RNA–Protein interactions for RNA: ENST00000475639.5

U2AF1-209, Transcript of U2 small nuclear RNA auxiliary factor 1, humanhuman

TSL 1 (best)

Gene U2AF1, Length 4,694 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1-209ENST00000475639 FANCD2Q9BXW9 1451 aa13.82□□□□□ -0.2
U2AF1-209ENST00000475639 SPDYE4A6NLX3 237 aa13.82□□□□□ -0.2
U2AF1-209ENST00000475639 CPLX1O14810 134 aa13.82□□□□□ -0.2
U2AF1-209ENST00000475639 ZKSCAN1P17029 563 aaPredicted RBP13.82□□□□□ -0.2
U2AF1-209ENST00000475639 MVPQ14764 893 aaKnown RBP13.82□□□□□ -0.2
U2AF1-209ENST00000475639 DIAPH3Q9NSV4 1193 aa13.82□□□□□ -0.2
U2AF1-209ENST00000475639 RBM27Q9P2N5 1060 aaKnown RBP13.82□□□□□ -0.2
U2AF1-209ENST00000475639 KANK1Q14678 1352 aa13.82□□□□□ -0.2
U2AF1-209ENST00000475639 FOXD4L6Q3SYB3 417 aaPredicted RBP13.81□□□□□ -0.2
U2AF1-209ENST00000475639 FOXD4L3Q6VB84 417 aaPredicted RBP13.81□□□□□ -0.2
U2AF1-209ENST00000475639 PRIMPOLQ96LW4 560 aa13.81□□□□□ -0.2
U2AF1-209ENST00000475639 CTDP1Q9Y5B0 961 aaPredicted RBP13.81□□□□□ -0.2
U2AF1-209ENST00000475639 BICD2Q8TD16 824 aa13.81□□□□□ -0.2
U2AF1-209ENST00000475639 ERCC4Q92889 916 aaPredicted RBP13.81□□□□□ -0.2
U2AF1-209ENST00000475639 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.81□□□□□ -0.2
U2AF1-209ENST00000475639 ASXL1Q8IXJ9 1541 aa13.81□□□□□ -0.2
U2AF1-209ENST00000475639 NAP1L1P55209 391 aaKnown RBP13.81□□□□□ -0.2
U2AF1-209ENST00000475639 CGNQ9P2M7 1197 aaKnown RBP13.81□□□□□ -0.2
U2AF1-209ENST00000475639 CCDC66A2RUB6 948 aa13.8□□□□□ -0.2
U2AF1-209ENST00000475639 NGEFQ8N5V2 710 aa13.8□□□□□ -0.2
U2AF1-209ENST00000475639 CCDC43Q96MW1 224 aaKnown RBP13.8□□□□□ -0.2
U2AF1-209ENST00000475639 HMGN5P82970 282 aaKnown RBP13.8□□□□□ -0.2
U2AF1-209ENST00000475639 PLCD3Q8N3E9 789 aa13.8□□□□□ -0.2
U2AF1-209ENST00000475639 GPT2Q8TD30 523 aa13.8□□□□□ -0.2
U2AF1-209ENST00000475639 RUFY2Q8WXA3 655 aa13.8□□□□□ -0.2
U2AF1-209ENST00000475639 AMOTL1Q8IY63 956 aa13.8□□□□□ -0.2
U2AF1-209ENST00000475639 A2MP01023 1474 aa13.8□□□□□ -0.2
U2AF1-209ENST00000475639 RILPL2Q969X0 211 aa13.79□□□□□ -0.2
U2AF1-209ENST00000475639 TAF3Q5VWG9 929 aa13.79□□□□□ -0.2
U2AF1-209ENST00000475639 STK26Q9P289 416 aa13.79□□□□□ -0.2
U2AF1-209ENST00000475639 CCDC9Q9Y3X0 531 aaKnown RBP13.79□□□□□ -0.2
U2AF1-209ENST00000475639 ZRSR2Q15696 482 aaKnown RBP13.79□□□□□ -0.2
U2AF1-209ENST00000475639 TDRD9Q8NDG6 1382 aaKnown RBP13.79□□□□□ -0.2
U2AF1-209ENST00000475639 GRIN2AQ12879 1464 aa13.79□□□□□ -0.2
U2AF1-209ENST00000475639 HDAC1Q13547 482 aaPredicted RBP13.79□□□□□ -0.2
U2AF1-209ENST00000475639 TSPYL1Q9H0U9 437 aa13.79□□□□□ -0.2
U2AF1-209ENST00000475639 LRSAM1Q6UWE0 723 aa13.78□□□□□ -0.2
U2AF1-209ENST00000475639 PTPRGP23470 1445 aa13.78□□□□□ -0.2
U2AF1-209ENST00000475639 PKP1Q13835 747 aa13.78□□□□□ -0.2
U2AF1-209ENST00000475639 BCL2L12Q9HB09 334 aa13.78□□□□□ -0.2
U2AF1-209ENST00000475639 REC8O95072 547 aa13.78□□□□□ -0.2
U2AF1-209ENST00000475639 MYO6Q9UM54 1294 aa13.78□□□□□ -0.2
U2AF1-209ENST00000475639 SYCE3A1L190 88 aa13.78□□□□□ -0.2
U2AF1-209ENST00000475639 NEXNQ0ZGT2 675 aa13.78□□□□□ -0.2
U2AF1-209ENST00000475639 ZFYVE27Q5T4F4 411 aa13.78□□□□□ -0.2
U2AF1-209ENST00000475639 NOL10Q9BSC4 688 aaKnown RBP13.78□□□□□ -0.2
U2AF1-209ENST00000475639 TMEM63CQ9P1W3 806 aa13.78□□□□□ -0.2
U2AF1-209ENST00000475639 CYP2E1P05181 493 aaPredicted RBP13.77□□□□□ -0.2
U2AF1-209ENST00000475639 ADCY10Q96PN6 1610 aa13.77□□□□□ -0.21
U2AF1-209ENST00000475639 IFT57Q9NWB7 429 aa13.77□□□□□ -0.21
U2AF1-209ENST00000475639 RNF214Q8ND24 703 aa13.77□□□□□ -0.21
U2AF1-209ENST00000475639 PAF1Q8N7H5 531 aa13.76□□□□□ -0.21
U2AF1-209ENST00000475639 DHX16O60231 1041 aaKnown RBP13.76□□□□□ -0.21
U2AF1-209ENST00000475639 TRDNQ13061 729 aa13.76□□□□□ -0.21
U2AF1-209ENST00000475639 PRPF40AO75400 957 aaKnown RBP13.76□□□□□ -0.21
U2AF1-209ENST00000475639 U2AF2P26368 475 aaKnown RBP eCLIP13.76□□□□□ -0.21
U2AF1-209ENST00000475639 CCDC73Q6ZRK6 1079 aa13.76□□□□□ -0.21
U2AF1-209ENST00000475639 PDCL2Q8N4E4 241 aa13.76□□□□□ -0.21
U2AF1-209ENST00000475639 SYNMO15061 1565 aa13.76□□□□□ -0.21
U2AF1-209ENST00000475639 PLCD4Q9BRC7 762 aa13.76□□□□□ -0.21
U2AF1-209ENST00000475639 RRP7AQ9Y3A4 280 aaKnown RBP13.76□□□□□ -0.21
U2AF1-209ENST00000475639 MLECQ14165 292 aa13.75□□□□□ -0.21
U2AF1-209ENST00000475639 PIBF1Q8WXW3 757 aa13.75□□□□□ -0.21
U2AF1-209ENST00000475639 TERF2IPQ9NYB0 399 aa13.75□□□□□ -0.21
U2AF1-209ENST00000475639 GPATCH8Q9UKJ3 1502 aaKnown RBP13.75□□□□□ -0.21
U2AF1-209ENST00000475639 NSFL1CQ9UNZ2 370 aaKnown RBP13.75□□□□□ -0.21
U2AF1-209ENST00000475639 AEBP2Q6ZN18 517 aaPredicted RBP13.75□□□□□ -0.21
U2AF1-209ENST00000475639 NOLC1Q14978 699 aaKnown RBP eCLIP13.75□□□□□ -0.21
U2AF1-209ENST00000475639 TRIM34Q9BYJ4 488 aa13.75□□□□□ -0.21
U2AF1-209ENST00000475639 DZIP1LQ8IYY4 767 aaKnown RBP13.74□□□□□ -0.21
U2AF1-209ENST00000475639 NPC1L1Q9UHC9 1359 aa13.74□□□□□ -0.21
U2AF1-209ENST00000475639 HSP90AB2PQ58FF8 381 aa13.74□□□□□ -0.21
U2AF1-209ENST00000475639 C17orf53Q8N3J3 647 aaPredicted RBP13.74□□□□□ -0.21
U2AF1-209ENST00000475639 MPNDQ8N594 471 aa13.74□□□□□ -0.21
U2AF1-209ENST00000475639 SAFBQ15424 915 aaKnown RBP eCLIP13.74□□□□□ -0.21
U2AF1-209ENST00000475639 NUP153P49790 1475 aaKnown RBP13.74□□□□□ -0.21
U2AF1-209ENST00000475639 RAD21O60216 631 aa13.73□□□□□ -0.21
U2AF1-209ENST00000475639 HSP90AB3PQ58FF7 597 aa13.73□□□□□ -0.21
U2AF1-209ENST00000475639 RNF20Q5VTR2 975 aa13.73□□□□□ -0.21
U2AF1-209ENST00000475639 NUCB2P80303 420 aa13.73□□□□□ -0.21
U2AF1-209ENST00000475639 ANKRD45Q5TZF3 282 aa13.73□□□□□ -0.21
U2AF1-209ENST00000475639 LNPKQ9C0E8 428 aa13.73□□□□□ -0.21
U2AF1-209ENST00000475639 MYO5CQ9NQX4 1742 aa13.73□□□□□ -0.21
U2AF1-209ENST00000475639 NEFHP12036 1026 aa13.73□□□□□ -0.21
U2AF1-209ENST00000475639 CHAMP1Q96JM3 812 aa13.73□□□□□ -0.21
U2AF1-209ENST00000475639 IQGAP2Q13576 1575 aa13.73□□□□□ -0.21
U2AF1-209ENST00000475639 GOLGA6L7A0A1B0GV03 622 aa13.73□□□□□ -0.21
U2AF1-209ENST00000475639 ZKSCAN2Q63HK3 967 aa13.73□□□□□ -0.21
U2AF1-209ENST00000475639 PRG4Q92954 1404 aaPredicted RBP13.73□□□□□ -0.21
U2AF1-209ENST00000475639 IRX5P78411 483 aaPredicted RBP13.72□□□□□ -0.21
U2AF1-209ENST00000475639 EIF2AK4Q9P2K8 1649 aaKnown RBP13.72□□□□□ -0.21
U2AF1-209ENST00000475639 NUCB1Q02818 461 aa13.72□□□□□ -0.21
U2AF1-209ENST00000475639 BMP2KLQ5H9B9 411 aa13.72□□□□□ -0.21
U2AF1-209ENST00000475639 MYOM1P52179 1685 aa13.72□□□□□ -0.21
U2AF1-209ENST00000475639 PAXIP1Q6ZW49 1069 aaPredicted RBP13.72□□□□□ -0.21
U2AF1-209ENST00000475639 PHF23Q9BUL5 403 aaPredicted RBP13.72□□□□□ -0.21
U2AF1-209ENST00000475639 AMPHP49418 695 aa13.71□□□□□ -0.21
U2AF1-209ENST00000475639 FKBP5Q13451 457 aaPredicted RBP13.71□□□□□ -0.21
U2AF1-209ENST00000475639 ANKRD7Q92527 254 aa13.71□□□□□ -0.21
U2AF1-209ENST00000475639 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 101.4 ms