RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 NSMCE3Q96MG7 304 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 KCNA7Q96RP8 456 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 SLC9A7Q96T83 725 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 NPAS2Q99743 824 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 BTBD10Q9BSF8 475 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 ZBED2Q9BTP6 218 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 TUBB6Q9BUF5 446 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 ACE2Q9BYF1 805 aaPredicted RBP8.46□□□□□ -1.06
CD44-208ENST00000428726 GBA3Q9H227 469 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 GLOD4Q9HC38 313 aa8.46□□□□□ -1.06
CD44-208ENST00000428726 APOBEC2Q9Y235 224 aaKnown RBP8.46□□□□□ -1.06
CD44-208ENST00000428726 NUP214P35658 2090 aaPredicted RBP8.45□□□□□ -1.06
CD44-208ENST00000428726 COL6A3P12111 3177 aa8.45□□□□□ -1.06
CD44-208ENST00000428726 MYOCOSA0A1B0GUC4 107 aa8.45□□□□□ -1.06
CD44-208ENST00000428726 FAM95CA0A1B0GW59 222 aa8.45□□□□□ -1.06
CD44-208ENST00000428726 SIN3BO75182 1162 aa8.45□□□□□ -1.06
CD44-208ENST00000428726 ARNTP27540 789 aa8.45□□□□□ -1.06
CD44-208ENST00000428726 PTPN4P29074 926 aa8.45□□□□□ -1.06
CD44-208ENST00000428726 HOXC8P31273 242 aa8.45□□□□□ -1.06
CD44-208ENST00000428726 CRHR1P34998 444 aa8.45□□□□□ -1.06
CD44-208ENST00000428726 SERPINB6P35237 376 aa8.45□□□□□ -1.06
CD44-208ENST00000428726 CASP2P42575 452 aa8.45□□□□□ -1.06
CD44-208ENST00000428726 IDH3AP50213 366 aa8.45□□□□□ -1.06
CD44-208ENST00000428726 FRMD7Q6ZUT3 714 aa8.45□□□□□ -1.06
CD44-208ENST00000428726 SPRED2Q7Z698 418 aa8.45□□□□□ -1.06
CD44-208ENST00000428726 TMEM86AQ8N2M4 240 aa8.45□□□□□ -1.06
CD44-208ENST00000428726 PGBD5Q8N414 524 aa8.45□□□□□ -1.06
CD44-208ENST00000428726 HEXDCQ8WVB3 486 aa8.45□□□□□ -1.06
CD44-208ENST00000428726 SKA1Q96BD8 255 aa8.45□□□□□ -1.06
CD44-208ENST00000428726 DNAJC1Q96KC8 554 aaKnown RBP8.45□□□□□ -1.06
CD44-208ENST00000428726 MRGPRX2Q96LB1 330 aa8.45□□□□□ -1.06
CD44-208ENST00000428726 RBBP8Q99708 897 aa8.45□□□□□ -1.06
CD44-208ENST00000428726 NAT9Q9BTE0 207 aa8.45□□□□□ -1.06
CD44-208ENST00000428726 UNC93B1Q9H1C4 597 aa8.45□□□□□ -1.06
CD44-208ENST00000428726 CREBZFQ9NS37 354 aa8.45□□□□□ -1.06
CD44-208ENST00000428726 PPM1HQ9ULR3 514 aa8.45□□□□□ -1.06
CD44-208ENST00000428726 PCDHB7Q9Y5E2 793 aa8.45□□□□□ -1.06
CD44-208ENST00000428726 KIF1CO43896 1103 aaKnown RBP8.45□□□□□ -1.06
CD44-208ENST00000428726 GNAZP19086 355 aa8.45□□□□□ -1.06
CD44-208ENST00000428726 SPRP35270 261 aaPredicted RBP8.45□□□□□ -1.06
CD44-208ENST00000428726 GGT5P36269 586 aa8.45□□□□□ -1.06
CD44-208ENST00000428726 PRAMEP78395 509 aa8.45□□□□□ -1.06
CD44-208ENST00000428726 SEMA3BQ13214 749 aa8.45□□□□□ -1.06
CD44-208ENST00000428726 PRPSAP1Q14558 356 aa8.45□□□□□ -1.06
CD44-208ENST00000428726 ATXN7L2Q5T6C5 722 aaPredicted RBP8.45□□□□□ -1.06
CD44-208ENST00000428726 MARC1Q5VT66 337 aa8.45□□□□□ -1.06
CD44-208ENST00000428726 STEAP4Q687X5 459 aa8.45□□□□□ -1.06
CD44-208ENST00000428726 PDPK2PQ6A1A2 396 aa8.45□□□□□ -1.06
CD44-208ENST00000428726 FAM171BQ6P995 826 aa8.45□□□□□ -1.06
CD44-208ENST00000428726 TIFABQ6ZNK6 161 aa8.45□□□□□ -1.06
CD44-208ENST00000428726 SLC24A5Q71RS6 500 aa8.45□□□□□ -1.06
CD44-208ENST00000428726 PDZD4Q76G19 769 aaPredicted RBP8.45□□□□□ -1.06
CD44-208ENST00000428726 NUP93Q8N1F7 819 aa8.45□□□□□ -1.06
CD44-208ENST00000428726 NSUN5Q96P11 429 aaKnown RBP8.45□□□□□ -1.06
CD44-208ENST00000428726 LENG8Q96PV6 779 aaPredicted RBP8.45□□□□□ -1.06
CD44-208ENST00000428726 GALPQ9UBC7 116 aa8.45□□□□□ -1.06
CD44-208ENST00000428726 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.45□□□□□ -1.06
CD44-208ENST00000428726 PTCH2Q9Y6C5 1203 aa8.45□□□□□ -1.06
CD44-208ENST00000428726 MUC3AQ02505 3323 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 hCG_2014768A0A024R1R8 64 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 A0A1B0GTL3 188 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 KCNU1A8MYU2 1149 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 TRAFD1O14545 582 aaPredicted RBP8.44□□□□□ -1.06
CD44-208ENST00000428726 ALDH1A2O94788 518 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 ALDH2P05091 517 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 YWHAQP27348 245 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 SLC6A4P31645 630 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 PIK3CGP48736 1102 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 NUDT2P50583 147 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 GALNT2Q10471 571 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 TWF1Q12792 350 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 CDH17Q12864 832 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 GRIK3Q13003 919 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 BLMHQ13867 455 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 POLD3Q15054 466 aaPredicted RBP8.44□□□□□ -1.06
CD44-208ENST00000428726 RAB41Q5JT25 222 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 SH2D4BQ5SQS7 431 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 DENND5AQ6IQ26 1287 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 DIS3LQ8TF46 1054 aaKnown RBP8.44□□□□□ -1.06
CD44-208ENST00000428726 TSC22D3Q99576 134 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 RNF38Q9H0F5 515 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 BTRCQ9Y297 605 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 RAD54BQ9Y620 910 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 MYOFQ9NZM1 2061 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 CELSR3Q9NYQ7 3312 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 SPECC1L-ADORA2AF8WAN1 911 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 TNFRSF10BO14763 440 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 OR1I1O60431 355 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 DLX3O60479 287 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 KPNA6O60684 536 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 CCDC22O60826 627 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 WFS1O76024 890 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 SUPT7LO94864 414 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 PRAMEF12O95522 483 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 FGFR3P22607 806 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 FMO4P31512 558 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 ABCE1P61221 599 aaKnown RBP8.44□□□□□ -1.06
CD44-208ENST00000428726 NAB1Q13506 487 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 STXBP5Q5T5C0 1151 aa8.44□□□□□ -1.06
CD44-208ENST00000428726 ZNF697Q5TEC3 545 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms