RNA–Protein interactions for RNA: ENST00000508871.5

NEDD4-209, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best)

Gene NEDD4, Length 5,707 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-209ENST00000508871 NISCHQ9Y2I1 1504 aa7.78□□□□□ -1.16
NEDD4-209ENST00000508871 CHIC1Q5VXU3 224 aa7.76□□□□□ -1.17
NEDD4-209ENST00000508871 EHMT2Q96KQ7 1210 aa7.67□□□□□ -1.18
NEDD4-209ENST00000508871 AEBP2Q6ZN18 517 aaPredicted RBP7.5□□□□□ -1.21
NEDD4-209ENST00000508871 SLC24A1O60721 1099 aa7.48□□□□□ -1.21
NEDD4-209ENST00000508871 CCDC180Q9P1Z9 1646 aa7□□□□□ -1.29
NEDD4-209ENST00000508871 RANGAP1P46060 587 aaPredicted RBP6.96□□□□□ -1.29
NEDD4-209ENST00000508871 DCAF8L2P0C7V8 631 aa6.94□□□□□ -1.3
NEDD4-209ENST00000508871 AMER1Q5JTC6 1135 aaPredicted RBP6.9□□□□□ -1.3
NEDD4-209ENST00000508871 PLPPR3Q6T4P5 718 aa6.88□□□□□ -1.31
NEDD4-209ENST00000508871 RTN4Q9NQC3 1192 aaKnown RBP6.8□□□□□ -1.32
NEDD4-209ENST00000508871 SLC4A1APQ9BWU0 796 aaKnown RBP6.78□□□□□ -1.32
NEDD4-209ENST00000508871 KCNA4P22459 653 aa6.71□□□□□ -1.33
NEDD4-209ENST00000508871 MYT1Q01538 1121 aa6.7□□□□□ -1.34
NEDD4-209ENST00000508871 PHF23Q9BUL5 403 aaPredicted RBP6.69□□□□□ -1.34
NEDD4-209ENST00000508871 HAP1P54257 671 aaPredicted RBP6.66□□□□□ -1.34
NEDD4-209ENST00000508871 PELP1Q8IZL8 1130 aaKnown RBP6.64□□□□□ -1.35
NEDD4-209ENST00000508871 ERICH6Q7L0X2 663 aa6.62□□□□□ -1.35
NEDD4-209ENST00000508871 DCAF1Q9Y4B6 1507 aa6.6□□□□□ -1.35
NEDD4-209ENST00000508871 DAXXQ9UER7 740 aaPredicted RBP6.59□□□□□ -1.35
NEDD4-209ENST00000508871 ZCCHC6Q5VYS8 1495 aaKnown RBP6.59□□□□□ -1.35
NEDD4-209ENST00000508871 BCANQ96GW7 911 aa6.56□□□□□ -1.36
NEDD4-209ENST00000508871 NCBP3Q53F19 620 aaKnown RBP6.55□□□□□ -1.36
NEDD4-209ENST00000508871 CSRNP3Q8WYN3 585 aa6.55□□□□□ -1.36
NEDD4-209ENST00000508871 MYO15BQ96JP2 1530 aa6.53□□□□□ -1.36
NEDD4-209ENST00000508871 PRKCSHP14314 528 aaPredicted RBP6.51□□□□□ -1.37
NEDD4-209ENST00000508871 TPRNQ4KMQ1 711 aa6.49□□□□□ -1.37
NEDD4-209ENST00000508871 TTBK1Q5TCY1 1321 aaPredicted RBP6.48□□□□□ -1.37
NEDD4-209ENST00000508871 TULP1O00294 542 aaPredicted RBP6.45□□□□□ -1.38
NEDD4-209ENST00000508871 HOMEZQ8IX15 550 aa6.45□□□□□ -1.38
NEDD4-209ENST00000508871 C14orf37Q86TY3 774 aa6.4□□□□□ -1.38
NEDD4-209ENST00000508871 SENP3Q9H4L4 574 aaPredicted RBP6.4□□□□□ -1.38
NEDD4-209ENST00000508871 NACADO15069 1562 aa6.4□□□□□ -1.38
NEDD4-209ENST00000508871 FKBP8Q14318 412 aa6.4□□□□□ -1.39
NEDD4-209ENST00000508871 MYT1LQ9UL68 1186 aa6.37□□□□□ -1.39
NEDD4-209ENST00000508871 NBR1Q14596 966 aa6.36□□□□□ -1.39
NEDD4-209ENST00000508871 PODXL2Q9NZ53 605 aa6.36□□□□□ -1.39
NEDD4-209ENST00000508871 ARXQ96QS3 562 aa6.35□□□□□ -1.39
NEDD4-209ENST00000508871 TAOK2Q9UL54 1235 aa6.33□□□□□ -1.4
NEDD4-209ENST00000508871 RB1CC1Q8TDY2 1594 aa6.31□□□□□ -1.4
NEDD4-209ENST00000508871 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.31□□□□□ -1.4
NEDD4-209ENST00000508871 CFAP44Q96MT7 982 aa6.26□□□□□ -1.41
NEDD4-209ENST00000508871 ADRA2BP18089 450 aa6.25□□□□□ -1.41
NEDD4-209ENST00000508871 UNC13AQ9UPW8 1703 aa6.23□□□□□ -1.41
NEDD4-209ENST00000508871 ABCC9O60706 1549 aa6.22□□□□□ -1.41
NEDD4-209ENST00000508871 PLCB2Q00722 1185 aa6.22□□□□□ -1.41
NEDD4-209ENST00000508871 GTF3C3Q9Y5Q9 886 aa6.21□□□□□ -1.41
NEDD4-209ENST00000508871 SHROOM4Q9ULL8 1493 aa6.21□□□□□ -1.42
NEDD4-209ENST00000508871 SUPT5HO00267 1087 aaKnown RBP6.19□□□□□ -1.42
NEDD4-209ENST00000508871 TIMELESSQ9UNS1 1208 aa6.18□□□□□ -1.42
NEDD4-209ENST00000508871 SCRIBQ14160 1630 aa6.18□□□□□ -1.42
NEDD4-209ENST00000508871 POLR3GLQ9BT43 218 aa6.18□□□□□ -1.42
NEDD4-209ENST00000508871 NPM2Q86SE8 214 aaKnown RBP6.17□□□□□ -1.42
NEDD4-209ENST00000508871 ARID3AQ99856 593 aa6.15□□□□□ -1.42
NEDD4-209ENST00000508871 PPP4R3CPQ6ZMV5 832 aa6.14□□□□□ -1.43
NEDD4-209ENST00000508871 EIF5BO60841 1220 aaKnown RBP6.12□□□□□ -1.43
NEDD4-209ENST00000508871 PAXIP1Q6ZW49 1069 aaPredicted RBP6.11□□□□□ -1.43
NEDD4-209ENST00000508871 KLHL34Q8N239 644 aa6.09□□□□□ -1.44
NEDD4-209ENST00000508871 VSIG10Q8N0Z9 540 aa6.07□□□□□ -1.44
NEDD4-209ENST00000508871 ATP1B4Q9UN42 357 aaPredicted RBP6.06□□□□□ -1.44
NEDD4-209ENST00000508871 FOXD4L1Q9NU39 408 aa6.06□□□□□ -1.44
NEDD4-209ENST00000508871 BICRAQ9NZM4 1560 aa6.06□□□□□ -1.44
NEDD4-209ENST00000508871 BAZ1AQ9NRL2 1556 aaPredicted RBP6.05□□□□□ -1.44
NEDD4-209ENST00000508871 CDK11BP21127 795 aaKnown RBP6.04□□□□□ -1.44
NEDD4-209ENST00000508871 CDK11AQ9UQ88 783 aaPredicted RBP6.04□□□□□ -1.44
NEDD4-209ENST00000508871 PEG3Q9GZU2 1588 aa6.03□□□□□ -1.44
NEDD4-209ENST00000508871 SMARCA4P51532 1647 aa6.03□□□□□ -1.44
NEDD4-209ENST00000508871 HMGB1P09429 215 aaKnown RBP6.02□□□□□ -1.45
NEDD4-209ENST00000508871 ZBTB7CA1YPR0 619 aa6.01□□□□□ -1.45
NEDD4-209ENST00000508871 SMARCA2P51531 1590 aa5.99□□□□□ -1.45
NEDD4-209ENST00000508871 TOP2AP11388 1531 aaKnown RBP5.97□□□□□ -1.45
NEDD4-209ENST00000508871 FBXO3Q9UK99 471 aa5.97□□□□□ -1.45
NEDD4-209ENST00000508871 RSF1Q96T23 1441 aaPredicted RBP5.97□□□□□ -1.45
NEDD4-209ENST00000508871 NPM3O75607 178 aaKnown RBP5.96□□□□□ -1.46
NEDD4-209ENST00000508871 FAM9AQ8IZU1 332 aaPredicted RBP5.95□□□□□ -1.46
NEDD4-209ENST00000508871 CCDC9Q9Y3X0 531 aaKnown RBP5.94□□□□□ -1.46
NEDD4-209ENST00000508871 WIZO95785 1651 aa5.94□□□□□ -1.46
NEDD4-209ENST00000508871 SCAF1Q9H7N4 1312 aaKnown RBP5.94□□□□□ -1.46
NEDD4-209ENST00000508871 PRDM2Q13029 1718 aa5.94□□□□□ -1.46
NEDD4-209ENST00000508871 MROH2BQ7Z745 1585 aa5.94□□□□□ -1.46
NEDD4-209ENST00000508871 EIF4G1Q04637 1599 aaKnown RBP5.93□□□□□ -1.46
NEDD4-209ENST00000508871 SPRYD3Q8NCJ5 442 aa5.92□□□□□ -1.46
NEDD4-209ENST00000508871 HMGXB3Q12766 1538 aa5.91□□□□□ -1.46
NEDD4-209ENST00000508871 TMEM132AQ24JP5 1023 aa5.9□□□□□ -1.46
NEDD4-209ENST00000508871 PPP6R1Q9UPN7 881 aa5.9□□□□□ -1.46
NEDD4-209ENST00000508871 CECR2Q9BXF3 1484 aa5.89□□□□□ -1.47
NEDD4-209ENST00000508871 FOXD1Q16676 465 aa5.89□□□□□ -1.47
NEDD4-209ENST00000508871 PIAS4Q8N2W9 510 aaPredicted RBP5.88□□□□□ -1.47
NEDD4-209ENST00000508871 ECM2O94769 699 aaPredicted RBP5.86□□□□□ -1.47
NEDD4-209ENST00000508871 PDIA4P13667 645 aaKnown RBP5.85□□□□□ -1.47
NEDD4-209ENST00000508871 NEUROD2Q15784 382 aa5.85□□□□□ -1.47
NEDD4-209ENST00000508871 ZBTB22O15209 634 aa5.84□□□□□ -1.48
NEDD4-209ENST00000508871 FBLN2P98095 1184 aa5.83□□□□□ -1.48
NEDD4-209ENST00000508871 ATAD2BQ9ULI0 1458 aa5.82□□□□□ -1.48
NEDD4-209ENST00000508871 CHGAP10645 457 aaKnown RBP5.82□□□□□ -1.48
NEDD4-209ENST00000508871 USP35Q9P2H5 1018 aa5.82□□□□□ -1.48
NEDD4-209ENST00000508871 CIZ1Q9ULV3 898 aaPredicted RBP5.81□□□□□ -1.48
NEDD4-209ENST00000508871 NCAPD3P42695 1498 aa5.81□□□□□ -1.48
NEDD4-209ENST00000508871 CCER1Q8TC90 406 aaPredicted RBP5.81□□□□□ -1.48
NEDD4-209ENST00000508871 BAZ1BQ9UIG0 1483 aaKnown RBP5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms