RNA–Protein interactions for RNA: ENSMUST00000005841.15

Ctcf-201, Transcript of Transcriptional repressor CTCF, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ctcf, Length 3,782 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ctcf-201ENSMUST00000005841 Chd4Q6PDQ2 1915 aaKnown RBP20.78■□□□□ 0.92
Ctcf-201ENSMUST00000005841 Dip2cE9PWR4 1557 aa20.78■□□□□ 0.92
Ctcf-201ENSMUST00000005841 Nectin2P32507 530 aa20.77■□□□□ 0.92
Ctcf-201ENSMUST00000005841 Ncbp1Q3UYV9 790 aaKnown RBP20.77■□□□□ 0.92
Ctcf-201ENSMUST00000005841 Gdpd2Q9ESM6 539 aa20.77■□□□□ 0.92
Ctcf-201ENSMUST00000005841 Mcm2P97310 904 aa20.76■□□□□ 0.91
Ctcf-201ENSMUST00000005841 Nol8Q3UHX0 1147 aaKnown RBP20.76■□□□□ 0.91
Ctcf-201ENSMUST00000005841 GorabQ8BRM2 368 aa20.76■□□□□ 0.91
Ctcf-201ENSMUST00000005841 Gm45015A0A140LII9 184 aa20.76■□□□□ 0.91
Ctcf-201ENSMUST00000005841 Gm18336A0A140LIU8 765 aa20.76■□□□□ 0.91
Ctcf-201ENSMUST00000005841 DekQ7TNV0 380 aaKnown RBP20.75■□□□□ 0.91
Ctcf-201ENSMUST00000005841 PalmQ9Z0P4 383 aa20.75■□□□□ 0.91
Ctcf-201ENSMUST00000005841 Zkscan16A2ALW2 728 aa20.75■□□□□ 0.91
Ctcf-201ENSMUST00000005841 NcapgE9PWG6 1004 aa20.75■□□□□ 0.91
Ctcf-201ENSMUST00000005841 Uhrf1bp1lA2RSJ4 1457 aa20.74■□□□□ 0.91
Ctcf-201ENSMUST00000005841 Prdm10Q3UTQ7 1184 aa20.73■□□□□ 0.91
Ctcf-201ENSMUST00000005841 Chmp4bQ9D8B3 224 aaKnown RBP20.73■□□□□ 0.91
Ctcf-201ENSMUST00000005841 Erich6bQ9D4S6 220 aa20.73■□□□□ 0.91
Ctcf-201ENSMUST00000005841 Gadd45bP22339 160 aa20.72■□□□□ 0.91
Ctcf-201ENSMUST00000005841 Ccdc94Q9D6J3 314 aa20.72■□□□□ 0.91
Ctcf-201ENSMUST00000005841 Slit2Q9R1B9 1521 aa20.72■□□□□ 0.91
Ctcf-201ENSMUST00000005841 Syce3B5KM66 88 aa20.71■□□□□ 0.91
Ctcf-201ENSMUST00000005841 Rbm27Q5SFM8 1060 aaKnown RBP20.71■□□□□ 0.91
Ctcf-201ENSMUST00000005841 Fam13aQ8BGI4 693 aa20.71■□□□□ 0.91
Ctcf-201ENSMUST00000005841 Bach2P97303 839 aa20.71■□□□□ 0.91
Ctcf-201ENSMUST00000005841 Atg4a-psA0A0G2JFS9 396 aa20.71■□□□□ 0.91
Ctcf-201ENSMUST00000005841 Chl1P70232 1209 aa20.71■□□□□ 0.91
Ctcf-201ENSMUST00000005841 Atg4aQ8C9S8 396 aa20.71■□□□□ 0.91
Ctcf-201ENSMUST00000005841 Pik3c2bE9QAN8 1632 aa20.7■□□□□ 0.91
Ctcf-201ENSMUST00000005841 Mum1Q6DID5 682 aa20.7■□□□□ 0.9
Ctcf-201ENSMUST00000005841 PtprtQ99M80 1454 aa20.7■□□□□ 0.9
