Protein–RNA interactions for Protein: Q8K4L0

Ddx54, ATP-dependent RNA helicase DDX54, mousemouse

Known RBP Predictions only

Length 874 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx54Q8K4L0 Gm25239-201ENSMUST00000174915 86 ntBASIC53.99■■■■■ 6.23
Ddx54Q8K4L0 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC50.33■■■■■ 5.65
Ddx54Q8K4L0 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC49.51■■■■■ 5.52
Ddx54Q8K4L0 Gm24109-201ENSMUST00000175489 103 ntBASIC47.24■■■■■ 5.15
Ddx54Q8K4L0 Gm15042-201ENSMUST00000120212 883 ntBASIC46.36■■■■■ 5.01
Ddx54Q8K4L0 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC45.65■■■■■ 4.9
Ddx54Q8K4L0 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC45.62■■■■■ 4.89
Ddx54Q8K4L0 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC45.35■■■■■ 4.85
Ddx54Q8K4L0 Gm15045-201ENSMUST00000117359 883 ntBASIC45.19■■■■■ 4.82
Ddx54Q8K4L0 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC45.12■■■■■ 4.81
Ddx54Q8K4L0 Gm23366-201ENSMUST00000175022 89 ntBASIC44.97■■■■■ 4.79
Ddx54Q8K4L0 AC153911.1-202ENSMUST00000218534 1034 ntBASIC44.36■■■■■ 4.69
Ddx54Q8K4L0 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC43.95■■■■■ 4.63
Ddx54Q8K4L0 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC43.85■■■■■ 4.61
Ddx54Q8K4L0 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC43.83■■■■■ 4.61
Ddx54Q8K4L0 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC43.77■■■■■ 4.6
Ddx54Q8K4L0 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC43.36■■■■■ 4.53
Ddx54Q8K4L0 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC43.08■■■■■ 4.49
Ddx54Q8K4L0 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC43■■■■■ 4.47
Ddx54Q8K4L0 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC42.93■■■■■ 4.46
Ddx54Q8K4L0 Gm25238-201ENSMUST00000174914 89 ntBASIC42.89■■■■■ 4.46
Ddx54Q8K4L0 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC42.84■■■■■ 4.45
Ddx54Q8K4L0 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC41.99■■■■■ 4.31
Ddx54Q8K4L0 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC41.93■■■■■ 4.3
Ddx54Q8K4L0 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC41.9■■■■■ 4.3
Ddx54Q8K4L0 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC41.79■■■■■ 4.28
Ddx54Q8K4L0 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC41.79■■■■■ 4.28
Ddx54Q8K4L0 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC41.66■■■■■ 4.26
Ddx54Q8K4L0 Gm25262-201ENSMUST00000174934 133 ntBASIC41.49■■■■■ 4.23
Ddx54Q8K4L0 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC41.45■■■■■ 4.23
Ddx54Q8K4L0 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC41.32■■■■■ 4.21
Ddx54Q8K4L0 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC41.27■■■■■ 4.2
Ddx54Q8K4L0 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC41.26■■■■■ 4.19
Ddx54Q8K4L0 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC41.06■■■■■ 4.16
Ddx54Q8K4L0 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC40.93■■■■■ 4.14
Ddx54Q8K4L0 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC40.92■■■■■ 4.14
Ddx54Q8K4L0 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC40.91■■■■■ 4.14
Ddx54Q8K4L0 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC40.88■■■■■ 4.13
Ddx54Q8K4L0 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC40.85■■■■■ 4.13
Ddx54Q8K4L0 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC40.85■■■■■ 4.13
Ddx54Q8K4L0 Gm26115-201ENSMUST00000175605 87 ntBASIC40.8■■■■■ 4.12
Ddx54Q8K4L0 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC40.8■■■■■ 4.12
Ddx54Q8K4L0 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC40.7■■■■■ 4.11
Ddx54Q8K4L0 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC40.67■■■■■ 4.1
Ddx54Q8K4L0 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC40.61■■■■■ 4.09
Ddx54Q8K4L0 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC40.57■■■■■ 4.08
Ddx54Q8K4L0 Gm8109-201ENSMUST00000194076 746 ntBASIC40.48■■■■■ 4.07
Ddx54Q8K4L0 Gm27325-201ENSMUST00000175467 74 ntBASIC40.47■■■■■ 4.07
Ddx54Q8K4L0 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC40.45■■■■■ 4.07
Ddx54Q8K4L0 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC40.4■■■■■ 4.06
Ddx54Q8K4L0 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC40.32■■■■■ 4.05
Ddx54Q8K4L0 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC40.28■■■■■ 4.04
Ddx54Q8K4L0 Rab21-202ENSMUST00000218831 843 ntBASIC40.27■■■■■ 4.04
Ddx54Q8K4L0 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC40.11■■■■■ 4.01
Ddx54Q8K4L0 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC39.97■■■■□ 3.99
Ddx54Q8K4L0 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC39.9■■■■□ 3.98
Ddx54Q8K4L0 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC39.82■■■■□ 3.96
Ddx54Q8K4L0 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC39.78■■■■□ 3.96
Ddx54Q8K4L0 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC39.73■■■■□ 3.95
Ddx54Q8K4L0 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC39.62■■■■□ 3.93
Ddx54Q8K4L0 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC39.6■■■■□ 3.93
Ddx54Q8K4L0 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC39.53■■■■□ 3.92
Ddx54Q8K4L0 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC39.47■■■■□ 3.91
Ddx54Q8K4L0 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC39.46■■■■□ 3.91
Ddx54Q8K4L0 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC39.39■■■■□ 3.9
Ddx54Q8K4L0 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC39.38■■■■□ 3.89
Ddx54Q8K4L0 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC39.34■■■■□ 3.89
Ddx54Q8K4L0 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC39.25■■■■□ 3.87
Ddx54Q8K4L0 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC39.24■■■■□ 3.87
Ddx54Q8K4L0 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC39.23■■■■□ 3.87
Ddx54Q8K4L0 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC39.2■■■■□ 3.87
Ddx54Q8K4L0 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC39.1■■■■□ 3.85
Ddx54Q8K4L0 Gm24804-201ENSMUST00000174982 85 ntBASIC39.05■■■■□ 3.84
Ddx54Q8K4L0 Gm17082-201ENSMUST00000166043 1091 ntBASIC39.03■■■■□ 3.84
Ddx54Q8K4L0 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC39.02■■■■□ 3.84
Ddx54Q8K4L0 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC38.99■■■■□ 3.83
Ddx54Q8K4L0 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC38.91■■■■□ 3.82
Ddx54Q8K4L0 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC38.81■■■■□ 3.8
Ddx54Q8K4L0 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC38.76■■■■□ 3.8
Ddx54Q8K4L0 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC38.72■■■■□ 3.79
Ddx54Q8K4L0 Gm27322-201ENSMUST00000184007 104 ntBASIC38.65■■■■□ 3.78
Ddx54Q8K4L0 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC38.59■■■■□ 3.77
Ddx54Q8K4L0 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC38.55■■■■□ 3.76
Ddx54Q8K4L0 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC38.55■■■■□ 3.76
Ddx54Q8K4L0 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC38.53■■■■□ 3.76
Ddx54Q8K4L0 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC38.53■■■■□ 3.76
Ddx54Q8K4L0 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC38.49■■■■□ 3.75
Ddx54Q8K4L0 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC38.46■■■■□ 3.75
Ddx54Q8K4L0 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC38.44■■■■□ 3.74
Ddx54Q8K4L0 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC38.43■■■■□ 3.74
Ddx54Q8K4L0 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC38.43■■■■□ 3.74
Ddx54Q8K4L0 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC38.4■■■■□ 3.74
Ddx54Q8K4L0 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC38.39■■■■□ 3.74
Ddx54Q8K4L0 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC38.38■■■■□ 3.73
Ddx54Q8K4L0 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC38.37■■■■□ 3.73
Ddx54Q8K4L0 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC38.35■■■■□ 3.73
Ddx54Q8K4L0 Psd-208ENSMUST00000224556 2034 ntBASIC38.33■■■■□ 3.73
Ddx54Q8K4L0 Zfp131-205ENSMUST00000223812 663 ntBASIC38.32■■■■□ 3.72
Ddx54Q8K4L0 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC38.29■■■■□ 3.72
Ddx54Q8K4L0 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC38.25■■■■□ 3.71
Retrieved 100 of 76,532 protein–RNA pairs in 13.9 ms