RNA–Protein interactions for RNA: ENST00000505005.5

NR1I3-220, Transcript of nuclear receptor subfamily 1 group I member 3, humanhuman

TSL 1 (best) BASIC

Gene NR1I3, Length 985 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NR1I3-220ENST00000505005 CSB-PGBD3P0DP91 1061 aa13.47□□□□□ -0.25
NR1I3-220ENST00000505005 AMPHP49418 695 aa13.47□□□□□ -0.25
NR1I3-220ENST00000505005 CHRNA2Q15822 529 aa13.47□□□□□ -0.25
NR1I3-220ENST00000505005 TCP11L2Q8N4U5 519 aa13.47□□□□□ -0.25
NR1I3-220ENST00000505005 PANK3Q9H999 370 aa13.47□□□□□ -0.25
NR1I3-220ENST00000505005 STRN4Q9NRL3 753 aa13.47□□□□□ -0.25
NR1I3-220ENST00000505005 RTL1A6NKG5 1358 aa13.46□□□□□ -0.25
NR1I3-220ENST00000505005 SPATA31A1Q5TZJ5 1347 aa13.46□□□□□ -0.25
NR1I3-220ENST00000505005 WDR17Q8IZU2 1322 aa13.46□□□□□ -0.25
NR1I3-220ENST00000505005 ZBTB7CA1YPR0 619 aa13.46□□□□□ -0.25
NR1I3-220ENST00000505005 TOM1L2Q6ZVM7 507 aa13.46□□□□□ -0.25
NR1I3-220ENST00000505005 IP6K1Q92551 441 aa13.46□□□□□ -0.25
NR1I3-220ENST00000505005 CRB1P82279 1406 aa13.46□□□□□ -0.26
NR1I3-220ENST00000505005 NSD3Q9BZ95 1437 aa13.46□□□□□ -0.26
NR1I3-220ENST00000505005 CCDC7Q96M83 1385 aa13.45□□□□□ -0.26
NR1I3-220ENST00000505005 WASHC2AQ641Q2 1341 aa13.45□□□□□ -0.26
NR1I3-220ENST00000505005 A0A0G2JS52 829 aa13.45□□□□□ -0.26
NR1I3-220ENST00000505005 MYT1Q01538 1121 aa13.45□□□□□ -0.26
NR1I3-220ENST00000505005 SMG6Q86US8 1419 aaKnown RBP13.45□□□□□ -0.26
NR1I3-220ENST00000505005 KIF7Q2M1P5 1343 aa13.44□□□□□ -0.26
NR1I3-220ENST00000505005 CARD10Q9BWT7 1032 aa13.44□□□□□ -0.26
NR1I3-220ENST00000505005 NRAPQ86VF7 1730 aa13.44□□□□□ -0.26
NR1I3-220ENST00000505005 KIF20BQ96Q89 1820 aa13.43□□□□□ -0.26
NR1I3-220ENST00000505005 COL5A2P05997 1499 aaPredicted RBP13.43□□□□□ -0.26
NR1I3-220ENST00000505005 SOX12O15370 315 aa13.43□□□□□ -0.26
NR1I3-220ENST00000505005 PDE3BQ13370 1112 aa13.43□□□□□ -0.26
NR1I3-220ENST00000505005 SEPT12Q8IYM1 358 aa13.43□□□□□ -0.26
NR1I3-220ENST00000505005 CARD14Q9BXL6 1004 aa13.43□□□□□ -0.26
NR1I3-220ENST00000505005 GGNBP2Q9H3C7 697 aa13.43□□□□□ -0.26
NR1I3-220ENST00000505005 MYOM1P52179 1685 aa13.43□□□□□ -0.26
NR1I3-220ENST00000505005 LMO7Q8WWI1 1683 aa13.43□□□□□ -0.26
NR1I3-220ENST00000505005 NFAT5O94916 1531 aa13.43□□□□□ -0.26
NR1I3-220ENST00000505005 SF3B2Q13435 895 aaKnown RBP13.42□□□□□ -0.26
NR1I3-220ENST00000505005 KRT27Q7Z3Y8 459 aa13.42□□□□□ -0.26
NR1I3-220ENST00000505005 CAMTA1Q9Y6Y1 1673 aa13.42□□□□□ -0.26
NR1I3-220ENST00000505005 FAM98CQ17RN3 349 aaKnown RBP13.41□□□□□ -0.26
NR1I3-220ENST00000505005 MORC1Q86VD1 984 aa13.41□□□□□ -0.26
NR1I3-220ENST00000505005 FLT4P35916 1363 aa13.41□□□□□ -0.26
NR1I3-220ENST00000505005 NPC1L1Q9UHC9 1359 aa13.41□□□□□ -0.26
NR1I3-220ENST00000505005 ERBB3P21860 1342 aa13.4□□□□□ -0.26
NR1I3-220ENST00000505005 RGS12O14924 1447 aa13.4□□□□□ -0.26
NR1I3-220ENST00000505005 HMGB2P26583 209 aaKnown RBP13.4□□□□□ -0.26
NR1I3-220ENST00000505005 LARP1Q6PKG0 1096 aaKnown RBP13.4□□□□□ -0.26
NR1I3-220ENST00000505005 FAM208AQ9UK61 1670 aaKnown RBP13.4□□□□□ -0.26
NR1I3-220ENST00000505005 EXOC5O00471 708 aa13.39□□□□□ -0.27
NR1I3-220ENST00000505005 HOXC9P31274 260 aa13.39□□□□□ -0.27
NR1I3-220ENST00000505005 FAM196AQ6ZSG2 479 aa13.39□□□□□ -0.27
NR1I3-220ENST00000505005 ANKRD24Q8TF21 1146 aa13.39□□□□□ -0.27
NR1I3-220ENST00000505005 ZRANB1Q9UGI0 708 aa13.39□□□□□ -0.27
NR1I3-220ENST00000505005 GLI3P10071 1580 aa13.39□□□□□ -0.27
NR1I3-220ENST00000505005 LTN1O94822 1766 aa13.39□□□□□ -0.27
NR1I3-220ENST00000505005 COL18A1P39060 1754 aa13.39□□□□□ -0.27
NR1I3-220ENST00000505005 MAP3K19Q56UN5 1328 aa13.39□□□□□ -0.27
NR1I3-220ENST00000505005 INSRP06213 1382 aa13.38□□□□□ -0.27
NR1I3-220ENST00000505005 DDB1Q16531 1140 aa13.38□□□□□ -0.27
NR1I3-220ENST00000505005 NLRP2Q9NX02 1062 aa13.38□□□□□ -0.27
NR1I3-220ENST00000505005 USP35Q9P2H5 1018 aa13.38□□□□□ -0.27
NR1I3-220ENST00000505005 AXIN2Q9Y2T1 843 aa13.38□□□□□ -0.27
NR1I3-220ENST00000505005 PLEKHG2Q9H7P9 1386 aa13.37□□□□□ -0.27
NR1I3-220ENST00000505005 ANKRD26Q9UPS8 1709 aa13.37□□□□□ -0.27
NR1I3-220ENST00000505005 IL2RBP14784 551 aa13.36□□□□□ -0.27
NR1I3-220ENST00000505005 PER1O15534 1290 aaPredicted RBP13.35□□□□□ -0.27
NR1I3-220ENST00000505005 UPF1Q92900 1129 aaKnown RBP eCLIP13.35□□□□□ -0.27
NR1I3-220ENST00000505005 RAPGEF4Q8WZA2 1011 aa13.34□□□□□ -0.27
NR1I3-220ENST00000505005 MAP2P11137 1827 aaKnown RBP13.34□□□□□ -0.27
NR1I3-220ENST00000505005 PPM1GO15355 546 aaPredicted RBP13.33□□□□□ -0.28
NR1I3-220ENST00000505005 RRS1Q15050 365 aaKnown RBP13.33□□□□□ -0.28
NR1I3-220ENST00000505005 AMER1Q5JTC6 1135 aaPredicted RBP13.33□□□□□ -0.28
NR1I3-220ENST00000505005 THSD7AQ9UPZ6 1657 aa13.33□□□□□ -0.28
NR1I3-220ENST00000505005 RGPD5Q99666 1765 aa13.32□□□□□ -0.28
NR1I3-220ENST00000505005 BAG6P46379 1132 aa13.32□□□□□ -0.28
NR1I3-220ENST00000505005 POLKQ9UBT6 870 aa13.32□□□□□ -0.28
NR1I3-220ENST00000505005 PARP4Q9UKK3 1724 aaKnown RBP13.32□□□□□ -0.28
NR1I3-220ENST00000505005 OVOS2A0A0G2JMS6 1433 aa13.31□□□□□ -0.28
NR1I3-220ENST00000505005 TATP17735 454 aaPredicted RBP13.31□□□□□ -0.28
NR1I3-220ENST00000505005 CFAP53Q96M91 514 aa13.31□□□□□ -0.28
NR1I3-220ENST00000505005 BCL9O00512 1426 aa13.3□□□□□ -0.28
NR1I3-220ENST00000505005 MAPK8IP2Q13387 824 aaPredicted RBP13.3□□□□□ -0.28
NR1I3-220ENST00000505005 LTV1Q96GA3 475 aaPredicted RBP13.3□□□□□ -0.28
NR1I3-220ENST00000505005 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.3□□□□□ -0.28
NR1I3-220ENST00000505005 HSP90AB2PQ58FF8 381 aa13.29□□□□□ -0.28
NR1I3-220ENST00000505005 BRWD3Q6RI45 1802 aa13.29□□□□□ -0.28
NR1I3-220ENST00000505005 PARD3Q8TEW0 1356 aa13.29□□□□□ -0.28
NR1I3-220ENST00000505005 TNNT2P45379 298 aaPredicted RBP13.28□□□□□ -0.28
NR1I3-220ENST00000505005 ZCRB1Q8TBF4 217 aaKnown RBP13.28□□□□□ -0.28
NR1I3-220ENST00000505005 SPG7Q9UQ90 795 aa13.28□□□□□ -0.28
NR1I3-220ENST00000505005 NUDCQ9Y266 331 aa13.28□□□□□ -0.28
NR1I3-220ENST00000505005 EMILIN1Q9Y6C2 1016 aa13.28□□□□□ -0.28
NR1I3-220ENST00000505005 DISP2A7MBM2 1401 aa13.27□□□□□ -0.29
NR1I3-220ENST00000505005 RALBP1Q15311 655 aa13.26□□□□□ -0.29
NR1I3-220ENST00000505005 AMOTQ4VCS5 1084 aa13.26□□□□□ -0.29
NR1I3-220ENST00000505005 CC2D1BQ5T0F9 858 aaKnown RBP13.26□□□□□ -0.29
NR1I3-220ENST00000505005 NBPF6Q5VWK0 638 aa13.26□□□□□ -0.29
NR1I3-220ENST00000505005 TNS2Q63HR2 1409 aa13.26□□□□□ -0.29
NR1I3-220ENST00000505005 NBPF4Q96M43 638 aa13.26□□□□□ -0.29
NR1I3-220ENST00000505005 WNK3Q9BYP7 1800 aa13.25□□□□□ -0.29
NR1I3-220ENST00000505005 RGPD1P0DJD0 1748 aa13.25□□□□□ -0.29
NR1I3-220ENST00000505005 PCDH11XQ9BZA7 1347 aa13.25□□□□□ -0.29
NR1I3-220ENST00000505005 PCDH11YQ9BZA8 1340 aa13.25□□□□□ -0.29
NR1I3-220ENST00000505005 HSP90AB1P08238 724 aaKnown RBP13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms