RNA–Protein interactions for RNA: ENST00000508871.5

NEDD4-209, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best)

Gene NEDD4, Length 5,707 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-209ENST00000508871 GABBR1Q9UBS5 961 aa4.88□□□□□ -1.63
NEDD4-209ENST00000508871 PREX1Q8TCU6 1659 aa4.87□□□□□ -1.63
NEDD4-209ENST00000508871 KRT18P05783 430 aaKnown RBP4.87□□□□□ -1.63
NEDD4-209ENST00000508871 HDAC1Q13547 482 aaPredicted RBP4.87□□□□□ -1.63
NEDD4-209ENST00000508871 HSCBQ8IWL3 235 aa4.87□□□□□ -1.63
NEDD4-209ENST00000508871 PRDM16Q9HAZ2 1276 aa4.87□□□□□ -1.63
NEDD4-209ENST00000508871 ATG3Q9NT62 314 aa4.87□□□□□ -1.63
NEDD4-209ENST00000508871 DHX29Q7Z478 1369 aaKnown RBP4.87□□□□□ -1.63
NEDD4-209ENST00000508871 ADGRB3O60242 1522 aa4.87□□□□□ -1.63
NEDD4-209ENST00000508871 A2MP01023 1474 aa4.87□□□□□ -1.63
NEDD4-209ENST00000508871 FCHSD2O94868 740 aa4.87□□□□□ -1.63
NEDD4-209ENST00000508871 SSBP05455 408 aaKnown RBP eCLIP4.87□□□□□ -1.63
NEDD4-209ENST00000508871 ARID4AP29374 1257 aaPredicted RBP4.87□□□□□ -1.63
NEDD4-209ENST00000508871 ZNF644Q9H582 1327 aaPredicted RBP4.87□□□□□ -1.63
NEDD4-209ENST00000508871 SPDYE5A6NIY4 337 aa4.87□□□□□ -1.63
NEDD4-209ENST00000508871 TMC2Q8TDI7 906 aa4.87□□□□□ -1.63
NEDD4-209ENST00000508871 DYTNA2CJ06 578 aa4.86□□□□□ -1.63
NEDD4-209ENST00000508871 TBC1D12O60347 775 aa4.86□□□□□ -1.63
NEDD4-209ENST00000508871 NEFHP12036 1026 aa4.86□□□□□ -1.63
NEDD4-209ENST00000508871 CLK2P49760 499 aaKnown RBP4.86□□□□□ -1.63
NEDD4-209ENST00000508871 DPH6Q7L8W6 267 aa4.86□□□□□ -1.63
NEDD4-209ENST00000508871 PRKAG2Q9UGJ0 569 aa4.86□□□□□ -1.63
NEDD4-209ENST00000508871 GNPATO15228 680 aa4.86□□□□□ -1.63
NEDD4-209ENST00000508871 CREB3O43889 395 aa4.86□□□□□ -1.63
NEDD4-209ENST00000508871 TMED8Q6PL24 325 aaPredicted RBP4.86□□□□□ -1.63
NEDD4-209ENST00000508871 ABCC3O15438 1527 aa4.86□□□□□ -1.63
NEDD4-209ENST00000508871 PTPROQ16827 1216 aa4.86□□□□□ -1.63
NEDD4-209ENST00000508871 INPP5FQ9Y2H2 1132 aa4.86□□□□□ -1.63
NEDD4-209ENST00000508871 UGGT1Q9NYU2 1555 aa4.86□□□□□ -1.63
NEDD4-209ENST00000508871 ARHGAP31Q2M1Z3 1444 aa4.86□□□□□ -1.63
NEDD4-209ENST00000508871 SCAPERQ9BY12 1400 aa4.86□□□□□ -1.63
NEDD4-209ENST00000508871 HOXA2O43364 376 aa4.86□□□□□ -1.63
NEDD4-209ENST00000508871 NBPF7P0C2Y1 421 aaPredicted RBP4.86□□□□□ -1.63
NEDD4-209ENST00000508871 DIXDC1Q155Q3 683 aa4.86□□□□□ -1.63
NEDD4-209ENST00000508871 RRP7BPQ9NSQ0 103 aa4.86□□□□□ -1.63
NEDD4-209ENST00000508871 NRXN1Q9ULB1 1477 aa4.86□□□□□ -1.63
NEDD4-209ENST00000508871 CLGNO14967 610 aa4.86□□□□□ -1.63
NEDD4-209ENST00000508871 ERCC3P19447 782 aa4.85□□□□□ -1.63
NEDD4-209ENST00000508871 PDE3BQ13370 1112 aa4.85□□□□□ -1.63
NEDD4-209ENST00000508871 EAPPQ56P03 285 aaPredicted RBP4.85□□□□□ -1.63
NEDD4-209ENST00000508871 BTN2A1Q7KYR7 527 aa4.85□□□□□ -1.63
NEDD4-209ENST00000508871 HINFPQ9BQA5 517 aa4.85□□□□□ -1.63
NEDD4-209ENST00000508871 KLHL42Q9P2K6 505 aa4.85□□□□□ -1.63
NEDD4-209ENST00000508871 COG6Q9Y2V7 657 aa4.85□□□□□ -1.63
NEDD4-209ENST00000508871 SYNMO15061 1565 aa4.85□□□□□ -1.63
NEDD4-209ENST00000508871 CCER2I3L3R5 266 aa4.85□□□□□ -1.63
NEDD4-209ENST00000508871 GIGYF1O75420 1035 aaPredicted RBP4.85□□□□□ -1.63
NEDD4-209ENST00000508871 JDP2Q8WYK2 163 aa4.85□□□□□ -1.63
NEDD4-209ENST00000508871 ATP6V1E2Q96A05 226 aa4.85□□□□□ -1.63
NEDD4-209ENST00000508871 PLSCR2Q9NRY7 297 aa4.85□□□□□ -1.63
NEDD4-209ENST00000508871 TERF2IPQ9NYB0 399 aa4.85□□□□□ -1.63
NEDD4-209ENST00000508871 MAP2K5Q13163 448 aa4.85□□□□□ -1.63
NEDD4-209ENST00000508871 LONRF3Q496Y0 759 aa4.85□□□□□ -1.63
NEDD4-209ENST00000508871 HDGFL2Q7Z4V5 671 aaPredicted RBP4.85□□□□□ -1.63
NEDD4-209ENST00000508871 PROCA1Q8NCQ7 364 aaPredicted RBP4.85□□□□□ -1.63
NEDD4-209ENST00000508871 SIGLEC1Q9BZZ2 1709 aa4.85□□□□□ -1.63
NEDD4-209ENST00000508871 CNTLNQ9NXG0 1405 aa4.84□□□□□ -1.63
NEDD4-209ENST00000508871 TSPY2A6NKD2 308 aa4.84□□□□□ -1.63
NEDD4-209ENST00000508871 TRIM6-TRIM34B2RNG4 842 aa4.84□□□□□ -1.63
NEDD4-209ENST00000508871 ZRANB2O95218 330 aaKnown RBP eCLIP4.84□□□□□ -1.63
NEDD4-209ENST00000508871 TSPY3P0CV98 308 aa4.84□□□□□ -1.63
NEDD4-209ENST00000508871 TSPY8P0CW00 308 aa4.84□□□□□ -1.63
NEDD4-209ENST00000508871 TSPY1Q01534 308 aa4.84□□□□□ -1.63
NEDD4-209ENST00000508871 DDX12PQ92771 950 aa4.84□□□□□ -1.63
NEDD4-209ENST00000508871 NOL12Q9UGY1 213 aaKnown RBP eCLIP4.84□□□□□ -1.63
NEDD4-209ENST00000508871 SPAG9O60271 1321 aaKnown RBP4.84□□□□□ -1.63
NEDD4-209ENST00000508871 HNRNPMP52272 730 aaKnown RBP eCLIP4.84□□□□□ -1.63
NEDD4-209ENST00000508871 NUP155O75694 1391 aa4.84□□□□□ -1.63
NEDD4-209ENST00000508871 SSTR3P32745 418 aaPredicted RBP4.84□□□□□ -1.63
NEDD4-209ENST00000508871 TMEM259Q4ZIN3 620 aa4.84□□□□□ -1.63
NEDD4-209ENST00000508871 ANKRD33BA6NCL7 494 aa4.84□□□□□ -1.64
NEDD4-209ENST00000508871 HSP90AB1P08238 724 aaKnown RBP4.84□□□□□ -1.64
NEDD4-209ENST00000508871 LMNB1P20700 586 aa4.84□□□□□ -1.64
NEDD4-209ENST00000508871 FBXW10Q5XX13 1052 aa4.84□□□□□ -1.64
NEDD4-209ENST00000508871 KSR2Q6VAB6 950 aa4.84□□□□□ -1.64
NEDD4-209ENST00000508871 FERMT3Q86UX7 667 aa4.84□□□□□ -1.64
NEDD4-209ENST00000508871 TRIM52Q96A61 297 aa4.84□□□□□ -1.64
NEDD4-209ENST00000508871 KNDC1Q76NI1 1749 aa4.84□□□□□ -1.64
NEDD4-209ENST00000508871 CCDC144AA2RUR9 1427 aa4.84□□□□□ -1.64
NEDD4-209ENST00000508871 PSMD2Q13200 908 aa4.83□□□□□ -1.64
NEDD4-209ENST00000508871 SKIV2LQ15477 1246 aaKnown RBP4.83□□□□□ -1.64
NEDD4-209ENST00000508871 TBC1D2BQ9UPU7 963 aa4.83□□□□□ -1.64
NEDD4-209ENST00000508871 FRMD4BQ9Y2L6 1034 aa4.83□□□□□ -1.64
NEDD4-209ENST00000508871 PSEN1P49768 467 aa4.83□□□□□ -1.64
NEDD4-209ENST00000508871 NAP1L1P55209 391 aaKnown RBP4.83□□□□□ -1.64
NEDD4-209ENST00000508871 CKAP2LQ8IYA6 745 aa4.83□□□□□ -1.64
NEDD4-209ENST00000508871 SCLT1Q96NL6 688 aa4.83□□□□□ -1.64
NEDD4-209ENST00000508871 SNRKQ9NRH2 765 aa4.83□□□□□ -1.64
NEDD4-209ENST00000508871 MAP3K7O43318 606 aa4.83□□□□□ -1.64
NEDD4-209ENST00000508871 VAC14Q08AM6 782 aa4.83□□□□□ -1.64
NEDD4-209ENST00000508871 HELBQ8NG08 1087 aaPredicted RBP4.83□□□□□ -1.64
NEDD4-209ENST00000508871 SMAD5Q99717 465 aaKnown RBP4.83□□□□□ -1.64
NEDD4-209ENST00000508871 NEUROD4Q9HD90 331 aa4.83□□□□□ -1.64
NEDD4-209ENST00000508871 GPRASP1Q5JY77 1395 aa4.83□□□□□ -1.64
NEDD4-209ENST00000508871 TSPOAP1O95153 1857 aa4.83□□□□□ -1.64
NEDD4-209ENST00000508871 H3BRB1 525 aa4.83□□□□□ -1.64
NEDD4-209ENST00000508871 TUT1Q9H6E5 874 aaKnown RBP4.83□□□□□ -1.64
NEDD4-209ENST00000508871 MAGEC2Q9UBF1 373 aaPredicted RBP4.83□□□□□ -1.64
NEDD4-209ENST00000508871 CHIC2Q9UKJ5 165 aa4.83□□□□□ -1.64
NEDD4-209ENST00000508871 PCDHB8Q9UN66 801 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms