RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 ERGIC3Q9Y282 383 aa9.9□□□□□ -0.82
USP54-205ENST00000424265 CEPT1Q9Y6K0 416 aa9.9□□□□□ -0.82
USP54-205ENST00000424265 CAPN8A6NHC0 703 aa9.9□□□□□ -0.82
USP54-205ENST00000424265 CES2O00748 559 aa9.9□□□□□ -0.82
USP54-205ENST00000424265 STBD1O95210 358 aa9.9□□□□□ -0.82
USP54-205ENST00000424265 CDH1P12830 882 aa9.9□□□□□ -0.82
USP54-205ENST00000424265 TAC1P20366 129 aa9.9□□□□□ -0.82
USP54-205ENST00000424265 SLC10A6Q3KNW5 377 aa9.9□□□□□ -0.82
USP54-205ENST00000424265 TRIM60Q495X7 471 aa9.9□□□□□ -0.82
USP54-205ENST00000424265 SETD3Q86TU7 594 aaPredicted RBP9.9□□□□□ -0.82
USP54-205ENST00000424265 ULK2Q8IYT8 1036 aa9.9□□□□□ -0.82
USP54-205ENST00000424265 C7orf61Q8IZ16 206 aa9.9□□□□□ -0.82
USP54-205ENST00000424265 ZNF512Q96ME7 567 aaPredicted RBP9.9□□□□□ -0.82
USP54-205ENST00000424265 TBCBQ99426 244 aa9.9□□□□□ -0.82
USP54-205ENST00000424265 LHX5Q9H2C1 402 aa9.9□□□□□ -0.82
USP54-205ENST00000424265 WASH6PQ9NQA3 447 aa9.9□□□□□ -0.82
USP54-205ENST00000424265 ANKMY1Q9P2S6 941 aa9.9□□□□□ -0.82
USP54-205ENST00000424265 TSPAN16Q9UKR8 245 aa9.9□□□□□ -0.82
USP54-205ENST00000424265 OGDHLQ9ULD0 1010 aa9.9□□□□□ -0.82
USP54-205ENST00000424265 NOSIPQ9Y314 301 aaKnown RBP9.9□□□□□ -0.82
USP54-205ENST00000424265 GIMAP1-GIMAP5A0A087WTJ2 511 aa9.9□□□□□ -0.82
USP54-205ENST00000424265 ARL5CA6NH57 179 aa9.9□□□□□ -0.82
USP54-205ENST00000424265 TLL1O43897 1013 aa9.9□□□□□ -0.82
USP54-205ENST00000424265 TTKP33981 857 aa9.9□□□□□ -0.82
USP54-205ENST00000424265 HAAOP46952 286 aa9.9□□□□□ -0.82
USP54-205ENST00000424265 TRIM32Q13049 653 aa9.9□□□□□ -0.82
USP54-205ENST00000424265 UBE2UQ5VVX9 321 aa9.9□□□□□ -0.82
USP54-205ENST00000424265 XKR5Q6UX68 686 aa9.9□□□□□ -0.82
USP54-205ENST00000424265 GIMAP5Q96F15 307 aa9.9□□□□□ -0.82
USP54-205ENST00000424265 KATNBL1Q9H079 304 aa9.9□□□□□ -0.82
USP54-205ENST00000424265 KLC2Q9H0B6 622 aa9.9□□□□□ -0.82
USP54-205ENST00000424265 TLR8Q9NR97 1041 aaKnown RBP9.9□□□□□ -0.82
USP54-205ENST00000424265 POLIQ9UNA4 740 aa9.9□□□□□ -0.82
USP54-205ENST00000424265 A0A087WXM4 84 aa9.9□□□□□ -0.83
USP54-205ENST00000424265 A0A1W2PRG6 482 aa9.9□□□□□ -0.83
USP54-205ENST00000424265 ALOX15BO15296 676 aa9.9□□□□□ -0.83
USP54-205ENST00000424265 CDH16O75309 829 aa9.9□□□□□ -0.83
USP54-205ENST00000424265 WARSP23381 471 aaKnown RBP9.9□□□□□ -0.83
USP54-205ENST00000424265 PKLRP30613 574 aa9.9□□□□□ -0.83
USP54-205ENST00000424265 ZFP69Q49AA0 526 aa9.9□□□□□ -0.83
USP54-205ENST00000424265 C11orf63Q6NUN7 778 aa9.9□□□□□ -0.83
USP54-205ENST00000424265 VSTM1Q6UX27 236 aa9.9□□□□□ -0.83
USP54-205ENST00000424265 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.9□□□□□ -0.83
USP54-205ENST00000424265 SDCCAG3Q96C92 435 aa9.9□□□□□ -0.83
USP54-205ENST00000424265 SLC9A7Q96T83 725 aa9.9□□□□□ -0.83
USP54-205ENST00000424265 CNPY3Q9BT09 278 aa9.9□□□□□ -0.83
USP54-205ENST00000424265 TTPALQ9BTX7 342 aa9.9□□□□□ -0.83
USP54-205ENST00000424265 CYP4F11Q9HBI6 524 aa9.9□□□□□ -0.83
USP54-205ENST00000424265 MAGEE1Q9HCI5 957 aa9.9□□□□□ -0.83
USP54-205ENST00000424265 HES2Q9Y543 173 aa9.9□□□□□ -0.83
USP54-205ENST00000424265 HEMK1Q9Y5R4 338 aaPredicted RBP9.9□□□□□ -0.83
USP54-205ENST00000424265 EXOC1LA0A1B0GW35 172 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 SOBPA7XYQ1 873 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 BTNL10A8MVZ5 291 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 AXIN1O15169 862 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 SPAG6O75602 509 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 OVGP1Q12889 678 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 TOP3AQ13472 1001 aaPredicted RBP9.89□□□□□ -0.83
USP54-205ENST00000424265 MAPRE2Q15555 327 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 FAM26DQ5JW98 314 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 ATAD3BQ5T9A4 648 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 ATG16L1Q676U5 607 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 OTOP3Q7RTS5 596 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 CDKL3Q8IVW4 592 aaPredicted RBP9.89□□□□□ -0.83
USP54-205ENST00000424265 ANKRD52Q8NB46 1076 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 SERPINI1Q99574 410 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 HPS4Q9NQG7 708 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 WARS2Q9UGM6 360 aaKnown RBP9.89□□□□□ -0.83
USP54-205ENST00000424265 TAGLN3Q9UI15 199 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 PPM1HQ9ULR3 514 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 POLR1CO15160 346 aaPredicted RBP9.89□□□□□ -0.83
USP54-205ENST00000424265 ATF2P15336 505 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 MAGEA4P43358 317 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 GLUD2P49448 558 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 VBP1P61758 197 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 CDO1Q16878 200 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 UGT2A3Q6UWM9 527 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 SYDE1Q6ZW31 735 aaPredicted RBP9.89□□□□□ -0.83
USP54-205ENST00000424265 OR8K3Q8NH51 312 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 ZNF398Q8TD17 642 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 EPS8L1Q8TE68 723 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 POLR2AP24928 1970 aaKnown RBP9.89□□□□□ -0.83
USP54-205ENST00000424265 SIPA1L1O43166 1804 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 PJA2O43164 708 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 RRM2P31350 389 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 HTRA3P83110 453 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 RAB30Q15771 203 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 CCBE1Q6UXH8 406 aaPredicted RBP9.89□□□□□ -0.83
USP54-205ENST00000424265 ZNF571Q7Z3V5 609 aaPredicted RBP9.89□□□□□ -0.83
USP54-205ENST00000424265 ZNF557Q8N988 423 aaPredicted RBP9.89□□□□□ -0.83
USP54-205ENST00000424265 C1orf127Q8N9H9 656 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 B3GALNT2Q8NCR0 500 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 TRUB1Q8WWH5 349 aaKnown RBP9.89□□□□□ -0.83
USP54-205ENST00000424265 FBXO32Q969P5 355 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 TSSK1BQ9BXA7 367 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 RMND5AQ9H871 391 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 ARHGAP20Q9P2F6 1191 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 TJP2Q9UDY2 1190 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 ADAM28Q9UKQ2 775 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 INSL6Q9Y581 213 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms