RNA–Protein interactions for RNA: ENST00000580287.5

CDK5RAP3-217, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,609 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-217ENST00000580287 PDE1CQ14123 709 aaPredicted RBP12.73□□□□□ -0.37
CDK5RAP3-217ENST00000580287 TAF11Q15544 211 aa12.73□□□□□ -0.37
CDK5RAP3-217ENST00000580287 CNGA3Q16281 694 aa12.73□□□□□ -0.37
CDK5RAP3-217ENST00000580287 ZNF783Q6ZMS7 281 aa12.73□□□□□ -0.37
CDK5RAP3-217ENST00000580287 CYS1Q717R9 158 aa12.73□□□□□ -0.37
CDK5RAP3-217ENST00000580287 TRIM42Q8IWZ5 723 aa12.73□□□□□ -0.37
CDK5RAP3-217ENST00000580287 RYBPQ8N488 228 aaPredicted RBP12.73□□□□□ -0.37
CDK5RAP3-217ENST00000580287 BLOC1S5Q8TDH9 187 aa12.73□□□□□ -0.37
CDK5RAP3-217ENST00000580287 IFT43Q96FT9 208 aa12.73□□□□□ -0.37
CDK5RAP3-217ENST00000580287 NMUR2Q9GZQ4 415 aa12.73□□□□□ -0.37
CDK5RAP3-217ENST00000580287 IL22Q9GZX6 179 aa12.73□□□□□ -0.37
CDK5RAP3-217ENST00000580287 CDH7Q9ULB5 785 aa12.73□□□□□ -0.37
CDK5RAP3-217ENST00000580287 LOC285095A0A1B0GVY8 99 aa12.73□□□□□ -0.37
CDK5RAP3-217ENST00000580287 A6NHS1 94 aa12.73□□□□□ -0.37
CDK5RAP3-217ENST00000580287 ZNF189O75820 626 aaPredicted RBP12.73□□□□□ -0.37
CDK5RAP3-217ENST00000580287 PIGNO95427 931 aa12.73□□□□□ -0.37
CDK5RAP3-217ENST00000580287 LINGO3P0C6S8 592 aa12.73□□□□□ -0.37
CDK5RAP3-217ENST00000580287 GP5P40197 560 aa12.73□□□□□ -0.37
CDK5RAP3-217ENST00000580287 SERPINH1P50454 418 aaKnown RBP12.73□□□□□ -0.37
CDK5RAP3-217ENST00000580287 TRAF2Q12933 501 aa12.73□□□□□ -0.37
CDK5RAP3-217ENST00000580287 MSLNQ13421 630 aaPredicted RBP12.73□□□□□ -0.37
CDK5RAP3-217ENST00000580287 CES5AQ6NT32 575 aa12.73□□□□□ -0.37
CDK5RAP3-217ENST00000580287 TMEM135Q86UB9 458 aa12.73□□□□□ -0.37
CDK5RAP3-217ENST00000580287 BBS5Q8N3I7 341 aa12.73□□□□□ -0.37
CDK5RAP3-217ENST00000580287 CADM1Q9BY67 442 aaKnown RBP12.73□□□□□ -0.37
CDK5RAP3-217ENST00000580287 CIPCQ9C0C6 399 aa12.73□□□□□ -0.37
CDK5RAP3-217ENST00000580287 ZFP14Q9HCL3 533 aa12.73□□□□□ -0.37
CDK5RAP3-217ENST00000580287 ACSS2Q9NR19 701 aa12.73□□□□□ -0.37
CDK5RAP3-217ENST00000580287 SPATS2LQ9NUQ6 558 aaKnown RBP12.73□□□□□ -0.37
CDK5RAP3-217ENST00000580287 RAI2Q9Y5P3 530 aa12.73□□□□□ -0.37
CDK5RAP3-217ENST00000580287 ARL5AQ9Y689 179 aa12.73□□□□□ -0.37
CDK5RAP3-217ENST00000580287 GOLGA8CPA6NN73 597 aa12.72□□□□□ -0.37
CDK5RAP3-217ENST00000580287 ENO4A6NNW6 628 aa12.72□□□□□ -0.37
CDK5RAP3-217ENST00000580287 PEX11AO75192 247 aa12.72□□□□□ -0.37
CDK5RAP3-217ENST00000580287 LYPLA1O75608 230 aaPredicted RBP12.72□□□□□ -0.37
CDK5RAP3-217ENST00000580287 PAPLNO95428 1278 aa12.72□□□□□ -0.37
CDK5RAP3-217ENST00000580287 ADH5P11766 374 aa12.72□□□□□ -0.37
CDK5RAP3-217ENST00000580287 SRCP12931 536 aa12.72□□□□□ -0.37
CDK5RAP3-217ENST00000580287 NPY2RP49146 381 aa12.72□□□□□ -0.37
CDK5RAP3-217ENST00000580287 FASTKD1Q53R41 847 aaKnown RBP12.72□□□□□ -0.37
CDK5RAP3-217ENST00000580287 RETSATQ6NUM9 610 aa12.72□□□□□ -0.37
CDK5RAP3-217ENST00000580287 KCNMB4Q86W47 210 aa12.72□□□□□ -0.37
CDK5RAP3-217ENST00000580287 RMDN1Q96DB5 314 aa12.72□□□□□ -0.37
CDK5RAP3-217ENST00000580287 NUDCD1Q96RS6 583 aa12.72□□□□□ -0.37
CDK5RAP3-217ENST00000580287 CPNE1Q99829 537 aa12.72□□□□□ -0.37
CDK5RAP3-217ENST00000580287 HPS4Q9NQG7 708 aa12.72□□□□□ -0.37
CDK5RAP3-217ENST00000580287 VPS45Q9NRW7 570 aa12.72□□□□□ -0.37
CDK5RAP3-217ENST00000580287 IARS2Q9NSE4 1012 aaKnown RBP12.72□□□□□ -0.37
CDK5RAP3-217ENST00000580287 GDE1Q9NZC3 331 aa12.72□□□□□ -0.37
CDK5RAP3-217ENST00000580287 A8MX80 341 aa12.72□□□□□ -0.37
CDK5RAP3-217ENST00000580287 PSMD3O43242 534 aa12.72□□□□□ -0.37
CDK5RAP3-217ENST00000580287 GLRA3O75311 464 aa12.72□□□□□ -0.37
CDK5RAP3-217ENST00000580287 TULP3O75386 442 aa12.72□□□□□ -0.37
CDK5RAP3-217ENST00000580287 VAPBO95292 243 aa12.72□□□□□ -0.37
CDK5RAP3-217ENST00000580287 BPGMP07738 259 aa12.72□□□□□ -0.37
CDK5RAP3-217ENST00000580287 SKIV2L2P42285 1042 aaKnown RBP12.72□□□□□ -0.37
CDK5RAP3-217ENST00000580287 STX3Q13277 289 aa12.72□□□□□ -0.37
CDK5RAP3-217ENST00000580287 RFTN1Q14699 578 aaPredicted RBP12.72□□□□□ -0.37
CDK5RAP3-217ENST00000580287 INO80DQ53TQ3 878 aaPredicted RBP12.72□□□□□ -0.37
CDK5RAP3-217ENST00000580287 PKN3Q6P5Z2 889 aa12.72□□□□□ -0.37
CDK5RAP3-217ENST00000580287 DCLK2Q8N568 766 aa12.72□□□□□ -0.37
CDK5RAP3-217ENST00000580287 LPCAT1Q8NF37 534 aa12.72□□□□□ -0.37
CDK5RAP3-217ENST00000580287 ACDQ96AP0 544 aa12.72□□□□□ -0.37
CDK5RAP3-217ENST00000580287 MOCOSQ96EN8 888 aa12.72□□□□□ -0.37
CDK5RAP3-217ENST00000580287 FAM83CQ9BQN1 747 aa12.72□□□□□ -0.37
CDK5RAP3-217ENST00000580287 OSBPL1AQ9BXW6 950 aa12.72□□□□□ -0.37
CDK5RAP3-217ENST00000580287 YIPF3Q9GZM5 350 aa12.72□□□□□ -0.37
CDK5RAP3-217ENST00000580287 SUDS3Q9H7L9 328 aaPredicted RBP12.72□□□□□ -0.37
CDK5RAP3-217ENST00000580287 CAB39LQ9H9S4 337 aa12.72□□□□□ -0.37
CDK5RAP3-217ENST00000580287 ZNF358Q9NW07 568 aa12.72□□□□□ -0.37
CDK5RAP3-217ENST00000580287 PCDHB9Q9Y5E1 797 aa12.72□□□□□ -0.37
CDK5RAP3-217ENST00000580287 SPO11Q9Y5K1 396 aa12.72□□□□□ -0.37
CDK5RAP3-217ENST00000580287 OR51F1A6NGY5 319 aa12.71□□□□□ -0.37
CDK5RAP3-217ENST00000580287 SOBPA7XYQ1 873 aa12.71□□□□□ -0.37
CDK5RAP3-217ENST00000580287 USP1O94782 785 aa12.71□□□□□ -0.37
CDK5RAP3-217ENST00000580287 HAUS5O94927 633 aa12.71□□□□□ -0.37
CDK5RAP3-217ENST00000580287 LAMP2P13473 410 aa12.71□□□□□ -0.37
CDK5RAP3-217ENST00000580287 RCN2Q14257 317 aa12.71□□□□□ -0.37
CDK5RAP3-217ENST00000580287 KHDC1Q4VXA5 237 aaKnown RBP12.71□□□□□ -0.37
CDK5RAP3-217ENST00000580287 MBLAC2Q68D91 279 aa12.71□□□□□ -0.37
CDK5RAP3-217ENST00000580287 ALG1LQ6GMV1 187 aa12.71□□□□□ -0.37
CDK5RAP3-217ENST00000580287 TIFABQ6ZNK6 161 aa12.71□□□□□ -0.37
CDK5RAP3-217ENST00000580287 CRLF3Q8IUI8 442 aa12.71□□□□□ -0.37
CDK5RAP3-217ENST00000580287 ZNF398Q8TD17 642 aa12.71□□□□□ -0.37
CDK5RAP3-217ENST00000580287 NXPE3Q969Y0 559 aa12.71□□□□□ -0.37
CDK5RAP3-217ENST00000580287 NAF1Q96HR8 494 aaKnown RBP12.71□□□□□ -0.37
CDK5RAP3-217ENST00000580287 TRIB3Q96RU7 358 aa12.71□□□□□ -0.37
CDK5RAP3-217ENST00000580287 EBF4Q9BQW3 602 aa12.71□□□□□ -0.37
CDK5RAP3-217ENST00000580287 TDRD1Q9BXT4 1180 aaKnown RBP12.71□□□□□ -0.37
CDK5RAP3-217ENST00000580287 SNX15Q9NRS6 342 aa12.71□□□□□ -0.37
CDK5RAP3-217ENST00000580287 MKS1Q9NXB0 559 aa12.71□□□□□ -0.37
CDK5RAP3-217ENST00000580287 SOX13Q9UN79 622 aa12.71□□□□□ -0.37
CDK5RAP3-217ENST00000580287 FNDC3AQ9Y2H6 1198 aaKnown RBP12.71□□□□□ -0.37
CDK5RAP3-217ENST00000580287 MTO1Q9Y2Z2 717 aaKnown RBP12.71□□□□□ -0.37
CDK5RAP3-217ENST00000580287 A0A0C4DFX4 3053 aa12.71□□□□□ -0.38
CDK5RAP3-217ENST00000580287 PRRT4C9JH25 899 aa12.71□□□□□ -0.38
CDK5RAP3-217ENST00000580287 SLC9A3R1O14745 358 aaPredicted RBP12.71□□□□□ -0.38
CDK5RAP3-217ENST00000580287 ATP5HO75947 161 aa12.71□□□□□ -0.38
CDK5RAP3-217ENST00000580287 TCF3P15923 654 aa12.71□□□□□ -0.38
CDK5RAP3-217ENST00000580287 HOXB8P17481 243 aaPredicted RBP12.71□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms