RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 AEBP2Q6ZN18 517 aaPredicted RBP30.88■■■□□ 2.53
SMAD4-209ENST00000589941 CHIC1Q5VXU3 224 aa30.07■■■□□ 2.4
SMAD4-209ENST00000589941 PHF23Q9BUL5 403 aaPredicted RBP26.52■■□□□ 1.84
SMAD4-209ENST00000589941 SENP3Q9H4L4 574 aaPredicted RBP26.07■■□□□ 1.76
SMAD4-209ENST00000589941 PLPPR3Q6T4P5 718 aa24.36■■□□□ 1.49
SMAD4-209ENST00000589941 FOXD1Q16676 465 aa24.29■■□□□ 1.48
SMAD4-209ENST00000589941 PPP6R1Q9UPN7 881 aa23.42■■□□□ 1.34
SMAD4-209ENST00000589941 ADRA2BP18089 450 aa23.37■■□□□ 1.33
SMAD4-209ENST00000589941 PIAS4Q8N2W9 510 aaPredicted RBP22.86■■□□□ 1.25
SMAD4-209ENST00000589941 MSH5O43196 834 aa22.29■■□□□ 1.16
SMAD4-209ENST00000589941 PPP4R3CPQ6ZMV5 832 aa21.53■■□□□ 1.04
SMAD4-209ENST00000589941 MAPK8IP2Q13387 824 aaPredicted RBP21.23■□□□□ 0.99
SMAD4-209ENST00000589941 SCAF1Q9H7N4 1312 aaKnown RBP21.23■□□□□ 0.99
SMAD4-209ENST00000589941 KCNA4P22459 653 aa21.07■□□□□ 0.96
SMAD4-209ENST00000589941 CNKSR2Q8WXI2 1034 aa20.88■□□□□ 0.93
SMAD4-209ENST00000589941 NCBP3Q53F19 620 aaKnown RBP20.87■□□□□ 0.93
SMAD4-209ENST00000589941 DMRT2Q9Y5R5 561 aa20.85■□□□□ 0.93
SMAD4-209ENST00000589941 NPM3O75607 178 aaKnown RBP20.67■□□□□ 0.9
SMAD4-209ENST00000589941 RNF216Q9NWF9 866 aaPredicted RBP20.47■□□□□ 0.87
SMAD4-209ENST00000589941 HOXD11P31277 338 aaPredicted RBP20.42■□□□□ 0.86
SMAD4-209ENST00000589941 POTEDQ86YR6 584 aa20.4■□□□□ 0.86
SMAD4-209ENST00000589941 NISCHQ9Y2I1 1504 aa20.37■□□□□ 0.85
SMAD4-209ENST00000589941 SLC4A1APQ9BWU0 796 aaKnown RBP20■□□□□ 0.79
SMAD4-209ENST00000589941 DNAJC5BQ9UF47 199 aa19.99■□□□□ 0.79
SMAD4-209ENST00000589941 DCAF8L1A6NGE4 600 aa19.94■□□□□ 0.78
SMAD4-209ENST00000589941 SLC4A2P04920 1241 aa19.55■□□□□ 0.72
SMAD4-209ENST00000589941 EHMT2Q96KQ7 1210 aa19.47■□□□□ 0.71
SMAD4-209ENST00000589941 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.43■□□□□ 0.73e-6■■□□□ 11.7
SMAD4-209ENST00000589941 ZBTB22O15209 634 aa19.42■□□□□ 0.7
SMAD4-209ENST00000589941 ABCC9O60706 1549 aa19.39■□□□□ 0.69
SMAD4-209ENST00000589941 FOXD4L1Q9NU39 408 aa19.31■□□□□ 0.68
SMAD4-209ENST00000589941 CSRNP3Q8WYN3 585 aa19.27■□□□□ 0.68
SMAD4-209ENST00000589941 U3KPZ7 1027 aaPredicted RBP19.18■□□□□ 0.66
SMAD4-209ENST00000589941 RNF39Q9H2S5 420 aa19.16■□□□□ 0.66
SMAD4-209ENST00000589941 MYCNP04198 464 aaPredicted RBP19.04■□□□□ 0.64
SMAD4-209ENST00000589941 C1QBPQ07021 282 aaKnown RBP18.87■□□□□ 0.61
SMAD4-209ENST00000589941 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.78■□□□□ 0.6
SMAD4-209ENST00000589941 HNRNPUL2Q1KMD3 747 aaKnown RBP18.78■□□□□ 0.6
SMAD4-209ENST00000589941 SAMD1Q6SPF0 538 aaPredicted RBP18.75■□□□□ 0.59
SMAD4-209ENST00000589941 CCDC180Q9P1Z9 1646 aa18.74■□□□□ 0.59
SMAD4-209ENST00000589941 SPINK5Q9NQ38 1064 aaPredicted RBP18.67■□□□□ 0.58
SMAD4-209ENST00000589941 CACNB1Q02641 598 aaPredicted RBP18.65■□□□□ 0.58
SMAD4-209ENST00000589941 ATF5Q9Y2D1 282 aaPredicted RBP18.65■□□□□ 0.58
SMAD4-209ENST00000589941 ATXN8OSP0DMR3 200 aa18.6■□□□□ 0.57
SMAD4-209ENST00000589941 APLP2Q06481 763 aa18.56■□□□□ 0.56
SMAD4-209ENST00000589941 CAPN15O75808 1086 aa18.53■□□□□ 0.56
SMAD4-209ENST00000589941 TRHP20396 242 aaPredicted RBP18.46■□□□□ 0.55
SMAD4-209ENST00000589941 ZNF219Q9P2Y4 722 aaPredicted RBP18.38■□□□□ 0.53
SMAD4-209ENST00000589941 DSG3P32926 999 aa18.24■□□□□ 0.51
SMAD4-209ENST00000589941 ABCB7O75027 752 aa18.23■□□□□ 0.51
SMAD4-209ENST00000589941 POLA2Q14181 598 aa18.16■□□□□ 0.5
SMAD4-209ENST00000589941 RB1CC1Q8TDY2 1594 aa18.08■□□□□ 0.49
SMAD4-209ENST00000589941 UNC13AQ9UPW8 1703 aa17.99■□□□□ 0.47
SMAD4-209ENST00000589941 MKRN4PQ13434 485 aaPredicted RBP17.82■□□□□ 0.44
SMAD4-209ENST00000589941 PABPN1Q86U42 306 aaKnown RBP eCLIP17.81■□□□□ 0.44
SMAD4-209ENST00000589941 ZBTB12Q9Y330 459 aaPredicted RBP17.75■□□□□ 0.43
SMAD4-209ENST00000589941 NACADO15069 1562 aa17.74■□□□□ 0.43
SMAD4-209ENST00000589941 BICRAQ9NZM4 1560 aa17.74■□□□□ 0.43
SMAD4-209ENST00000589941 FBLN2P98095 1184 aa17.72■□□□□ 0.43
SMAD4-209ENST00000589941 DNAJC5Q9H3Z4 198 aa17.68■□□□□ 0.42
SMAD4-209ENST00000589941 OSCARQ8IYS5 282 aa17.55■□□□□ 0.4
SMAD4-209ENST00000589941 CC2D2AQ9P2K1 1620 aa17.53■□□□□ 0.4
SMAD4-209ENST00000589941 CECR2Q9BXF3 1484 aa17.49■□□□□ 0.39
SMAD4-209ENST00000589941 FKBP8Q14318 412 aa17.39■□□□□ 0.37
SMAD4-209ENST00000589941 SPDYE4A6NLX3 237 aa17.35■□□□□ 0.37
SMAD4-209ENST00000589941 SPDYE2BA6NHP3 402 aa17.32■□□□□ 0.36
SMAD4-209ENST00000589941 SPDYE6P0CI01 402 aa17.32■□□□□ 0.36
SMAD4-209ENST00000589941 SPDYE2Q495Y8 402 aa17.32■□□□□ 0.36
SMAD4-209ENST00000589941 DCAF8L2P0C7V8 631 aa17.3■□□□□ 0.36
SMAD4-209ENST00000589941 EIF4G1Q04637 1599 aaKnown RBP17.28■□□□□ 0.36
SMAD4-209ENST00000589941 RBM42Q9BTD8 480 aaKnown RBP17.28■□□□□ 0.36
SMAD4-209ENST00000589941 ZNF692Q9BU19 519 aaPredicted RBP17.28■□□□□ 0.36
SMAD4-209ENST00000589941 SSUH2Q9Y2M2 353 aa17.23■□□□□ 0.35
SMAD4-209ENST00000589941 SHROOM4Q9ULL8 1493 aa17.21■□□□□ 0.35
SMAD4-209ENST00000589941 MYO15BQ96JP2 1530 aa17.21■□□□□ 0.34
SMAD4-209ENST00000589941 AKT1S1Q96B36 256 aa17.12■□□□□ 0.33
SMAD4-209ENST00000589941 PROM2Q8N271 834 aa17.08■□□□□ 0.32
SMAD4-209ENST00000589941 SCRIBQ14160 1630 aa17.05■□□□□ 0.32
SMAD4-209ENST00000589941 REM2Q8IYK8 340 aaPredicted RBP17■□□□□ 0.31
SMAD4-209ENST00000589941 CUX2O14529 1486 aa16.94■□□□□ 0.3
SMAD4-209ENST00000589941 PITPNM1O00562 1244 aa16.82■□□□□ 0.28
SMAD4-209ENST00000589941 SPDYE1Q8NFV5 336 aaPredicted RBP16.81■□□□□ 0.28
SMAD4-209ENST00000589941 CLEC11AQ9Y240 323 aa16.78■□□□□ 0.28
SMAD4-209ENST00000589941 ZCCHC6Q5VYS8 1495 aaKnown RBP16.78■□□□□ 0.28
SMAD4-209ENST00000589941 DCAF1Q9Y4B6 1507 aa16.74■□□□□ 0.27
SMAD4-209ENST00000589941 ERCC6Q03468 1493 aa16.71■□□□□ 0.27
SMAD4-209ENST00000589941 STAG3Q9UJ98 1225 aa16.7■□□□□ 0.26
SMAD4-209ENST00000589941 FBXO3Q9UK99 471 aa16.67■□□□□ 0.26
SMAD4-209ENST00000589941 CHRDL2Q6WN34 429 aa16.64■□□□□ 0.25
SMAD4-209ENST00000589941 TRIM41Q8WV44 630 aa16.64■□□□□ 0.25
SMAD4-209ENST00000589941 PRR29P0C7W0 189 aa16.6■□□□□ 0.25
SMAD4-209ENST00000589941 THOC2Q8NI27 1593 aaKnown RBP16.56■□□□□ 0.24
SMAD4-209ENST00000589941 VASPP50552 380 aaPredicted RBP16.52■□□□□ 0.24
SMAD4-209ENST00000589941 NESP48681 1621 aa16.49■□□□□ 0.23
SMAD4-209ENST00000589941 FXR2P51116 673 aaKnown RBP eCLIP16.48■□□□□ 0.23
SMAD4-209ENST00000589941 PIP4P2Q8N4L2 257 aa16.46■□□□□ 0.23
SMAD4-209ENST00000589941 CREBZFQ9NS37 354 aa16.45■□□□□ 0.22
SMAD4-209ENST00000589941 MIER1Q8N108 512 aa16.44■□□□□ 0.22
SMAD4-209ENST00000589941 CHADLQ6NUI6 762 aa16.42■□□□□ 0.22
SMAD4-209ENST00000589941 PLCD3Q8N3E9 789 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms