RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP42YDR235W RSC58Q07979 502 aa2.74□□□□□ -1.97
PRP42YDR235W NBA1Q08229 501 aaKnown RBP2.74□□□□□ -1.97
PRP42YDR235W HRK1Q08732 759 aaKnown RBP2.74□□□□□ -1.97
PRP42YDR235W CYC1P00044 109 aaPredicted RBP2.73□□□□□ -1.97
PRP42YDR235W DOM34P33309 386 aa2.73□□□□□ -1.97
PRP42YDR235W CHS7P38843 316 aa2.73□□□□□ -1.97
PRP42YDR235W MNN10P50108 393 aaKnown RBP2.73□□□□□ -1.97
PRP42YDR235W YAF9P53930 226 aa2.73□□□□□ -1.97
PRP42YDR235W DUS4Q06063 367 aa2.73□□□□□ -1.97
PRP42YDR235W PMT7Q06644 662 aa2.73□□□□□ -1.97
PRP42YDR235W STE11P23561 717 aa2.72□□□□□ -1.97
PRP42YDR235W HSE1P38753 452 aa2.72□□□□□ -1.97
PRP42YDR235W MCM5P29496 775 aaKnown RBP2.71□□□□□ -1.97
PRP42YDR235W NEM1P38757 446 aa2.71□□□□□ -1.97
PRP42YDR235W NUT1P53114 1132 aa2.71□□□□□ -1.97
PRP42YDR235W YML083CQ04526 418 aa2.71□□□□□ -1.97
PRP42YDR235W RSA3Q05942 220 aaKnown RBP2.71□□□□□ -1.97
PRP42YDR235W TMA10Q06177 86 aa2.71□□□□□ -1.97
PRP42YDR235W EXO5P38289 585 aa2.71□□□□□ -1.98
PRP42YDR235W YJL045WP47052 634 aa2.71□□□□□ -1.98
PRP42YDR235W PHO23P50947 330 aa2.71□□□□□ -1.98
PRP42YDR235W PLB2Q03674 706 aa2.71□□□□□ -1.98
PRP42YDR235W FLP1P03870 423 aa2.7□□□□□ -1.98
PRP42YDR235W CDC20P26309 610 aa2.7□□□□□ -1.98
PRP42YDR235W LST4P34239 828 aa2.7□□□□□ -1.98
PRP42YDR235W UFD2P54860 961 aa2.7□□□□□ -1.98
PRP42YDR235W RXT3Q07458 294 aa2.7□□□□□ -1.98
PRP42YDR235W LAP2Q10740 671 aa2.7□□□□□ -1.98
PRP42YDR235W SHU2P38957 223 aa2.69□□□□□ -1.98
PRP42YDR235W BOL3P39724 118 aa2.69□□□□□ -1.98
PRP42YDR235W MTR4P47047 1073 aaKnown RBP2.69□□□□□ -1.98
PRP42YDR235W ACK1Q07622 623 aaPredicted RBP2.69□□□□□ -1.98
PRP42YDR235W PPM2Q08282 695 aa2.69□□□□□ -1.98
PRP42YDR235W YSC84P32793 468 aa2.68□□□□□ -1.98
PRP42YDR235W RVS167P39743 482 aaKnown RBP2.68□□□□□ -1.98
PRP42YDR235W SEC26P41810 973 aaKnown RBP2.68□□□□□ -1.98
PRP42YDR235W BDF2Q07442 638 aa2.68□□□□□ -1.98
PRP42YDR235W KIN4Q01919 800 aa2.68□□□□□ -1.98
PRP42YDR235W UTP5Q04177 643 aaKnown RBP2.68□□□□□ -1.98
PRP42YDR235W BSC2Q05611 235 aa2.68□□□□□ -1.98
PRP42YDR235W PMA1P05030 918 aaKnown RBP2.67□□□□□ -1.98
PRP42YDR235W ATG14P38270 344 aa2.67□□□□□ -1.98
PRP42YDR235W QNS1P38795 714 aaKnown RBP2.67□□□□□ -1.98
PRP42YDR235W YNL011CP53980 444 aa2.67□□□□□ -1.98
PRP42YDR235W GPB1Q08886 897 aa2.67□□□□□ -1.98
PRP42YDR235W COQ4O13525 335 aa2.66□□□□□ -1.98
PRP42YDR235W DEF1P35732 738 aaKnown RBP2.66□□□□□ -1.98
PRP42YDR235W MSS4P38994 779 aa2.66□□□□□ -1.98
PRP42YDR235W XKS1P42826 600 aa2.66□□□□□ -1.98
PRP42YDR235W MON1P53129 644 aa2.66□□□□□ -1.98
PRP42YDR235W RCL1Q08096 367 aaPredicted RBP2.66□□□□□ -1.98
PRP42YDR235W NOB1Q08444 459 aaKnown RBP2.66□□□□□ -1.98
PRP42YDR235W OAR1P35731 278 aa2.65□□□□□ -1.98
PRP42YDR235W CCZ1P38273 704 aa2.65□□□□□ -1.98
PRP42YDR235W UBA2P52488 636 aa2.65□□□□□ -1.98
PRP42YDR235W PBP1P53297 722 aaKnown RBP2.65□□□□□ -1.98
PRP42YDR235W YNR063WP53749 607 aa2.65□□□□□ -1.98
PRP42YDR235W RSB1Q08417 382 aa2.65□□□□□ -1.98
PRP42YDR235W GAL10P04397 699 aa2.64□□□□□ -1.99
PRP42YDR235W CMP2P14747 604 aa2.64□□□□□ -1.99
PRP42YDR235W RSM24Q03976 319 aa2.64□□□□□ -1.99
PRP42YDR235W MOH1P38191 138 aa2.64□□□□□ -1.99
PRP42YDR235W GLO3P38682 493 aaKnown RBP2.64□□□□□ -1.99
PRP42YDR235W ATF1P40353 525 aa2.64□□□□□ -1.99
PRP42YDR235W INP54Q08227 384 aaKnown RBP2.64□□□□□ -1.99
PRP42YDR235W SPO21Q12411 609 aa2.64□□□□□ -1.99
PRP42YDR235W RQC2Q12532 1038 aaKnown RBP2.64□□□□□ -1.99
PRP42YDR235W CDC6P09119 513 aa2.63□□□□□ -1.99
PRP42YDR235W DCG1P32460 244 aa2.63□□□□□ -1.99
PRP42YDR235W CDC55Q00362 526 aa2.63□□□□□ -1.99
PRP42YDR235W NOG1Q02892 647 aaKnown RBP2.63□□□□□ -1.99
PRP42YDR235W YLR224WQ05947 369 aa2.63□□□□□ -1.99
PRP42YDR235W SRM1P21827 482 aa2.62□□□□□ -1.99
PRP42YDR235W BAP2P38084 609 aa2.62□□□□□ -1.99
PRP42YDR235W QDR1P40475 563 aa2.62□□□□□ -1.99
PRP42YDR235W VPS53P47061 822 aa2.62□□□□□ -1.99
PRP42YDR235W LGE1Q02796 332 aaKnown RBP2.62□□□□□ -1.99
PRP42YDR235W YAP6Q03935 383 aa2.62□□□□□ -1.99
PRP42YDR235W SSA4P22202 642 aaKnown RBP2.61□□□□□ -1.99
PRP42YDR235W MSH3P25336 1018 aa2.61□□□□□ -1.99
PRP42YDR235W PIK1P39104 1066 aa2.61□□□□□ -1.99
PRP42YDR235W VPS62P53285 467 aa2.61□□□□□ -1.99
PRP42YDR235W HOS3Q02959 697 aaKnown RBP2.61□□□□□ -1.99
PRP42YDR235W TNA1P53322 534 aa2.6□□□□□ -1.99
PRP42YDR235W MNL2Q12205 849 aa2.6□□□□□ -1.99
PRP42YDR235W VMA4P22203 233 aaKnown RBP2.6□□□□□ -1.99
PRP42YDR235W KIP1P28742 1111 aa2.6□□□□□ -1.99
PRP42YDR235W RFC5P38251 354 aa2.6□□□□□ -1.99
PRP42YDR235W GTF1P53260 183 aaPredicted RBP2.6□□□□□ -1.99
PRP42YDR235W PEX13P80667 386 aa2.6□□□□□ -1.99
PRP42YDR235W TRS120Q04183 1289 aa2.6□□□□□ -1.99
PRP42YDR235W EMC1P25574 760 aa2.59□□□□□ -1.99
PRP42YDR235W GPB2P39717 880 aa2.59□□□□□ -1.99
PRP42YDR235W VTS1Q08831 523 aaKnown RBP RIP-Chip data2.59□□□□□ -1.99not detected
PRP42YDR235W CUE2P36075 443 aaKnown RBP2.58□□□□□ -2
PRP42YDR235W RKM2Q03942 479 aa2.58□□□□□ -2
PRP42YDR235W SCP160P06105 1222 aaKnown RBP RIP-Chip data2.57□□□□□ -2not detected
PRP42YDR235W KIN2P13186 1147 aaKnown RBP2.57□□□□□ -2
PRP42YDR235W ADD66P36040 267 aa2.57□□□□□ -2
PRP42YDR235W STU2P46675 888 aa2.57□□□□□ -2
Retrieved 100 of 5,963 RNA–protein pairs in 24.5 ms