP	11.82	□□□□□ -0.52
SHM2	YLR058C	CST9	Q06032	482 aa		11.82	□□□□□ -0.52
SHM2	YLR058C	CSC1	Q06538	782 aa		11.82	□□□□□ -0.52
SHM2	YLR058C	RGP1	P16664	663 aa		11.81	□□□□□ -0.52
SHM2	YLR058C	ALD6	P54115	500 aa	Known RBP	11.81	□□□□□ -0.52
SHM2	YLR058C	JIP4	Q03361	876 aa		11.81	□□□□□ -0.52
SHM2	YLR058C	CFT2	Q12102	859 aa	Predicted RBP	11.81	□□□□□ -0.52
SHM2	YLR058C	PTC5	Q12511	572 aa		11.81	□□□□□ -0.52
SHM2	YLR058C	NBL1	Q3E7Y6	73 aa		11.81	□□□□□ -0.52
SHM2	YLR058C	SAM1	P10659	382 aa	Known RBP	11.8	□□□□□ -0.52
SHM2	YLR058C	PWP2	P25635	923 aa	Known RBP	11.8	□□□□□ -0.52
SHM2	YLR058C	IXR1	P33417	597 aa		11.8	□□□□□ -0.52
SHM2	YLR058C	TGL1	P34163	548 aa		11.8	□□□□□ -0.52
SHM2	YLR058C	SAS3	P34218	831 aa		11.8	□□□□□ -0.52
SHM2	YLR058C	PAN5	P38787	379 aa		11.8	□□□□□ -0.52
SHM2	YLR058C	SNF7	P39929	240 aa	Known RBP	11.8	□□□□□ -0.52
SHM2	YLR058C	CCT5	P40413	562 aa	Known RBP	11.8	□□□□□ -0.52
SHM2	YLR058C	BNI5	P53890	448 aa	Known RBP	11.8	□□□□□ -0.52
SHM2	YLR058C	EIS1	Q05050	843 aa	Known RBP	11.8	□□□□□ -0.52
SHM2	YLR058C	APC11	Q12157	165 aa		11.8	□□□□□ -0.52
SHM2	YLR058C	TIP41	Q12199	356 aa		11.8	□□□□□ -0.52
SHM2	YLR058C	PHR1	P05066	565 aa	Known RBP RIP-Chip data	11.79	□□□□□ -0.52	not detected
SHM2	YLR058C	THR4	P16120	514 aa	Known RBP	11.79	□□□□□ -0.52
SHM2	YLR058C	URA1	P28272	314 aa	Predicted RBP	11.79	□□□□□ -0.52
SHM2	YLR058C	APE3	P37302	537 aa	Known RBP	11.79	□□□□□ -0.52
SHM2	YLR058C	TRS120	Q04183	1289 aa		11.79	□□□□□ -0.52
SHM2	YLR058C	YOR296W	Q08748	1289 aa		11.79	□□□□□ -0.52
SHM2	YLR058C	AIM44	Q99299	758 aa		11.79	□□□□□ -0.52
SHM2	YLR058C	ASH1	P34233	588 aa		11.78	□□□□□ -0.52
SHM2	YLR058C	RFT1	P38206	574 aa	Predicted RBP	11.78	□□□□□ -0.52
SHM2	YLR058C	SUL1	P38359	859 aa		11.78	□□□□□ -0.52
SHM2	YLR058C	STT3	P39007	718 aa	Known RBP	11.78	□□□□□ -0.52
SHM2	YLR058C	CIT3	P43635	486 aa		11.78	□□□□□ -0.52
SHM2	YLR058C	DSE4	P53753	1117 aa		11.78	□□□□□ -0.52
SHM2	YLR058C	SPH1	Q06160	661 aa		11.78	□□□□□ -0.52
SHM2	YLR058C	OXR1	Q08952	273 aa		11.78	□□□□□ -0.52
SHM2	YLR058C	VMA2	P16140	517 aa	Known RBP	11.77	□□□□□ -0.52
SHM2	YLR058C	ALG1	P16661	449 aa		11.77	□□□□□ -0.52
SHM2	YLR058C	UTR4	P32626	227 aa		11.77	□□□□□ -0.52
SHM2	YLR058C	UGA4	P32837	571 aa		11.77	□□□□□ -0.52
SHM2	YLR058C	MOT2	P34909	587 aa	Known RBP	11.77	□□□□□ -0.52
SHM2	YLR058C	ARL1	P38116	183 aa	Known RBP	11.77	□□□□□ -0.52
SHM2	YLR058C	RVS167	P39743	482 aa	Known RBP	11.77	□□□□□ -0.52
SHM2	YLR058C	SLK19	Q08581	821 aa	Known RBP	11.77	□□□□□ -0.52
