RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 SCFD1Q8WVM8 642 aa8.06□□□□□ -1.12
SMAD4-209ENST00000589941 PRCCQ92733 491 aaPredicted RBP8.06□□□□□ -1.12
SMAD4-209ENST00000589941 NINJ1Q92982 152 aa8.06□□□□□ -1.12
SMAD4-209ENST00000589941 KCNC2Q96PR1 638 aa8.06□□□□□ -1.12
SMAD4-209ENST00000589941 CCNL2Q96S94 520 aaPredicted RBP8.06□□□□□ -1.12
SMAD4-209ENST00000589941 SEMA3CQ99985 751 aa8.06□□□□□ -1.12
SMAD4-209ENST00000589941 SPATA25Q9BR10 227 aa8.06□□□□□ -1.12
SMAD4-209ENST00000589941 NUP58Q9BVL2 599 aa8.06□□□□□ -1.12
SMAD4-209ENST00000589941 TMEM30AQ9NV96 361 aa8.06□□□□□ -1.12
SMAD4-209ENST00000589941 TRMT1Q9NXH9 659 aaKnown RBP8.06□□□□□ -1.12
SMAD4-209ENST00000589941 GTF3C4Q9UKN8 822 aa8.06□□□□□ -1.12
SMAD4-209ENST00000589941 L1RE1Q9UN81 338 aa8.06□□□□□ -1.12
SMAD4-209ENST00000589941 PCDHB6Q9Y5E3 794 aa8.06□□□□□ -1.12
SMAD4-209ENST00000589941 PCNX1Q96RV3 2341 aa8.06□□□□□ -1.12
SMAD4-209ENST00000589941 HIVEP3Q5T1R4 2406 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 PTPRJQ12913 1337 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 MTORP42345 2549 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 A0A1B0GVM2 712 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 VWA3AA6NCI4 1184 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 VILLO15195 856 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 ZSCAN12O43309 604 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 STX10O60499 249 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 ATP2C2O75185 946 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 TOM1L1O75674 476 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 SMC2O95347 1197 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 SEMA4FO95754 770 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 CISD3P0C7P0 127 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 JMJD7P0C870 316 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 TYRP14679 529 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 CACNA2D1P54289 1103 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 C21orf59P57076 290 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 TSPY1Q01534 308 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 MCL1Q07820 350 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 SMARCB1Q12824 385 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 ENPP2Q13822 863 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 STARD3Q14849 445 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 ZRSR1Q15695 479 aaKnown RBP8.05□□□□□ -1.12
SMAD4-209ENST00000589941 CALCRLQ16602 461 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 PIK3R6Q5UE93 754 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 KRBA2Q6ZNG9 492 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 METTL23Q86XA0 190 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 LSMEM2Q8N112 164 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 THEM5Q8N1Q8 247 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 ZNF366Q8N895 744 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 DTX3Q8N9I9 347 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 SORCS1Q8WY21 1168 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 SGF29Q96ES7 293 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 ATXN7L3BQ96GX2 97 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 ACE2Q9BYF1 805 aaPredicted RBP8.05□□□□□ -1.12
SMAD4-209ENST00000589941 SLC25A18Q9H1K4 315 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 PCED1AQ9H1Q7 454 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 TMEM60Q9H2L4 133 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 BHMT2Q9H2M3 363 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 PLEKHA5Q9HAU0 1116 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 SLC39A2Q9NP94 309 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 PLK2Q9NYY3 685 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 TRPM5Q9NZQ8 1165 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 NTMQ9P121 344 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 MAGEC2Q9UBF1 373 aaPredicted RBP8.05□□□□□ -1.12
SMAD4-209ENST00000589941 CROTQ9UKG9 612 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 PCDHA12Q9UN75 941 aa8.05□□□□□ -1.12
SMAD4-209ENST00000589941 SHANK1Q9Y566 2161 aa8.04□□□□□ -1.12
SMAD4-209ENST00000589941 LY6G6EA0A0G2JKS1 128 aa8.04□□□□□ -1.12
SMAD4-209ENST00000589941 A0A1W2PR77 199 aa8.04□□□□□ -1.12
SMAD4-209ENST00000589941 SLC12A8A0AV02 714 aa8.04□□□□□ -1.12
SMAD4-209ENST00000589941 COCHO43405 550 aa8.04□□□□□ -1.12
SMAD4-209ENST00000589941 NOBOXO60393 691 aa8.04□□□□□ -1.12
SMAD4-209ENST00000589941 HIP1RO75146 1068 aa8.04□□□□□ -1.12
SMAD4-209ENST00000589941 CLTAP09496 248 aa8.04□□□□□ -1.12
SMAD4-209ENST00000589941 ATP1A3P13637 1013 aa8.04□□□□□ -1.12
SMAD4-209ENST00000589941 RPL13P26373 211 aaKnown RBP8.04□□□□□ -1.12
SMAD4-209ENST00000589941 PBX1P40424 430 aa8.04□□□□□ -1.12
SMAD4-209ENST00000589941 TAF6P49848 677 aa8.04□□□□□ -1.12
SMAD4-209ENST00000589941 PDE6CP51160 858 aa8.04□□□□□ -1.12
SMAD4-209ENST00000589941 UBASH3AP57075 661 aa8.04□□□□□ -1.12
SMAD4-209ENST00000589941 PSMC1P62191 440 aaKnown RBP8.04□□□□□ -1.12
SMAD4-209ENST00000589941 DBPQ10586 325 aaPredicted RBP8.04□□□□□ -1.12
SMAD4-209ENST00000589941 TUBB2AQ13885 445 aa8.04□□□□□ -1.12
SMAD4-209ENST00000589941 MORC3Q14149 939 aa8.04□□□□□ -1.12
SMAD4-209ENST00000589941 NFE2Q16621 373 aaPredicted RBP8.04□□□□□ -1.12
SMAD4-209ENST00000589941 GEN1Q17RS7 908 aa8.04□□□□□ -1.12
SMAD4-209ENST00000589941 ERCC6LQ2NKX8 1250 aa8.04□□□□□ -1.12
SMAD4-209ENST00000589941 CFAP221Q4G0U5 840 aa8.04□□□□□ -1.12
SMAD4-209ENST00000589941 CPLX2Q6PUV4 134 aaKnown RBP8.04□□□□□ -1.12
SMAD4-209ENST00000589941 TPGS1Q6ZTW0 290 aa8.04□□□□□ -1.12
SMAD4-209ENST00000589941 VASH2Q86V25 355 aa8.04□□□□□ -1.12
SMAD4-209ENST00000589941 KIAA1958Q8N8K9 716 aa8.04□□□□□ -1.12
SMAD4-209ENST00000589941 MLKLQ8NB16 471 aa8.04□□□□□ -1.12
SMAD4-209ENST00000589941 KIFAP3Q92845 792 aa8.04□□□□□ -1.12
SMAD4-209ENST00000589941 ERCC4Q92889 916 aaPredicted RBP8.04□□□□□ -1.12
SMAD4-209ENST00000589941 MYLPFQ96A32 169 aa8.04□□□□□ -1.12
SMAD4-209ENST00000589941 SLC46A1Q96NT5 459 aa8.04□□□□□ -1.12
SMAD4-209ENST00000589941 TUBB2BQ9BVA1 445 aa8.04□□□□□ -1.12
SMAD4-209ENST00000589941 TTLL2Q9BWV7 592 aa8.04□□□□□ -1.12
SMAD4-209ENST00000589941 BBS2Q9BXC9 721 aa8.04□□□□□ -1.12
SMAD4-209ENST00000589941 KRTAP9-9Q9BYP9 154 aa8.04□□□□□ -1.12
SMAD4-209ENST00000589941 KRTAP9-4Q9BYQ2 154 aa8.04□□□□□ -1.12
SMAD4-209ENST00000589941 CCSER1Q9C0I3 900 aa8.04□□□□□ -1.12
SMAD4-209ENST00000589941 TUFT1Q9NNX1 390 aa8.04□□□□□ -1.12
SMAD4-209ENST00000589941 KMT5AQ9NQR1 393 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms