RNA–Protein interactions for RNA: ENSMUST00000052648.8

Ccdc28a-201, Transcript of Coiled-coil domain-containing 28A, mousemouse

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Gene Ccdc28a, Length 2,255 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28a-201ENSMUST00000052648 Nhsl1Q8CAF4 1587 aa11.78□□□□□ -0.52
Ccdc28a-201ENSMUST00000052648 Zfp777B9EKF4 885 aa11.78□□□□□ -0.52
Ccdc28a-201ENSMUST00000052648 Ddx54Q8K4L0 874 aaKnown RBP11.78□□□□□ -0.52
Ccdc28a-201ENSMUST00000052648 PalmQ9Z0P4 383 aa11.78□□□□□ -0.52
Ccdc28a-201ENSMUST00000052648 Esx1O88933 382 aa11.77□□□□□ -0.52
Ccdc28a-201ENSMUST00000052648 Ecm2Q5FW85 670 aa11.77□□□□□ -0.52
Ccdc28a-201ENSMUST00000052648 Kat6bQ8BRB7 1872 aa11.77□□□□□ -0.52
Ccdc28a-201ENSMUST00000052648 Stra8P70278 393 aa11.77□□□□□ -0.53
Ccdc28a-201ENSMUST00000052648 Kdm6aO70546 1401 aa11.77□□□□□ -0.53
Ccdc28a-201ENSMUST00000052648 Ggt6Q6PDE7 497 aa11.76□□□□□ -0.53
Ccdc28a-201ENSMUST00000052648 Slx1bQ8BX32 270 aa11.76□□□□□ -0.53
Ccdc28a-201ENSMUST00000052648 Golga2Q921M4 999 aa11.76□□□□□ -0.53
Ccdc28a-201ENSMUST00000052648 Eya1P97767 591 aa11.75□□□□□ -0.53
Ccdc28a-201ENSMUST00000052648 Map4k4P97820 1233 aaKnown RBP11.75□□□□□ -0.53
Ccdc28a-201ENSMUST00000052648 Rtl5Q5DTT4 599 aa11.75□□□□□ -0.53
Ccdc28a-201ENSMUST00000052648 Nyap1Q6PFX7 833 aa11.75□□□□□ -0.53
Ccdc28a-201ENSMUST00000052648 Pard3Q99NH2 1333 aa11.75□□□□□ -0.53
Ccdc28a-201ENSMUST00000052648 MpripP97434 1024 aa11.75□□□□□ -0.53
Ccdc28a-201ENSMUST00000052648 Fchsd2Q3USJ8 740 aa11.75□□□□□ -0.53
Ccdc28a-201ENSMUST00000052648 Mak16Q8BGS0 296 aaKnown RBP11.75□□□□□ -0.53
Ccdc28a-201ENSMUST00000052648 Akap11E9Q777 1895 aa11.75□□□□□ -0.53
Ccdc28a-201ENSMUST00000052648 Slit1Q80TR4 1531 aa11.74□□□□□ -0.53
Ccdc28a-201ENSMUST00000052648 OptnQ8K3K8 584 aa11.74□□□□□ -0.53
Ccdc28a-201ENSMUST00000052648 Cntnap1O54991 1385 aa11.74□□□□□ -0.53
Ccdc28a-201ENSMUST00000052648 Znf541Q0GGX2 1363 aa11.74□□□□□ -0.53
Ccdc28a-201ENSMUST00000052648 Usp19Q3UJD6 1360 aa11.74□□□□□ -0.53
Ccdc28a-201ENSMUST00000052648 CrklP47941 303 aa11.74□□□□□ -0.53
Ccdc28a-201ENSMUST00000052648 TkfcQ8VC30 578 aa11.74□□□□□ -0.53
Ccdc28a-201ENSMUST00000052648 Arfgef2A2A5R2 1792 aa11.73□□□□□ -0.53
Ccdc28a-201ENSMUST00000052648 Sema6bO54951 886 aa11.72□□□□□ -0.53
Ccdc28a-201ENSMUST00000052648 Tcerg1Q8CGF7 1100 aaKnown RBP11.72□□□□□ -0.53
Ccdc28a-201ENSMUST00000052648 Col15a1O35206 1367 aa11.72□□□□□ -0.53
Ccdc28a-201ENSMUST00000052648 RgmbQ7TQ33 436 aa11.72□□□□□ -0.53
Ccdc28a-201ENSMUST00000052648 Mapk8ip3Q9ESN9 1337 aa11.72□□□□□ -0.53
Ccdc28a-201ENSMUST00000052648 Lrp6O88572 1613 aa11.71□□□□□ -0.53
Ccdc28a-201ENSMUST00000052648 TnikP83510 1323 aa11.71□□□□□ -0.53
Ccdc28a-201ENSMUST00000052648 Simc1E9Q6E9 1354 aa11.71□□□□□ -0.54
Ccdc28a-201ENSMUST00000052648 Apaf1O88879 1249 aa11.71□□□□□ -0.54
Ccdc28a-201ENSMUST00000052648 Mcm10Q0VBD2 885 aa11.71□□□□□ -0.54
Ccdc28a-201ENSMUST00000052648 Emilin2Q8K482 1074 aa11.71□□□□□ -0.54
Ccdc28a-201ENSMUST00000052648 Fer1l6E0CZ42 1862 aa11.71□□□□□ -0.54
Ccdc28a-201ENSMUST00000052648 Cacna1sQ02789 1880 aa11.7□□□□□ -0.54
Ccdc28a-201ENSMUST00000052648 Trpm3Q5F4S9 1721 aa11.7□□□□□ -0.54
Ccdc28a-201ENSMUST00000052648 Uspl1Q3ULM6 1089 aa11.7□□□□□ -0.54
Ccdc28a-201ENSMUST00000052648 Ahnak2E9PYB0 1738 aaKnown RBP11.7□□□□□ -0.54
Ccdc28a-201ENSMUST00000052648 Plekhd1B2RPU2 505 aa11.7□□□□□ -0.54
Ccdc28a-201ENSMUST00000052648 Q4VA45 678 aa11.7□□□□□ -0.54
Ccdc28a-201ENSMUST00000052648 Stk31Q99MW1 1018 aa11.7□□□□□ -0.54
Ccdc28a-201ENSMUST00000052648 Shank2Q80Z38 1476 aa11.69□□□□□ -0.54
Ccdc28a-201ENSMUST00000052648 Tnks1bp1P58871 1720 aa11.69□□□□□ -0.54
Ccdc28a-201ENSMUST00000052648 Plin1Q8CGN5 517 aa11.69□□□□□ -0.54
Ccdc28a-201ENSMUST00000052648 MypopQ8R4U1 393 aa11.69□□□□□ -0.54
Ccdc28a-201ENSMUST00000052648 Zeb2Q9R0G7 1215 aa11.69□□□□□ -0.54
Ccdc28a-201ENSMUST00000052648 Tnrc6cQ3UHC0 1690 aaKnown RBP11.69□□□□□ -0.54
Ccdc28a-201ENSMUST00000052648 Gm10471E9Q1C7 252 aa11.69□□□□□ -0.54
Ccdc28a-201ENSMUST00000052648 Ppp1r37Q8BKR5 712 aa11.69□□□□□ -0.54
Ccdc28a-201ENSMUST00000052648 Iqcf3Q9D498 203 aa11.69□□□□□ -0.54
Ccdc28a-201ENSMUST00000052648 Cavin4A2AMM0 362 aa11.67□□□□□ -0.54
Ccdc28a-201ENSMUST00000052648 Gsdma3Q5Y4Y6 464 aa11.67□□□□□ -0.54
Ccdc28a-201ENSMUST00000052648 Pak3Q61036 559 aa11.67□□□□□ -0.54
Ccdc28a-201ENSMUST00000052648 Zranb3Q6NZP1 1069 aa11.67□□□□□ -0.54
Ccdc28a-201ENSMUST00000052648 Fnbp4Q6ZQ03 1031 aa11.67□□□□□ -0.54
Ccdc28a-201ENSMUST00000052648 CrbnQ8C7D2 445 aa11.67□□□□□ -0.54
Ccdc28a-201ENSMUST00000052648 Rab11fip3Q8CHD8 1047 aa11.67□□□□□ -0.54
Ccdc28a-201ENSMUST00000052648 Ciz1Q8VEH2 845 aa11.67□□□□□ -0.54
Ccdc28a-201ENSMUST00000052648 HypkQ9CR41 129 aa11.67□□□□□ -0.54
Ccdc28a-201ENSMUST00000052648 Mast2Q60592 1734 aa11.67□□□□□ -0.54
Ccdc28a-201ENSMUST00000052648 Adgrb1Q3UHD1 1582 aa11.67□□□□□ -0.54
Ccdc28a-201ENSMUST00000052648 Uhrf1bp1B2KF50 1429 aa11.67□□□□□ -0.54
Ccdc28a-201ENSMUST00000052648 Zpr1Q62384 459 aa11.66□□□□□ -0.54
Ccdc28a-201ENSMUST00000052648 Ncbp3Q8BZR9 615 aaKnown RBP11.66□□□□□ -0.54
Ccdc28a-201ENSMUST00000052648 Cabp2Q9JLK4 216 aa11.66□□□□□ -0.54
Ccdc28a-201ENSMUST00000052648 Aplp2Q06335 707 aa11.65□□□□□ -0.54
Ccdc28a-201ENSMUST00000052648 Psrc1Q9D0P7 329 aa11.65□□□□□ -0.54
Ccdc28a-201ENSMUST00000052648 InhbeO08717 350 aa11.65□□□□□ -0.55
Ccdc28a-201ENSMUST00000052648 Dusp27Q148W8 1138 aa11.65□□□□□ -0.55
Ccdc28a-201ENSMUST00000052648 TmpoQ61033 693 aaKnown RBP11.65□□□□□ -0.55
Ccdc28a-201ENSMUST00000052648 Cypt2Q6P924 180 aa11.65□□□□□ -0.55
Ccdc28a-201ENSMUST00000052648 Ofd1Q80Z25 1017 aa11.65□□□□□ -0.55
Ccdc28a-201ENSMUST00000052648 Myo5bP21271 1818 aa11.64□□□□□ -0.55
Ccdc28a-201ENSMUST00000052648 Rad21Q61550 635 aaKnown RBP11.64□□□□□ -0.55
Ccdc28a-201ENSMUST00000052648 Amotl1Q9D4H4 968 aa11.64□□□□□ -0.55
Ccdc28a-201ENSMUST00000052648 Speer4f1Q9D5Q6 258 aa11.64□□□□□ -0.55
Ccdc28a-201ENSMUST00000052648 Larp1bA0A0A6YXJ7 370 aaKnown RBP11.63□□□□□ -0.55
Ccdc28a-201ENSMUST00000052648 Ccdc129Q14B48 1034 aa11.63□□□□□ -0.55
Ccdc28a-201ENSMUST00000052648 Zfp444Q3TDV8 331 aaKnown RBP11.63□□□□□ -0.55
Ccdc28a-201ENSMUST00000052648 Ralbp1Q62172 648 aa11.63□□□□□ -0.55
Ccdc28a-201ENSMUST00000052648 ThemisQ8BGW0 636 aa11.63□□□□□ -0.55
Ccdc28a-201ENSMUST00000052648 Cc2d1aQ8K1A6 943 aa11.63□□□□□ -0.55
Ccdc28a-201ENSMUST00000052648 Swt1Q9DBQ9 907 aa11.63□□□□□ -0.55
Ccdc28a-201ENSMUST00000052648 Eno4Q8C042 619 aa11.62□□□□□ -0.55
Ccdc28a-201ENSMUST00000052648 Pm20d1Q8C165 503 aa11.62□□□□□ -0.55
Ccdc28a-201ENSMUST00000052648 Nwd2Q6P5U7 1742 aa11.62□□□□□ -0.55
Ccdc28a-201ENSMUST00000052648 Sf3b2Q3UJB0 878 aaKnown RBP11.62□□□□□ -0.55
Ccdc28a-201ENSMUST00000052648 Nup153E9Q3G8 1462 aaKnown RBP11.62□□□□□ -0.55
Ccdc28a-201ENSMUST00000052648 4930572O03RikQ8C5Y0 211 aa11.61□□□□□ -0.55
Ccdc28a-201ENSMUST00000052648 Tns2Q8CGB6 1400 aa11.61□□□□□ -0.55
Ccdc28a-201ENSMUST00000052648 Ltbp1Q8CG19 1712 aa11.61□□□□□ -0.55
Ccdc28a-201ENSMUST00000052648 Fam50bQ9WTJ8 334 aa11.61□□□□□ -0.55
Ccdc28a-201ENSMUST00000052648 Neurod2Q62414 383 aa11.6□□□□□ -0.55
Retrieved 100 of 22,080 RNA–protein pairs in 9.4 ms