RNA–Protein interactions for RNA: ENSMUST00000052648.8

Ccdc28a-201, Transcript of Coiled-coil domain-containing 28A, mousemouse

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Gene Ccdc28a, Length 2,255 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28a-201ENSMUST00000052648 Gm35339A0A140LHH9 1649 aa19.42■□□□□ 0.7
Ccdc28a-201ENSMUST00000052648 NischQ80TM9 1593 aa19.26■□□□□ 0.67
Ccdc28a-201ENSMUST00000052648 Abcc9P70170 1546 aa18.69■□□□□ 0.58
Ccdc28a-201ENSMUST00000052648 Abcc8B2RUS7 1588 aa18.52■□□□□ 0.56
Ccdc28a-201ENSMUST00000052648 ScribQ80U72 1612 aa17.69■□□□□ 0.42
Ccdc28a-201ENSMUST00000052648 Kdm5dQ62240 1548 aa17.16■□□□□ 0.34
Ccdc28a-201ENSMUST00000052648 Dcaf1Q80TR8 1506 aa17.16■□□□□ 0.34
Ccdc28a-201ENSMUST00000052648 NacadQ5SWP3 1504 aa17.14■□□□□ 0.34
Ccdc28a-201ENSMUST00000052648 Rhox8Q6VSS7 320 aa16.9■□□□□ 0.3
Ccdc28a-201ENSMUST00000052648 Rb1cc1Q9ESK9 1588 aa16.83■□□□□ 0.29
Ccdc28a-201ENSMUST00000052648 Sycp2Q9CUU3 1500 aa16.79■□□□□ 0.28
Ccdc28a-201ENSMUST00000052648 Ccdc180J3QNE4 1664 aa16.72■□□□□ 0.27
Ccdc28a-201ENSMUST00000052648 Baz1aO88379 1555 aa16.61■□□□□ 0.25
Ccdc28a-201ENSMUST00000052648 BicraF8VPZ9 1578 aa16.52■□□□□ 0.24
Ccdc28a-201ENSMUST00000052648 Crybg2B7ZCC2 1516 aa16.49■□□□□ 0.23
Ccdc28a-201ENSMUST00000052648 Rtl1Q7M732 1744 aa16.3■□□□□ 0.2
Ccdc28a-201ENSMUST00000052648 Zcchc6Q5BLK4 1491 aaKnown RBP16.27■□□□□ 0.2
Ccdc28a-201ENSMUST00000052648 Smarca2Q6DIC0 1577 aa16.17■□□□□ 0.18
Ccdc28a-201ENSMUST00000052648 Pds5bQ4VA53 1446 aaKnown RBP15.96■□□□□ 0.14
Ccdc28a-201ENSMUST00000052648 Cecr2E9Q2Z1 1453 aa15.93■□□□□ 0.14
Ccdc28a-201ENSMUST00000052648 Smarca4Q3TKT4 1613 aaKnown RBP15.92■□□□□ 0.14
Ccdc28a-201ENSMUST00000052648 Atad2bE9Q166 1460 aaKnown RBP15.89■□□□□ 0.13
Ccdc28a-201ENSMUST00000052648 Iqgap2Q3UQ44 1575 aa15.78■□□□□ 0.12
Ccdc28a-201ENSMUST00000052648 Ccdc136Q3TVA9 1136 aa15.76■□□□□ 0.11
Ccdc28a-201ENSMUST00000052648 Thoc2B1AZI6 1594 aaKnown RBP15.74■□□□□ 0.11
Ccdc28a-201ENSMUST00000052648 Brd4Q9ESU6 1400 aaKnown RBP15.71■□□□□ 0.1
Ccdc28a-201ENSMUST00000052648 Cttnbp2B9EJA2 1648 aa15.67■□□□□ 0.1
Ccdc28a-201ENSMUST00000052648 Synj1Q8CHC4 1574 aa15.67■□□□□ 0.1
Ccdc28a-201ENSMUST00000052648 Ercc6F8VPZ5 1481 aa15.65■□□□□ 0.1
Ccdc28a-201ENSMUST00000052648 CftrP26361 1476 aa15.65■□□□□ 0.1
Ccdc28a-201ENSMUST00000052648 Wdr62Q3U3T8 1523 aa15.58■□□□□ 0.09
Ccdc28a-201ENSMUST00000052648 Trim41Q5NCC3 630 aa15.55■□□□□ 0.08
Ccdc28a-201ENSMUST00000052648 Frmpd1A2AKB4 1549 aa15.54■□□□□ 0.08
Ccdc28a-201ENSMUST00000052648 Dnajc5bQ9CQ94 199 aa15.5■□□□□ 0.07
Ccdc28a-201ENSMUST00000052648 Cc2d2aQ8CFW7 1633 aa15.5■□□□□ 0.07
Ccdc28a-201ENSMUST00000052648 Fam135aQ6NS59 1506 aa15.44■□□□□ 0.06
Ccdc28a-201ENSMUST00000052648 Unc13aQ4KUS2 1712 aa15.44■□□□□ 0.06
Ccdc28a-201ENSMUST00000052648 Phldb1Q6PDH0 1371 aaKnown RBP15.37■□□□□ 0.05
Ccdc28a-201ENSMUST00000052648 Esf1Q3V1V3 845 aaKnown RBP15.34■□□□□ 0.05
Ccdc28a-201ENSMUST00000052648 Baz1bQ9Z277 1479 aa15.27■□□□□ 0.04
Ccdc28a-201ENSMUST00000052648 Golga3P55937 1487 aa15.27■□□□□ 0.04
Ccdc28a-201ENSMUST00000052648 Top2bQ64511 1612 aa15.26■□□□□ 0.03
Ccdc28a-201ENSMUST00000052648 Ubl4bQ9CQ84 188 aa15.18■□□□□ 0.02
Ccdc28a-201ENSMUST00000052648 Cngb1E1AZ71 1325 aa15.16■□□□□ 0.02
Ccdc28a-201ENSMUST00000052648 Rsf1E9PWW9 1441 aaKnown RBP15.15■□□□□ 0.02
Ccdc28a-201ENSMUST00000052648 Lamc3Q9R0B6 1581 aa15.14■□□□□ 0.01
Ccdc28a-201ENSMUST00000052648 Kif15Q6P9L6 1387 aa15.08■□□□□ 0
Ccdc28a-201ENSMUST00000052648 TnnQ80Z71 1560 aa15.08■□□□□ 0
Ccdc28a-201ENSMUST00000052648 Mrc2Q64449 1479 aa15.06■□□□□ 0
Ccdc28a-201ENSMUST00000052648 Fmn1Q05860 1466 aa15.04■□□□□ -0
Ccdc28a-201ENSMUST00000052648 Cux2P70298 1426 aa15□□□□□ -0.01
Ccdc28a-201ENSMUST00000052648 Ccdc88bQ4QRL3 1481 aa14.94□□□□□ -0.02
Ccdc28a-201ENSMUST00000052648 Camsap1A2AHC3 1581 aa14.91□□□□□ -0.02
Ccdc28a-201ENSMUST00000052648 HrcG5E8J6 738 aa14.9□□□□□ -0.02
Ccdc28a-201ENSMUST00000052648 Ccdc18Q640L5 1455 aa14.89□□□□□ -0.03
Ccdc28a-201ENSMUST00000052648 Kif21aQ9QXL2 1672 aa14.86□□□□□ -0.03
Ccdc28a-201ENSMUST00000052648 Npm1Q61937 292 aaKnown RBP14.84□□□□□ -0.03
Ccdc28a-201ENSMUST00000052648 Cep164Q5DU05 1446 aa14.84□□□□□ -0.03
Ccdc28a-201ENSMUST00000052648 Chic1Q8CBW7 227 aa14.83□□□□□ -0.03
Ccdc28a-201ENSMUST00000052648 Top2aQ01320 1528 aaKnown RBP14.83□□□□□ -0.03
Ccdc28a-201ENSMUST00000052648 Il27Q8K3I6 234 aa14.79□□□□□ -0.04
Ccdc28a-201ENSMUST00000052648 Lrriq1Q0P5X1 1673 aa14.75□□□□□ -0.05
Ccdc28a-201ENSMUST00000052648 LrpprcQ6PB66 1392 aaKnown RBP14.74□□□□□ -0.05
Ccdc28a-201ENSMUST00000052648 Grin2bQ01097 1482 aa14.72□□□□□ -0.05
Ccdc28a-201ENSMUST00000052648 Dhx29Q6PGC1 1365 aaKnown RBP14.71□□□□□ -0.05
Ccdc28a-201ENSMUST00000052648 PogzQ8BZH4 1409 aaKnown RBP14.69□□□□□ -0.06
Ccdc28a-201ENSMUST00000052648 Crocc2F6XLV1 1638 aa14.69□□□□□ -0.06
Ccdc28a-201ENSMUST00000052648 NrkQ9R0G8 1455 aa14.64□□□□□ -0.07
Ccdc28a-201ENSMUST00000052648 Duox2A2AQ99 1517 aa14.64□□□□□ -0.07
Ccdc28a-201ENSMUST00000052648 Urb2E9Q7L1 1524 aaKnown RBP14.61□□□□□ -0.07
Ccdc28a-201ENSMUST00000052648 Efcab5A0JP43 1406 aa14.59□□□□□ -0.07
Ccdc28a-201ENSMUST00000052648 Shroom4Q1W617 1475 aa14.59□□□□□ -0.07
Ccdc28a-201ENSMUST00000052648 Plb1Q3TTY0 1478 aa14.59□□□□□ -0.07
Ccdc28a-201ENSMUST00000052648 Samd9lQ69Z37 1561 aa14.56□□□□□ -0.08
Ccdc28a-201ENSMUST00000052648 PtprkP35822 1457 aa14.56□□□□□ -0.08
Ccdc28a-201ENSMUST00000052648 Eif4g3Q80XI3 1579 aaKnown RBP14.54□□□□□ -0.08
Ccdc28a-201ENSMUST00000052648 Gab3Q8BSM5 595 aa14.52□□□□□ -0.08
Ccdc28a-201ENSMUST00000052648 Ift140E9PY46 1464 aa14.5□□□□□ -0.09
Ccdc28a-201ENSMUST00000052648 Rapgef2Q8CHG7 1496 aa14.5□□□□□ -0.09
Ccdc28a-201ENSMUST00000052648 Setd1bQ8CFT2 1985 aa14.49□□□□□ -0.09
Ccdc28a-201ENSMUST00000052648 Pbrm1Q8BSQ9 1634 aaKnown RBP14.46□□□□□ -0.09
Ccdc28a-201ENSMUST00000052648 Npm2Q80W85 207 aa14.44□□□□□ -0.1
Ccdc28a-201ENSMUST00000052648 Disp1Q3TDN0 1521 aa14.44□□□□□ -0.1
Ccdc28a-201ENSMUST00000052648 Eif4g1Q6NZJ6 1600 aaKnown RBP14.43□□□□□ -0.1
Ccdc28a-201ENSMUST00000052648 SynmQ70IV5 1561 aa14.43□□□□□ -0.1
Ccdc28a-201ENSMUST00000052648 Rad54l2Q99NG0 1466 aa14.41□□□□□ -0.1
Ccdc28a-201ENSMUST00000052648 Mroh2bQ7M6Y6 1581 aa14.4□□□□□ -0.1
Ccdc28a-201ENSMUST00000052648 Rusc2Q80U22 1514 aa14.4□□□□□ -0.1
Ccdc28a-201ENSMUST00000052648 Magi3Q9EQJ9 1476 aa14.39□□□□□ -0.11
Ccdc28a-201ENSMUST00000052648 Cep162Q6ZQ06 1403 aa14.39□□□□□ -0.11
Ccdc28a-201ENSMUST00000052648 Nup160Q9Z0W3 1402 aaKnown RBP14.39□□□□□ -0.11
Ccdc28a-201ENSMUST00000052648 Map3k1P53349 1493 aa14.38□□□□□ -0.11
Ccdc28a-201ENSMUST00000052648 Arhgap35Q91YM2 1499 aa14.38□□□□□ -0.11
Ccdc28a-201ENSMUST00000052648 Grin2aP35436 1464 aa14.37□□□□□ -0.11
Ccdc28a-201ENSMUST00000052648 Zeb1Q64318 1117 aa14.36□□□□□ -0.11
Ccdc28a-201ENSMUST00000052648 Gpatch8A2A6A1 1505 aa14.36□□□□□ -0.11
Ccdc28a-201ENSMUST00000052648 Pla2r1Q62028 1487 aa14.34□□□□□ -0.11
Ccdc28a-201ENSMUST00000052648 Cc2d2bA0A286YDU8 1405 aa14.33□□□□□ -0.12
Ccdc28a-201ENSMUST00000052648 Dnajc5P60904 198 aa14.32□□□□□ -0.12
Ccdc28a-201ENSMUST00000052648 AqrQ8CFQ3 1481 aaKnown RBP14.31□□□□□ -0.12
Retrieved 100 of 22,080 RNA–protein pairs in 25.7 ms