RNA–Protein interactions for RNA: ENST00000536107.5

YBX3-205, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-205ENST00000536107 TSC1Q92574 1164 aa7.92□□□□□ -1.14
YBX3-205ENST00000536107 ZNF608Q9ULD9 1512 aaPredicted RBP7.92□□□□□ -1.14
YBX3-205ENST00000536107 SOCS7O14512 581 aa7.91□□□□□ -1.14
YBX3-205ENST00000536107 FOXD4L5Q5VV16 416 aaPredicted RBP7.91□□□□□ -1.14
YBX3-205ENST00000536107 ZNF395Q9H8N7 513 aaPredicted RBP7.91□□□□□ -1.14
YBX3-205ENST00000536107 FOXR1Q6PIV2 292 aa7.9□□□□□ -1.14
YBX3-205ENST00000536107 ACDQ96AP0 544 aa7.9□□□□□ -1.14
YBX3-205ENST00000536107 ZNF837Q96EG3 531 aaPredicted RBP7.9□□□□□ -1.14
YBX3-205ENST00000536107 SLC10A4Q96EP9 437 aa7.9□□□□□ -1.14
YBX3-205ENST00000536107 CSPP1Q1MSJ5 1256 aa7.89□□□□□ -1.15
YBX3-205ENST00000536107 TUSC1Q2TAM9 212 aa7.89□□□□□ -1.15
YBX3-205ENST00000536107 INTS6LQ5JSJ4 861 aaKnown RBP7.89□□□□□ -1.15
YBX3-205ENST00000536107 PDXDC2PQ6P474 469 aa7.89□□□□□ -1.15
YBX3-205ENST00000536107 LYSMD3Q7Z3D4 306 aa7.89□□□□□ -1.15
YBX3-205ENST00000536107 TRIM22Q8IYM9 498 aa7.89□□□□□ -1.15
YBX3-205ENST00000536107 HELBQ8NG08 1087 aaPredicted RBP7.89□□□□□ -1.15
YBX3-205ENST00000536107 KRBA1A5PL33 1030 aa7.88□□□□□ -1.15
YBX3-205ENST00000536107 NUTM2BA6NNL0 878 aaPredicted RBP7.88□□□□□ -1.15
YBX3-205ENST00000536107 NUTM2EB1AL46 878 aaPredicted RBP7.88□□□□□ -1.15
YBX3-205ENST00000536107 NUTM2DQ5VT03 806 aaPredicted RBP7.88□□□□□ -1.15
YBX3-205ENST00000536107 ALYREFQ86V81 257 aaKnown RBP7.88□□□□□ -1.15
YBX3-205ENST00000536107 NUTM2AQ8IVF1 878 aaPredicted RBP7.88□□□□□ -1.15
YBX3-205ENST00000536107 ARHGAP9Q9BRR9 750 aa7.88□□□□□ -1.15
YBX3-205ENST00000536107 URB2Q14146 1524 aaKnown RBP7.88□□□□□ -1.15
YBX3-205ENST00000536107 LILRB3O75022 631 aa7.87□□□□□ -1.15
YBX3-205ENST00000536107 ADH1AP07327 375 aa7.87□□□□□ -1.15
YBX3-205ENST00000536107 QPCTQ16769 361 aa7.87□□□□□ -1.15
YBX3-205ENST00000536107 IFT140Q96RY7 1462 aa7.87□□□□□ -1.15
YBX3-205ENST00000536107 GPR25O00155 361 aa7.86□□□□□ -1.15
YBX3-205ENST00000536107 FURINP09958 794 aa7.86□□□□□ -1.15
YBX3-205ENST00000536107 PTGIRP43119 386 aa7.86□□□□□ -1.15
YBX3-205ENST00000536107 KRTAP1-3Q8IUG1 177 aa7.86□□□□□ -1.15
YBX3-205ENST00000536107 OIP5O43482 229 aa7.85□□□□□ -1.15
YBX3-205ENST00000536107 BARGINQ6ZT62 677 aa7.85□□□□□ -1.15
YBX3-205ENST00000536107 KDF1Q8NAX2 398 aaPredicted RBP7.85□□□□□ -1.15
YBX3-205ENST00000536107 LIMD1Q9UGP4 676 aa7.85□□□□□ -1.15
YBX3-205ENST00000536107 PLCB2Q00722 1185 aa7.84□□□□□ -1.15
YBX3-205ENST00000536107 DBN1Q16643 649 aa7.84□□□□□ -1.15
YBX3-205ENST00000536107 ZBTB33Q86T24 672 aa7.84□□□□□ -1.15
YBX3-205ENST00000536107 LILRA1O75019 489 aa7.83□□□□□ -1.16
YBX3-205ENST00000536107 RNF144AP50876 292 aaPredicted RBP7.83□□□□□ -1.16
YBX3-205ENST00000536107 PARP9Q8IXQ6 854 aa7.83□□□□□ -1.16
YBX3-205ENST00000536107 ZNF784Q8NCA9 323 aaPredicted RBP7.83□□□□□ -1.16
YBX3-205ENST00000536107 TMPRSS4Q9NRS4 437 aa7.83□□□□□ -1.16
YBX3-205ENST00000536107 NSFL1CQ9UNZ2 370 aaKnown RBP7.83□□□□□ -1.16
YBX3-205ENST00000536107 KDM2AQ9Y2K7 1162 aa7.83□□□□□ -1.16
YBX3-205ENST00000536107 H7C1W4 665 aa7.82□□□□□ -1.16
YBX3-205ENST00000536107 ADD1P35611 737 aaKnown RBP7.82□□□□□ -1.16
YBX3-205ENST00000536107 SNRPNP63162 240 aaKnown RBP7.82□□□□□ -1.16
YBX3-205ENST00000536107 ILDR2Q71H61 639 aa7.82□□□□□ -1.16
YBX3-205ENST00000536107 PRICKLE2Q7Z3G6 844 aa7.82□□□□□ -1.16
YBX3-205ENST00000536107 CHMP7Q8WUX9 453 aaPredicted RBP7.82□□□□□ -1.16
YBX3-205ENST00000536107 TRERF1Q96PN7 1200 aa7.82□□□□□ -1.16
YBX3-205ENST00000536107 MKL2Q9ULH7 1088 aa7.82□□□□□ -1.16
YBX3-205ENST00000536107 PEG3Q9GZU2 1588 aa7.81□□□□□ -1.16
YBX3-205ENST00000536107 RHOQP17081 205 aa7.81□□□□□ -1.16
YBX3-205ENST00000536107 MX2P20592 715 aa7.81□□□□□ -1.16
YBX3-205ENST00000536107 MYSM1Q5VVJ2 828 aa7.81□□□□□ -1.16
YBX3-205ENST00000536107 GTPBP3Q969Y2 492 aaKnown RBP7.81□□□□□ -1.16
YBX3-205ENST00000536107 FKBPLQ9UIM3 349 aa7.81□□□□□ -1.16
YBX3-205ENST00000536107 DISP3Q9P2K9 1392 aa7.81□□□□□ -1.16
YBX3-205ENST00000536107 AQRO60306 1485 aaKnown RBP eCLIP7.81□□□□□ -1.162e-6■■■□□ 17.2
YBX3-205ENST00000536107 ZC3H4Q9UPT8 1303 aaKnown RBP7.8□□□□□ -1.16
YBX3-205ENST00000536107 ERCC6L2Q5T890 1561 aa7.8□□□□□ -1.16
YBX3-205ENST00000536107 ZMYND10O75800 440 aa7.8□□□□□ -1.16
YBX3-205ENST00000536107 COL8A1P27658 744 aa7.8□□□□□ -1.16
YBX3-205ENST00000536107 NBPF20Q3BBV1 942 aa7.8□□□□□ -1.16
YBX3-205ENST00000536107 RTL5Q5HYW3 569 aaPredicted RBP7.8□□□□□ -1.16
YBX3-205ENST00000536107 RIPOR1Q6ZS17 1223 aa7.8□□□□□ -1.16
YBX3-205ENST00000536107 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.8□□□□□ -1.16
YBX3-205ENST00000536107 DYRK1BQ9Y463 629 aa7.8□□□□□ -1.16
YBX3-205ENST00000536107 OCSTAMPQ9BR26 566 aa7.79□□□□□ -1.16
YBX3-205ENST00000536107 OXCT2Q9BYC2 517 aaPredicted RBP7.79□□□□□ -1.16
YBX3-205ENST00000536107 GAPVD1Q14C86 1478 aa7.79□□□□□ -1.16
YBX3-205ENST00000536107 CHD1O14646 1710 aa7.78□□□□□ -1.16
YBX3-205ENST00000536107 GPC1P35052 558 aa7.78□□□□□ -1.16
YBX3-205ENST00000536107 FAM69CQ0P6D2 419 aa7.78□□□□□ -1.16
YBX3-205ENST00000536107 GPSM3Q9Y4H4 160 aa7.78□□□□□ -1.16
YBX3-205ENST00000536107 ERVH48-1M5A8F1 160 aa7.77□□□□□ -1.17
YBX3-205ENST00000536107 MAP2K3P46734 347 aa7.77□□□□□ -1.17
YBX3-205ENST00000536107 PTK2Q05397 1052 aa7.77□□□□□ -1.17
YBX3-205ENST00000536107 EIF4G3O43432 1585 aaKnown RBP7.76□□□□□ -1.17
YBX3-205ENST00000536107 CFTRP13569 1480 aa7.76□□□□□ -1.17
YBX3-205ENST00000536107 ADAM32Q8TC27 787 aa7.76□□□□□ -1.17
YBX3-205ENST00000536107 MROH2BQ7Z745 1585 aa7.76□□□□□ -1.17
YBX3-205ENST00000536107 HECW2Q9P2P5 1572 aa7.76□□□□□ -1.17
YBX3-205ENST00000536107 SHISA8B8ZZ34 492 aa7.75□□□□□ -1.17
YBX3-205ENST00000536107 CTDSPL2Q05D32 466 aa7.75□□□□□ -1.17
YBX3-205ENST00000536107 SYNJ2O15056 1496 aa7.75□□□□□ -1.17
YBX3-205ENST00000536107 ITGB7P26010 798 aa7.74□□□□□ -1.17
YBX3-205ENST00000536107 RAB15P59190 212 aa7.74□□□□□ -1.17
YBX3-205ENST00000536107 LCE3BQ5TA77 95 aa7.74□□□□□ -1.17
YBX3-205ENST00000536107 TRIM52Q96A61 297 aa7.74□□□□□ -1.17
YBX3-205ENST00000536107 GAS2L1Q99501 681 aaPredicted RBP7.74□□□□□ -1.17
YBX3-205ENST00000536107 ESPNB1AK53 854 aa7.73□□□□□ -1.17
YBX3-205ENST00000536107 KRTAP4-12Q9BQ66 201 aa7.73□□□□□ -1.17
YBX3-205ENST00000536107 C1QTNF9BB2RNN3 333 aa7.72□□□□□ -1.17
YBX3-205ENST00000536107 TRIM66O15016 1216 aa7.72□□□□□ -1.17
YBX3-205ENST00000536107 GRIN2CQ14957 1233 aa7.72□□□□□ -1.17
YBX3-205ENST00000536107 PPP2R2DQ66LE6 453 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms