RNA–Protein interactions for RNA: YOR005C

DNL4, Transcript of DNA ligase required for nonhomologous end-joining (NHEJ), yeast

Gene DNL4, Length 2,835 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DNL4	YOR005C	DYS1	P38791	387 aa		3.21	□□□□□ -1.9
DNL4	YOR005C	SUM1	P46676	1062 aa		3.21	□□□□□ -1.9
DNL4	YOR005C	ITC1	P53125	1264 aa		3.21	□□□□□ -1.9
DNL4	YOR005C	CTR9	P89105	1077 aa		3.21	□□□□□ -1.9
DNL4	YOR005C	CAN1	P04817	590 aa		3.2	□□□□□ -1.9
DNL4	YOR005C	GAL11	P19659	1081 aa		3.2	□□□□□ -1.9
DNL4	YOR005C	MSH2	P25847	964 aa		3.2	□□□□□ -1.9
DNL4	YOR005C	GNP1	P48813	663 aa		3.2	□□□□□ -1.9
DNL4	YOR005C	YGR125W	P53273	1036 aa		3.2	□□□□□ -1.9
DNL4	YOR005C	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	3.2	□□□□□ -1.9	not detected
DNL4	YOR005C	SPO75	Q07798	868 aa		3.2	□□□□□ -1.9
DNL4	YOR005C	TMA46	Q12000	345 aa	Known RBP	3.2	□□□□□ -1.9
DNL4	YOR005C	YPK9	Q12697	1472 aa		3.2	□□□□□ -1.9
DNL4	YOR005C	SEC3	P33332	1336 aa	Known RBP	3.2	□□□□□ -1.9
DNL4	YOR005C	CIT1	P00890	479 aa		3.2	□□□□□ -1.9
DNL4	YOR005C	RPP2B	P02400	110 aa	Known RBP	3.2	□□□□□ -1.9
DNL4	YOR005C	RPL8A	P17076	256 aa	Known RBP	3.2	□□□□□ -1.9
DNL4	YOR005C	BAS1	P22035	811 aa		3.2	□□□□□ -1.9
DNL4	YOR005C	POL5	P39985	1022 aa	Known RBP	3.2	□□□□□ -1.9
DNL4	YOR005C	FIR1	P40020	876 aa		3.2	□□□□□ -1.9
DNL4	YOR005C	FOL1	P53848	824 aa		3.2	□□□□□ -1.9
DNL4	YOR005C	FMP25	Q08023	583 aa		3.2	□□□□□ -1.9
DNL4	YOR005C	COB	P00163	385 aa		3.2	□□□□□ -1.9
DNL4	YOR005C	RAD27	P26793	382 aa		3.2	□□□□□ -1.9
DNL4	YOR005C	UTP7	P40055	554 aa	Known RBP	3.2	□□□□□ -1.9
DNL4	YOR005C	QDR2	P40474	542 aa		3.2	□□□□□ -1.9
DNL4	YOR005C	YNL165W	P53891	406 aa		3.2	□□□□□ -1.9
DNL4	YOR005C	NTG2	Q08214	380 aa		3.2	□□□□□ -1.9
DNL4	YOR005C	Q0182	Q9ZZW1	134 aa		3.2	□□□□□ -1.9
DNL4	YOR005C	YOR1	P53049	1477 aa		3.2	□□□□□ -1.9
DNL4	YOR005C	ADR1	P07248	1323 aa		3.19	□□□□□ -1.9
DNL4	YOR005C	AGP1	P25376	633 aa		3.19	□□□□□ -1.9
DNL4	YOR005C	MRT4	P33201	236 aa	Known RBP	3.19	□□□□□ -1.9
DNL4	YOR005C	NUT1	P53114	1132 aa		3.19	□□□□□ -1.9
DNL4	YOR005C	PEX8	P53248	589 aa		3.19	□□□□□ -1.9
DNL4	YOR005C	KRE33	P53914	1056 aa	Known RBP	3.19	□□□□□ -1.9
DNL4	YOR005C	SYH1	Q02875	849 aa	Known RBP	3.19	□□□□□ -1.9
DNL4	YOR005C	MSH6	Q03834	1242 aa		3.19	□□□□□ -1.9
DNL4	YOR005C	SHE9	Q04172	456 aa		3.19	□□□□□ -1.9
DNL4	YOR005C	OSH2	Q12451	1283 aa		3.19	□□□□□ -1.9
DNL4	YOR005C	HSP60	P19882	572 aa	Known RBP	3.19	□□□□□ -1.9
DNL4	YOR005C	PWP2	P25635	923 aa	Known RBP	3.19	□□□□□ -1.9
DNL4	YOR005C	DUR3	P33413	735 aa		3.19	□□□□□ -1.9
DNL4	YOR005C	VPS24	P36095	224 aa	Known RBP	3.19	□□□□□ -1.9
DNL4	YOR005C	YBL086C	P38177	466 aa		3.19	□□□□□ -1.9
DNL4	YOR005C	DFG5	Q05031	458 aa		3.19	□□□□□ -1.9
DNL4	YOR005C	SCC2	Q04002	1493 aa		3.18	□□□□□ -1.9
DNL4	YOR005C	RAS1	P01119	309 aa		3.18	□□□□□ -1.9
DNL4	YOR005C	RVS167	P39743	482 aa	Known RBP	3.18	□□□□□ -1.9
DNL4	YOR005C	IRR1	P40541	1150 aa		3.18	□□□□□ -1.9
DNL4	YOR005C	PFD1	P46988	109 aa		3.18	□□□□□ -1.9
DNL4	YOR005C	YDL121C	Q07541	149 aa		3.18	□□□□□ -1.9
DNL4	YOR005C	STH1	P32597	1359 aa		3.18	□□□□□ -1.9
DNL4	YOR005C	SBA1	P28707	216 aa	Known RBP	3.18	□□□□□ -1.9
DNL4	YOR005C	MLF3	P32047	452 aa		3.18	□□□□□ -1.9
DNL4	YOR005C	MRP8	P35719	219 aa		3.18	□□□□□ -1.9
DNL4	YOR005C	MON1	P53129	644 aa		3.18	□□□□□ -1.9
DNL4	YOR005C	TAF8	Q03750	510 aa		3.18	□□□□□ -1.9
DNL4	YOR005C	PUS5	Q06244	254 aa		3.18	□□□□□ -1.9
DNL4	YOR005C	ESC2	Q06340	456 aa		3.18	□□□□□ -1.9
DNL4	YOR005C	KAR1	P11927	433 aa		3.17	□□□□□ -1.9
DNL4	YOR005C	VMA4	P22203	233 aa	Known RBP	3.17	□□□□□ -1.9
DNL4	YOR005C	ISW1	P38144	1129 aa		3.17	□□□□□ -1.9
DNL4	YOR005C	XKS1	P42826	600 aa		3.17	□□□□□ -1.9
DNL4	YOR005C	SAP155	P43612	1002 aa		3.17	□□□□□ -1.9
DNL4	YOR005C	RTA1	P53047	317 aa		3.17	□□□□□ -1.9
DNL4	YOR005C	ERP6	P53198	216 aa		3.17	□□□□□ -1.9
DNL4	YOR005C	UTP8	P53276	713 aa	Known RBP	3.17	□□□□□ -1.9
DNL4	YOR005C	CEF1	Q03654	590 aa	Predicted RBP	3.17	□□□□□ -1.9
DNL4	YOR005C	SAS4	Q04003	481 aa		3.17	□□□□□ -1.9
DNL4	YOR005C	MRL1	Q06815	381 aa		3.17	□□□□□ -1.9
DNL4	YOR005C	YOR378W	Q08902	515 aa		3.17	□□□□□ -1.9
DNL4	YOR005C	RPS31	P05759	152 aa	Known RBP	3.17	□□□□□ -1.9
DNL4	YOR005C	SBP1	P10080	294 aa	Known RBP	3.17	□□□□□ -1.9
DNL4	YOR005C	RPC31	P17890	251 aa		3.17	□□□□□ -1.9
DNL4	YOR005C	NAB2	P32505	525 aa	Known RBP RIP-Chip data	3.17	□□□□□ -1.9	RIP-Chip
DNL4	YOR005C	KAP122	P32767	1081 aa		3.17	□□□□□ -1.9
DNL4	YOR005C	VBA5	P36172	582 aa		3.17	□□□□□ -1.9
DNL4	YOR005C	SEA4	P38164	1038 aa		3.17	□□□□□ -1.9
DNL4	YOR005C	GIP1	P38229	639 aa		3.17	□□□□□ -1.9
DNL4	YOR005C	YBR287W	P38355	427 aa		3.17	□□□□□ -1.9
DNL4	YOR005C	HXT13	P39924	564 aa		3.17	□□□□□ -1.9
DNL4	YOR005C	BOI2	P39969	1040 aa		3.17	□□□□□ -1.9
DNL4	YOR005C	HXT17	P53631	564 aa		3.17	□□□□□ -1.9
DNL4	YOR005C	HXT15	P54854	567 aa		3.17	□□□□□ -1.9
DNL4	YOR005C	UGO1	Q03327	502 aa		3.17	□□□□□ -1.9
DNL4	YOR005C	ECM16	Q04217	1267 aa	Known RBP	3.17	□□□□□ -1.9
DNL4	YOR005C	YOR296W	Q08748	1289 aa		3.17	□□□□□ -1.9
DNL4	YOR005C	TAF13	P11747	167 aa		3.16	□□□□□ -1.9
DNL4	YOR005C	SEC23	P15303	768 aa	Known RBP	3.16	□□□□□ -1.9
DNL4	YOR005C	CDC11	P32458	415 aa		3.16	□□□□□ -1.9
DNL4	YOR005C	FUI1	P38196	639 aa		3.16	□□□□□ -1.9
DNL4	YOR005C	BSD2	P38356	321 aa		3.16	□□□□□ -1.9
DNL4	YOR005C	KRI1	P42846	591 aa	Known RBP	3.16	□□□□□ -1.9
DNL4	YOR005C	EAF1	Q06337	982 aa		3.16	□□□□□ -1.9
DNL4	YOR005C	ATG13	Q06628	738 aa		3.16	□□□□□ -1.9
DNL4	YOR005C	SSM4	P40318	1319 aa		3.16	□□□□□ -1.9
DNL4	YOR005C	TRP2	P00899	507 aa	Known RBP	3.16	□□□□□ -1.9
DNL4	YOR005C	PUF4	P25339	888 aa	Known RBP RIP-Chip data	3.16	□□□□□ -1.9	not detected
DNL4	YOR005C	SFP1	P32432	683 aa		3.16	□□□□□ -1.9

Retrieved 100 of 5,963 RNA–protein pairs in 50.7 ms