SHM2	YLR058C	DDP1	Q99321	188 aa	Known RBP	11.77	□□□□□ -0.52
SHM2	YLR058C	ERG7	P38604	731 aa		11.77	□□□□□ -0.53
SHM2	YLR058C	RSM25	P40496	264 aa		11.77	□□□□□ -0.53
SHM2	YLR058C	LIF1	P53150	421 aa		11.77	□□□□□ -0.53
SHM2	YLR058C	YGR273C	P53329	174 aa		11.77	□□□□□ -0.53
SHM2	YLR058C	CSM3	Q04659	317 aa		11.77	□□□□□ -0.53
SHM2	YLR058C	MCM3	P24279	971 aa	Known RBP	11.76	□□□□□ -0.53
SHM2	YLR058C	SRO9	P25567	434 aa	Known RBP	11.76	□□□□□ -0.53
SHM2	YLR058C	CDC60	P26637	1090 aa	Known RBP	11.76	□□□□□ -0.53
SHM2	YLR058C	MCM4	P30665	933 aa	Known RBP	11.76	□□□□□ -0.53
SHM2	YLR058C	DID4	P36108	232 aa		11.76	□□□□□ -0.53
SHM2	YLR058C	YKR018C	P36114	725 aa		11.76	□□□□□ -0.53
SHM2	YLR058C	RSC30	P38781	883 aa		11.76	□□□□□ -0.53
SHM2	YLR058C	GPB2	P39717	880 aa		11.76	□□□□□ -0.53
SHM2	YLR058C	RTC4	P53850	401 aa		11.76	□□□□□ -0.53
SHM2	YLR058C	KRE33	P53914	1056 aa	Known RBP	11.76	□□□□□ -0.53
SHM2	YLR058C	AIM33	Q04516	312 aa		11.76	□□□□□ -0.53
SHM2	YLR058C	GUD1	Q07729	489 aa		11.76	□□□□□ -0.53
SHM2	YLR058C	PKC1	P24583	1151 aa		11.75	□□□□□ -0.53
SHM2	YLR058C	EUG1	P32474	517 aa		11.75	□□□□□ -0.53
SHM2	YLR058C	SHP1	P34223	423 aa		11.75	□□□□□ -0.53
SHM2	YLR058C	ATG32	P40458	529 aa		11.75	□□□□□ -0.53
SHM2	YLR058C	SPR3	P41901	512 aa		11.75	□□□□□ -0.53
SHM2	YLR058C	CUE3	P53137	624 aa	Known RBP	11.75	□□□□□ -0.53
SHM2	YLR058C	DUS3	Q06053	668 aa	Known RBP	11.75	□□□□□ -0.53
SHM2	YLR058C	YLR326W	Q06170	240 aa	Known RBP	11.75	□□□□□ -0.53
SHM2	YLR058C	MMR1	Q06324	491 aa		11.75	□□□□□ -0.53
SHM2	YLR058C	RKM4	Q12504	494 aa		11.75	□□□□□ -0.53
SHM2	YLR058C	TIF6	Q12522	245 aa	Known RBP	11.75	□□□□□ -0.53
SHM2	YLR058C	RPN12	P32496	274 aa		11.74	□□□□□ -0.53
SHM2	YLR058C	ORC6	P38826	435 aa		11.74	□□□□□ -0.53
SHM2	YLR058C	GAA1	P39012	614 aa		11.74	□□□□□ -0.53
SHM2	YLR058C	YGR153W	P48238	217 aa		11.74	□□□□□ -0.53
SHM2	YLR058C	ARP6	Q12509	438 aa		11.74	□□□□□ -0.53
SHM2	YLR058C	TUF1	P02992	437 aa	Known RBP	11.73	□□□□□ -0.53
SHM2	YLR058C	MCR1	P36060	302 aa	Known RBP	11.73	□□□□□ -0.53
SHM2	YLR058C	SDA1	P53313	767 aa	Known RBP	11.73	□□□□□ -0.53
SHM2	YLR058C	YAF9	P53930	226 aa		11.73	□□□□□ -0.53
SHM2	YLR058C	OYE2	Q03558	400 aa	Known RBP	11.73	□□□□□ -0.53
SHM2	YLR058C	ETT1	Q08421	412 aa	Known RBP	11.73	□□□□□ -0.53
SHM2	YLR058C	GPA1	P08539	472 aa		11.72	□□□□□ -0.53
SHM2	YLR058C	YER130C	P39959	443 aa		11.72	□□□□□ -0.53
SHM2	YLR058C	DAK2	P43550	591 aa		11.72	□□□□□ -0.53

Retrieved 100 of 5,963 RNA–protein pairs in 65.7 ms