Ctcf-201ENSMUST00000005841 Chd2E9PZM4 1827 aaKnown RBP20.7■□□□□ 0.9
Ctcf-201ENSMUST00000005841 OvosQ3UU35 1456 aa20.69■□□□□ 0.9
Ctcf-201ENSMUST00000005841 Trpm3Q5F4S9 1721 aa20.69■□□□□ 0.9
Ctcf-201ENSMUST00000005841 Sos1Q62245 1319 aa20.69■□□□□ 0.9
Ctcf-201ENSMUST00000005841 Gm45140A0A0N4SUM8 220 aa20.68■□□□□ 0.9
Ctcf-201ENSMUST00000005841 Zc3h13E9Q784 1729 aaKnown RBP20.68■□□□□ 0.9
Ctcf-201ENSMUST00000005841 Frmpd2A0A140LI67 1392 aa20.68■□□□□ 0.9
Ctcf-201ENSMUST00000005841 Grpel1Q99LP6 217 aa20.68■□□□□ 0.9
Ctcf-201ENSMUST00000005841 Prrc2bQ7TPM1 1486 aaKnown RBP20.68■□□□□ 0.9
Ctcf-201ENSMUST00000005841 Nfatc2ipO09130 412 aa20.67■□□□□ 0.9
Ctcf-201ENSMUST00000005841 Eif4g2Q62448 906 aaKnown RBP20.67■□□□□ 0.9
Ctcf-201ENSMUST00000005841 Mx2Q9WVP9 655 aa20.67■□□□□ 0.9
Ctcf-201ENSMUST00000005841 Ccdc146E9Q9F7 977 aa20.67■□□□□ 0.9
Ctcf-201ENSMUST00000005841 Scaf1Q5U4C3 1256 aaKnown RBP20.66■□□□□ 0.9
Ctcf-201ENSMUST00000005841 Gnai1B2RSH2 354 aa20.66■□□□□ 0.9
Ctcf-201ENSMUST00000005841 Ppp1r15aP17564 657 aa20.66■□□□□ 0.9
Ctcf-201ENSMUST00000005841 PtmsQ9D0J8 101 aaKnown RBP20.66■□□□□ 0.9
Ctcf-201ENSMUST00000005841 Gnai3Q9DC51 354 aa20.66■□□□□ 0.9
Ctcf-201ENSMUST00000005841 Ccdc7Q9D541 371 aa20.66■□□□□ 0.9
Ctcf-201ENSMUST00000005841 Rab11fip3Q8CHD8 1047 aa20.65■□□□□ 0.9
Ctcf-201ENSMUST00000005841 Kiaa0753Q6A000 959 aa20.65■□□□□ 0.9
Ctcf-201ENSMUST00000005841 Nol11Q8BJW5 723 aaKnown RBP20.65■□□□□ 0.9
Ctcf-201ENSMUST00000005841 Chd1lQ9CXF7 900 aa20.65■□□□□ 0.9
Ctcf-201ENSMUST00000005841 IqubQ8CDK3 788 aa20.65■□□□□ 0.9
Ctcf-201ENSMUST00000005841 Tmco5bQ80X59 307 aa20.64■□□□□ 0.9
Ctcf-201ENSMUST00000005841 Ubr1O70481 1757 aa20.64■□□□□ 0.89
Ctcf-201ENSMUST00000005841 Tnrc6bQ8BKI2 1810 aaKnown RBP20.63■□□□□ 0.89
Ctcf-201ENSMUST00000005841 Stk11ipQ3TAA7 1072 aa20.63■□□□□ 0.89
Ctcf-201ENSMUST00000005841 Glipr1l2Q9CQ35 332 aa20.63■□□□□ 0.89
Ctcf-201ENSMUST00000005841 Ptgs1P22437 602 aa20.63■□□□□ 0.89
Ctcf-201ENSMUST00000005841 Klhl34A2AI76 644 aa20.62■□□□□ 0.89
Ctcf-201ENSMUST00000005841 LlphQ9D945 130 aaKnown RBP20.62■□□□□ 0.89
Ctcf-201ENSMUST00000005841 Msh6P54276 1358 aaKnown RBP20.62■□□□□ 0.89
Ctcf-201ENSMUST00000005841 Aifm3Q3TY86 605 aa20.62■□□□□ 0.89
Ctcf-201ENSMUST00000005841 Lemd3Q9WU40 921 aa20.61■□□□□ 0.89
Ctcf-201ENSMUST00000005841 SrrtQ99MR6 875 aaKnown RBP20.61■□□□□ 0.89
Ctcf-201ENSMUST00000005841 Gripap1Q8VD04 806 aa20.6■□□□□ 0.89
Ctcf-201ENSMUST00000005841 PtmaP26350 111 aa20.6■□□□□ 0.89
Ctcf-201ENSMUST00000005841 Atp2b3Q0VF55 1220 aa20.6■□□□□ 0.89
Ctcf-201ENSMUST00000005841 Map3k19E9Q3S4 1311 aa20.6■□□□□ 0.89
Ctcf-201ENSMUST00000005841 Kif4P33174 1231 aa20.59■□□□□ 0.89
Ctcf-201ENSMUST00000005841 Erc2Q6PH08 957 aa20.59■□□□□ 0.89
Ctcf-201ENSMUST00000005841 Scn7aB1AYL1 1681 aa20.59■□□□□ 0.89
Ctcf-201ENSMUST00000005841 Gsto1O09131 240 aa20.59■□□□□ 0.89
Ctcf-201ENSMUST00000005841 CtifQ6PEE2 600 aaKnown RBP20.59■□□□□ 0.89
Ctcf-201ENSMUST00000005841 NexnQ7TPW1 607 aa20.59■□□□□ 0.89
Ctcf-201ENSMUST00000005841 Ccar2Q8VDP4 922 aaKnown RBP20.59■□□□□ 0.89
Ctcf-201ENSMUST00000005841 Ms4a2P20490 235 aa20.59■□□□□ 0.89
Ctcf-201ENSMUST00000005841 N4bp2F8VQG7 1678 aaKnown RBP20.58■□□□□ 0.89
Ctcf-201ENSMUST00000005841 Elmsan1E9Q2I4 1089 aaKnown RBP20.58■□□□□ 0.89
Ctcf-201ENSMUST00000005841 Smarca5Q91ZW3 1051 aaKnown RBP20.58■□□□□ 0.89
Ctcf-201ENSMUST00000005841 HnrnpuQ8VEK3 800 aaKnown RBP20.58■□□□□ 0.88
Ctcf-201ENSMUST00000005841 Rbm42Q91V81 474 aaKnown RBP20.58■□□□□ 0.88
Ctcf-201ENSMUST00000005841 Anapc15P60007 132 aa20.58■□□□□ 0.88
Ctcf-201ENSMUST00000005841 Kcnf1Q7TSH7 493 aa20.58■□□□□ 0.88
Ctcf-201ENSMUST00000005841 NpatQ8BMA5 1420 aa20.57■□□□□ 0.88
Ctcf-201ENSMUST00000005841 Map2P20357 1828 aa20.57■□□□□ 0.88
Ctcf-201ENSMUST00000005841 Rtf1A2AQ19 715 aaKnown RBP20.56■□□□□ 0.88
Ctcf-201ENSMUST00000005841 RestQ8VIG1 1082 aa20.56■□□□□ 0.88
Ctcf-201ENSMUST00000005841 Ptpn23Q6PB44 1692 aa20.56■□□□□ 0.88
Ctcf-201ENSMUST00000005841 Rsph6aQ8CDR2 708 aa20.56■□□□□ 0.88
Ctcf-201ENSMUST00000005841 Ercc6l2Q9JIM3 1537 aa20.56■□□□□ 0.88
Ctcf-201ENSMUST00000005841 PtpruB1AUH1 1446 aa20.56■□□□□ 0.88
Ctcf-201ENSMUST00000005841 PtprvP70289 1705 aa20.56■□□□□ 0.88
Ctcf-201ENSMUST00000005841 Irx4Q9QY61 515 aa20.56■□□□□ 0.88
Ctcf-201ENSMUST00000005841 Prune1Q8BIW1 454 aa20.55■□□□□ 0.88
Ctcf-201ENSMUST00000005841 DpydQ8CHR6 1025 aa20.55■□□□□ 0.88
Ctcf-201ENSMUST00000005841 Zfp51Q3U4L8 781 aa20.55■□□□□ 0.88
Ctcf-201ENSMUST00000005841 Ric3Q8BPM6 367 aa20.55■□□□□ 0.88
Retrieved 100 of 22,080 RNA–protein pairs in 30.6 ms