RNA–Protein interactions for RNA: YJR044C

VPS55, Transcript of Late endosomal protein involved in late endosome to vacuole transport, yeast

Gene VPS55, Length 423 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS55	YJR044C	SUB2	Q07478	446 aa	Known RBP	3.17	□□□□□ -1.9
VPS55	YJR044C	RVS167	P39743	482 aa	Known RBP	3.16	□□□□□ -1.9
VPS55	YJR044C	XKS1	P42826	600 aa		3.16	□□□□□ -1.9
VPS55	YJR044C	MTR4	P47047	1073 aa	Known RBP	3.16	□□□□□ -1.9
VPS55	YJR044C	UTP5	Q04177	643 aa	Known RBP	3.16	□□□□□ -1.9
VPS55	YJR044C	MPT5	P39016	859 aa	Known RBP RIP-Chip data	3.15	□□□□□ -1.91	not detected
VPS55	YJR044C	GPI13	Q07830	1017 aa		3.15	□□□□□ -1.91
VPS55	YJR044C	SPS1	P08458	490 aa		3.14	□□□□□ -1.91
VPS55	YJR044C	SHU2	P38957	223 aa		3.14	□□□□□ -1.91
VPS55	YJR044C	TAT2	P38967	592 aa		3.14	□□□□□ -1.91
VPS55	YJR044C	ACF4	P47129	309 aa		3.14	□□□□□ -1.91
VPS55	YJR044C	PEX13	P80667	386 aa		3.14	□□□□□ -1.91
VPS55	YJR044C	RCL1	Q08096	367 aa	Predicted RBP	3.14	□□□□□ -1.91
VPS55	YJR044C	HRK1	Q08732	759 aa	Known RBP	3.14	□□□□□ -1.91
VPS55	YJR044C	FRT1	Q99332	602 aa		3.14	□□□□□ -1.91
VPS55	YJR044C	MSH3	P25336	1018 aa		3.13	□□□□□ -1.91
VPS55	YJR044C	UGA4	P32837	571 aa		3.13	□□□□□ -1.91
VPS55	YJR044C	GRS1	P38088	690 aa	Known RBP	3.13	□□□□□ -1.91
VPS55	YJR044C	HSE1	P38753	452 aa		3.13	□□□□□ -1.91
VPS55	YJR044C	LAM1	P38851	1228 aa		3.13	□□□□□ -1.91
VPS55	YJR044C	GCN5	Q03330	439 aa		3.13	□□□□□ -1.91
VPS55	YJR044C	ROT1	Q03691	256 aa		3.13	□□□□□ -1.91
VPS55	YJR044C	SGD1	Q06132	899 aa		3.13	□□□□□ -1.91
VPS55	YJR044C	NOC3	Q07896	663 aa	Predicted RBP	3.13	□□□□□ -1.91
VPS55	YJR044C	RSC58	Q07979	502 aa		3.13	□□□□□ -1.91
VPS55	YJR044C	YOR352W	Q08816	343 aa		3.13	□□□□□ -1.91
VPS55	YJR044C	SRO9	P25567	434 aa	Known RBP	3.12	□□□□□ -1.91
VPS55	YJR044C	QNS1	P38795	714 aa	Known RBP	3.12	□□□□□ -1.91
VPS55	YJR044C	MEF2	P39677	819 aa		3.12	□□□□□ -1.91
VPS55	YJR044C	SLI1	P53304	468 aa		3.12	□□□□□ -1.91
VPS55	YJR044C	RPL34A	P87262	121 aa	Predicted RBP	3.12	□□□□□ -1.91
VPS55	YJR044C	NOG1	Q02892	647 aa	Known RBP	3.12	□□□□□ -1.91
VPS55	YJR044C	LAP2	Q10740	671 aa		3.12	□□□□□ -1.91
VPS55	YJR044C	CYC1	P00044	109 aa	Predicted RBP	3.11	□□□□□ -1.91
VPS55	YJR044C	TRL1	P09880	827 aa	Known RBP	3.11	□□□□□ -1.91
VPS55	YJR044C	YSC84	P32793	468 aa		3.11	□□□□□ -1.91
VPS55	YJR044C	PLB2	Q03674	706 aa		3.11	□□□□□ -1.91
VPS55	YJR044C	PUS9	Q12069	462 aa		3.11	□□□□□ -1.91
VPS55	YJR044C	SPO21	Q12411	609 aa		3.11	□□□□□ -1.91
VPS55	YJR044C	YPT53	P36019	220 aa		3.1	□□□□□ -1.91
VPS55	YJR044C	ATG14	P38270	344 aa		3.1	□□□□□ -1.91
VPS55	YJR044C	GPB2	P39717	880 aa		3.1	□□□□□ -1.91
VPS55	YJR044C	YCS4	Q06156	1176 aa		3.1	□□□□□ -1.91
VPS55	YJR044C	TRM2	P33753	639 aa		3.09	□□□□□ -1.91
VPS55	YJR044C	MDJ2	P42834	146 aa		3.09	□□□□□ -1.91
VPS55	YJR044C	RSM26	P47141	266 aa		3.09	□□□□□ -1.91
VPS55	YJR044C	MSE1	P48525	536 aa		3.09	□□□□□ -1.91
VPS55	YJR044C	SUN4	P53616	420 aa		3.09	□□□□□ -1.91
VPS55	YJR044C	TMA10	Q06177	86 aa		3.09	□□□□□ -1.91
VPS55	YJR044C	NUT2	Q06213	157 aa		3.09	□□□□□ -1.91
VPS55	YJR044C	NBA1	Q08229	501 aa	Known RBP	3.09	□□□□□ -1.91
VPS55	YJR044C	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	3.08	□□□□□ -1.92	not detected
VPS55	YJR044C	ERP5	P38819	212 aa		3.08	□□□□□ -1.92
VPS55	YJR044C	DUS4	Q06063	367 aa		3.08	□□□□□ -1.92
VPS55	YJR044C	COQ4	O13525	335 aa		3.07	□□□□□ -1.92
VPS55	YJR044C	GAL10	P04397	699 aa		3.07	□□□□□ -1.92
VPS55	YJR044C	HEM13	P11353	328 aa	Known RBP	3.07	□□□□□ -1.92
VPS55	YJR044C	HCM1	P25364	564 aa		3.07	□□□□□ -1.92
VPS55	YJR044C	KIP1	P28742	1111 aa		3.07	□□□□□ -1.92
VPS55	YJR044C	PRP40	P33203	583 aa	Known RBP	3.07	□□□□□ -1.92
VPS55	YJR044C	PEX28	P38848	579 aa		3.07	□□□□□ -1.92
VPS55	YJR044C	SAM37	P50110	327 aa		3.07	□□□□□ -1.92
VPS55	YJR044C	CMP2	P14747	604 aa		3.06	□□□□□ -1.92
VPS55	YJR044C	VMA4	P22203	233 aa	Known RBP	3.06	□□□□□ -1.92
VPS55	YJR044C	PUF4	P25339	888 aa	Known RBP RIP-Chip data	3.06	□□□□□ -1.92	not detected
VPS55	YJR044C	AFG2	P32794	780 aa		3.06	□□□□□ -1.92
VPS55	YJR044C	LST4	P34239	828 aa		3.06	□□□□□ -1.92
VPS55	YJR044C	SQT1	P35184	431 aa		3.06	□□□□□ -1.92
VPS55	YJR044C	ADD66	P36040	267 aa		3.06	□□□□□ -1.92
VPS55	YJR044C	CIC1	P38779	376 aa	Known RBP	3.06	□□□□□ -1.92
VPS55	YJR044C	SEC26	P41810	973 aa	Known RBP	3.06	□□□□□ -1.92
VPS55	YJR044C	MCM6	P53091	1017 aa	Known RBP	3.06	□□□□□ -1.92
VPS55	YJR044C	ULP1	Q02724	621 aa		3.06	□□□□□ -1.92
VPS55	YJR044C	DAL4	Q04895	635 aa		3.06	□□□□□ -1.92
VPS55	YJR044C	RSB1	Q08417	382 aa		3.06	□□□□□ -1.92
VPS55	YJR044C	SRM1	P21827	482 aa		3.05	□□□□□ -1.92
VPS55	YJR044C	CDC20	P26309	610 aa		3.05	□□□□□ -1.92
VPS55	YJR044C	RDH54	P38086	958 aa		3.05	□□□□□ -1.92
VPS55	YJR044C	CCZ1	P38273	704 aa		3.05	□□□□□ -1.92
VPS55	YJR044C	YFL054C	P43549	646 aa		3.05	□□□□□ -1.92
VPS55	YJR044C	VPS53	P47061	822 aa		3.05	□□□□□ -1.92
VPS55	YJR044C	PHO23	P50947	330 aa		3.05	□□□□□ -1.92
VPS55	YJR044C	ENV11	P53246	860 aa		3.05	□□□□□ -1.92
VPS55	YJR044C	TOS4	Q06266	489 aa		3.05	□□□□□ -1.92
VPS55	YJR044C	YBL113C	Q7M4S9	792 aa		3.05	□□□□□ -1.92
VPS55	YJR044C	DED1	P06634	604 aa	Known RBP	3.04	□□□□□ -1.92
VPS55	YJR044C	HNT2	P49775	206 aa		3.04	□□□□□ -1.92
VPS55	YJR044C	YGL140C	P53120	1219 aa		3.04	□□□□□ -1.92
VPS55	YJR044C	TNA1	P53322	534 aa		3.04	□□□□□ -1.92
VPS55	YJR044C	HOS3	Q02959	697 aa	Known RBP	3.04	□□□□□ -1.92
VPS55	YJR044C	YML122C	Q03207	126 aa		3.04	□□□□□ -1.92
VPS55	YJR044C	ACK1	Q07622	623 aa	Predicted RBP	3.04	□□□□□ -1.92
VPS55	YJR044C	NTO1	Q12311	748 aa		3.04	□□□□□ -1.92
VPS55	YJR044C	SNF5	P18480	905 aa		3.03	□□□□□ -1.92
VPS55	YJR044C	DOM34	P33309	386 aa		3.03	□□□□□ -1.92
VPS55	YJR044C	BAP2	P38084	609 aa		3.03	□□□□□ -1.92
VPS55	YJR044C	AIM21	P40563	679 aa		3.03	□□□□□ -1.92
VPS55	YJR044C	GTF1	P53260	183 aa	Predicted RBP	3.03	□□□□□ -1.92
VPS55	YJR044C	RKM2	Q03942	479 aa		3.03	□□□□□ -1.92
VPS55	YJR044C	EST2	Q06163	884 aa		3.03	□□□□□ -1.92

Retrieved 100 of 5,963 RNA–protein pairs in 397.7 ms