RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 EGR1P18146 543 aa6.78□□□□□ -1.32
USP40-202ENST00000409945 GLRA2P23416 452 aa6.78□□□□□ -1.32
USP40-202ENST00000409945 NPTX2P47972 431 aa6.78□□□□□ -1.32
USP40-202ENST00000409945 PRPF4BQ13523 1007 aaKnown RBP6.78□□□□□ -1.32
USP40-202ENST00000409945 CAPSQ13938 189 aa6.78□□□□□ -1.32
USP40-202ENST00000409945 STK38Q15208 465 aa6.78□□□□□ -1.32
USP40-202ENST00000409945 USP39Q53GS9 565 aaKnown RBP6.78□□□□□ -1.32
USP40-202ENST00000409945 SLC27A1Q6PCB7 646 aa6.78□□□□□ -1.32
USP40-202ENST00000409945 CLNKQ7Z7G1 428 aa6.78□□□□□ -1.32
USP40-202ENST00000409945 FAM109AQ8N4B1 249 aa6.78□□□□□ -1.32
USP40-202ENST00000409945 CPEB3Q8NE35 698 aaKnown RBP6.78□□□□□ -1.32
USP40-202ENST00000409945 HERPUD2Q9BSE4 406 aa6.78□□□□□ -1.32
USP40-202ENST00000409945 SELENOOQ9BVL4 669 aa6.78□□□□□ -1.32
USP40-202ENST00000409945 EPS8L2Q9H6S3 715 aa6.78□□□□□ -1.32
USP40-202ENST00000409945 XPNPEP1Q9NQW7 623 aa6.78□□□□□ -1.32
USP40-202ENST00000409945 SPG21Q9NZD8 308 aa6.78□□□□□ -1.32
USP40-202ENST00000409945 LARSQ9P2J5 1176 aaKnown RBP6.78□□□□□ -1.32
USP40-202ENST00000409945 DKK2Q9UBU2 259 aa6.78□□□□□ -1.32
USP40-202ENST00000409945 CAPN11Q9UMQ6 739 aa6.78□□□□□ -1.32
USP40-202ENST00000409945 HPSEQ9Y251 543 aa6.78□□□□□ -1.32
USP40-202ENST00000409945 PCDHB2Q9Y5E7 798 aa6.78□□□□□ -1.32
USP40-202ENST00000409945 ATP6V1DQ9Y5K8 247 aa6.78□□□□□ -1.32
USP40-202ENST00000409945 CHD9Q3L8U1 2897 aa6.77□□□□□ -1.33
USP40-202ENST00000409945 NLRC5Q86WI3 1866 aa6.77□□□□□ -1.33
USP40-202ENST00000409945 F5H697 171 aa6.77□□□□□ -1.33
USP40-202ENST00000409945 TBCAO75347 108 aaKnown RBP6.77□□□□□ -1.33
USP40-202ENST00000409945 PIAS2O75928 621 aa6.77□□□□□ -1.33
USP40-202ENST00000409945 PRKCBP05771 671 aa6.77□□□□□ -1.33
USP40-202ENST00000409945 PPP3CBP16298 524 aa6.77□□□□□ -1.33
USP40-202ENST00000409945 ITGALP20701 1170 aa6.77□□□□□ -1.33
USP40-202ENST00000409945 CA8P35219 290 aa6.77□□□□□ -1.33
USP40-202ENST00000409945 COPAP53621 1224 aa6.77□□□□□ -1.33
USP40-202ENST00000409945 PNLIPRP1P54315 467 aa6.77□□□□□ -1.33
USP40-202ENST00000409945 GIT2Q14161 759 aa6.77□□□□□ -1.33
USP40-202ENST00000409945 PRKD1Q15139 912 aaPredicted RBP6.77□□□□□ -1.33
USP40-202ENST00000409945 TMEM95Q3KNT9 176 aa6.77□□□□□ -1.33
USP40-202ENST00000409945 KRTAP19-4Q3LI73 84 aa6.77□□□□□ -1.33
USP40-202ENST00000409945 DCAF4L1Q3SXM0 396 aa6.77□□□□□ -1.33
USP40-202ENST00000409945 ZACNQ401N2 412 aa6.77□□□□□ -1.33
USP40-202ENST00000409945 ATL3Q6DD88 541 aa6.77□□□□□ -1.33
USP40-202ENST00000409945 PGBD2Q6P3X8 592 aa6.77□□□□□ -1.33
USP40-202ENST00000409945 SNX19Q92543 992 aa6.77□□□□□ -1.33
USP40-202ENST00000409945 ENTPD7Q9NQZ7 604 aa6.77□□□□□ -1.33
USP40-202ENST00000409945 CFAP45Q9UL16 551 aa6.77□□□□□ -1.33
USP40-202ENST00000409945 SHOC2Q9UQ13 582 aa6.77□□□□□ -1.33
USP40-202ENST00000409945 LZTS1Q9Y250 596 aa6.77□□□□□ -1.33
USP40-202ENST00000409945 TRANK1O15050 2925 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 E9PMD0 336 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 TSPAN1O60635 241 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 ZC3H11AO75152 810 aaKnown RBP eCLIP6.76□□□□□ -1.33
USP40-202ENST00000409945 PLA2G4BP0C869 781 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 NUCB2P80303 420 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 CEBPZQ03701 1054 aaKnown RBP6.76□□□□□ -1.33
USP40-202ENST00000409945 MBTD1Q05BQ5 628 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 TP53BP2Q13625 1128 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 FAM187BQ17R55 369 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 MGAT5BQ3V5L5 792 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 PREPLQ4J6C6 727 aaPredicted RBP6.76□□□□□ -1.33
USP40-202ENST00000409945 HYIQ5T013 277 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 DEPDC1Q5TB30 811 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 FOXR2Q6PJQ5 311 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 CCDC73Q6ZRK6 1079 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 C1orf210Q8IVY1 113 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 SYT2Q8N9I0 419 aaPredicted RBP6.76□□□□□ -1.33
USP40-202ENST00000409945 COLGALT1Q8NBJ5 622 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 CASD1Q96PB1 797 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 TCHPQ9BT92 498 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 PTDSS2Q9BVG9 487 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 ALG13Q9NP73 1137 aaKnown RBP6.76□□□□□ -1.33
USP40-202ENST00000409945 ITM2CQ9NQX7 267 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 SMPD4Q9NXE4 827 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 ODF2LQ9ULJ1 636 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 A0A087WWV3 80 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 A0A0B4J269 797 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 EPOPA6NHQ4 379 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 PP2D1A8MPX8 630 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 PCDH17O14917 1159 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 USP1O94782 785 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 CDC25AP30304 524 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 MATR3P43243 847 aaKnown RBP eCLIP6.76□□□□□ -1.336e-8■■■■■ 28.8
USP40-202ENST00000409945 PRKAG1P54619 331 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 PEX3P56589 373 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 EIF2B5Q13144 721 aaKnown RBP6.76□□□□□ -1.33
USP40-202ENST00000409945 TUBB3Q13509 450 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 BLMHQ13867 455 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 POSTNQ15063 836 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 TAF5Q15542 800 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 RINT1Q6NUQ1 792 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 LAYNQ6UX15 382 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 MRPL10Q7Z7H8 261 aaKnown RBP6.76□□□□□ -1.33
USP40-202ENST00000409945 ZNF276Q8N554 614 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 STT3BQ8TCJ2 826 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 CCT6BQ92526 530 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 MRPS27Q92552 414 aaKnown RBP6.76□□□□□ -1.33
USP40-202ENST00000409945 LARP4BQ92615 738 aaKnown RBP6.76□□□□□ -1.33
USP40-202ENST00000409945 TBC1D20Q96BZ9 403 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 BICD1Q96G01 975 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 CPB2Q96IY4 423 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 MED15Q96RN5 788 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 CDCA3Q99618 268 aaPredicted RBP6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms