RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 AEBP2Q6ZN18 517 aaPredicted RBP26.2■■□□□ 1.78
USP40-202ENST00000409945 CHIC1Q5VXU3 224 aa25.83■■□□□ 1.73
USP40-202ENST00000409945 PHF23Q9BUL5 403 aaPredicted RBP22.98■■□□□ 1.27
USP40-202ENST00000409945 SENP3Q9H4L4 574 aaPredicted RBP21.81■■□□□ 1.08
USP40-202ENST00000409945 PLPPR3Q6T4P5 718 aa21.1■□□□□ 0.97
USP40-202ENST00000409945 FOXD1Q16676 465 aa20.4■□□□□ 0.86
USP40-202ENST00000409945 PPP6R1Q9UPN7 881 aa20.16■□□□□ 0.82
USP40-202ENST00000409945 ADRA2BP18089 450 aa20.11■□□□□ 0.81
USP40-202ENST00000409945 PIAS4Q8N2W9 510 aaPredicted RBP19.28■□□□□ 0.68
USP40-202ENST00000409945 KCNA4P22459 653 aa19.04■□□□□ 0.64
USP40-202ENST00000409945 PPP4R3CPQ6ZMV5 832 aa18.75■□□□□ 0.59
USP40-202ENST00000409945 MSH5O43196 834 aa18.34■□□□□ 0.53
USP40-202ENST00000409945 EHMT2Q96KQ7 1210 aa18.29■□□□□ 0.52
USP40-202ENST00000409945 NPM3O75607 178 aaKnown RBP18.21■□□□□ 0.51
USP40-202ENST00000409945 NCBP3Q53F19 620 aaKnown RBP18.17■□□□□ 0.5
USP40-202ENST00000409945 MAPK8IP2Q13387 824 aaPredicted RBP18.16■□□□□ 0.5
USP40-202ENST00000409945 SLC4A1APQ9BWU0 796 aaKnown RBP18.06■□□□□ 0.48
USP40-202ENST00000409945 CNKSR2Q8WXI2 1034 aa18.02■□□□□ 0.47
USP40-202ENST00000409945 SCAF1Q9H7N4 1312 aaKnown RBP17.99■□□□□ 0.47
USP40-202ENST00000409945 CSRNP3Q8WYN3 585 aa17.84■□□□□ 0.45
USP40-202ENST00000409945 ZBTB22O15209 634 aa17.65■□□□□ 0.42
USP40-202ENST00000409945 DMRT2Q9Y5R5 561 aa17.56■□□□□ 0.4
USP40-202ENST00000409945 RNF216Q9NWF9 866 aaPredicted RBP17.55■□□□□ 0.4
USP40-202ENST00000409945 HOXD11P31277 338 aaPredicted RBP17.39■□□□□ 0.37
USP40-202ENST00000409945 DNAJC5BQ9UF47 199 aa17.38■□□□□ 0.37
USP40-202ENST00000409945 FOXD4L1Q9NU39 408 aa17.18■□□□□ 0.34
USP40-202ENST00000409945 SLC4A2P04920 1241 aa17.15■□□□□ 0.34
USP40-202ENST00000409945 DCAF8L1A6NGE4 600 aa16.82■□□□□ 0.28
USP40-202ENST00000409945 MYCNP04198 464 aaPredicted RBP16.64■□□□□ 0.26
USP40-202ENST00000409945 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.54■□□□□ 0.243e-6■■■□□ 16.3
USP40-202ENST00000409945 ATF5Q9Y2D1 282 aaPredicted RBP16.49■□□□□ 0.23
USP40-202ENST00000409945 U3KPZ7 1027 aaPredicted RBP16.48■□□□□ 0.23
USP40-202ENST00000409945 ATXN8OSP0DMR3 200 aa16.41■□□□□ 0.22
USP40-202ENST00000409945 SAMD1Q6SPF0 538 aaPredicted RBP16.14■□□□□ 0.17
USP40-202ENST00000409945 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.09■□□□□ 0.17
USP40-202ENST00000409945 HNRNPUL2Q1KMD3 747 aaKnown RBP16.09■□□□□ 0.17
USP40-202ENST00000409945 POTEDQ86YR6 584 aa16.06■□□□□ 0.16
USP40-202ENST00000409945 FKBP8Q14318 412 aa16.02■□□□□ 0.16
USP40-202ENST00000409945 SPINK5Q9NQ38 1064 aaPredicted RBP15.95■□□□□ 0.14
USP40-202ENST00000409945 RNF39Q9H2S5 420 aa15.94■□□□□ 0.14
USP40-202ENST00000409945 ZNF219Q9P2Y4 722 aaPredicted RBP15.94■□□□□ 0.14
USP40-202ENST00000409945 TRHP20396 242 aaPredicted RBP15.78■□□□□ 0.12
USP40-202ENST00000409945 MKRN4PQ13434 485 aaPredicted RBP15.74■□□□□ 0.11
USP40-202ENST00000409945 APLP2Q06481 763 aa15.68■□□□□ 0.1
USP40-202ENST00000409945 CAPN15O75808 1086 aa15.68■□□□□ 0.1
USP40-202ENST00000409945 POLA2Q14181 598 aa15.64■□□□□ 0.09
USP40-202ENST00000409945 C1QBPQ07021 282 aaKnown RBP15.62■□□□□ 0.09
USP40-202ENST00000409945 RTN4Q9NQC3 1192 aaKnown RBP15.59■□□□□ 0.09
USP40-202ENST00000409945 ABCB7O75027 752 aa15.56■□□□□ 0.08
USP40-202ENST00000409945 SPDYE4A6NLX3 237 aa15.45■□□□□ 0.06
USP40-202ENST00000409945 DSG3P32926 999 aa15.37■□□□□ 0.05
USP40-202ENST00000409945 FBLN2P98095 1184 aa15.35■□□□□ 0.05
USP40-202ENST00000409945 AMER1Q5JTC6 1135 aaPredicted RBP15.3■□□□□ 0.04
USP40-202ENST00000409945 PROM2Q8N271 834 aa15.3■□□□□ 0.04
USP40-202ENST00000409945 OSCARQ8IYS5 282 aa15.15■□□□□ 0.02
USP40-202ENST00000409945 ZBTB12Q9Y330 459 aaPredicted RBP15.12■□□□□ 0.01
USP40-202ENST00000409945 CACNB1Q02641 598 aaPredicted RBP15.09■□□□□ 0.01
USP40-202ENST00000409945 FBXO3Q9UK99 471 aa15.04■□□□□ -0
USP40-202ENST00000409945 VASPP50552 380 aaPredicted RBP15.04■□□□□ -0
USP40-202ENST00000409945 IFNLR1Q8IU57 520 aaPredicted RBP14.99□□□□□ -0.01
USP40-202ENST00000409945 ZNF692Q9BU19 519 aaPredicted RBP14.99□□□□□ -0.01
USP40-202ENST00000409945 SSUH2Q9Y2M2 353 aa14.94□□□□□ -0.02
USP40-202ENST00000409945 SPDYE2BA6NHP3 402 aa14.9□□□□□ -0.02
USP40-202ENST00000409945 SPDYE6P0CI01 402 aa14.9□□□□□ -0.02
USP40-202ENST00000409945 SPDYE2Q495Y8 402 aa14.9□□□□□ -0.02
USP40-202ENST00000409945 PABPN1Q86U42 306 aaKnown RBP eCLIP14.87□□□□□ -0.03
USP40-202ENST00000409945 NISCHQ9Y2I1 1504 aa14.75□□□□□ -0.05
USP40-202ENST00000409945 SLC24A1O60721 1099 aa14.74□□□□□ -0.05
USP40-202ENST00000409945 PKD2Q13563 968 aa14.69□□□□□ -0.06
USP40-202ENST00000409945 KLHL34Q8N239 644 aa14.58□□□□□ -0.07
USP40-202ENST00000409945 STAG3Q9UJ98 1225 aa14.58□□□□□ -0.07
USP40-202ENST00000409945 PLCD3Q8N3E9 789 aa14.57□□□□□ -0.08
USP40-202ENST00000409945 MIER1Q8N108 512 aa14.56□□□□□ -0.08
USP40-202ENST00000409945 SPOCK2Q92563 424 aa14.51□□□□□ -0.09
USP40-202ENST00000409945 DCAF8L2P0C7V8 631 aa14.43□□□□□ -0.1
USP40-202ENST00000409945 AKT1S1Q96B36 256 aa14.39□□□□□ -0.11
USP40-202ENST00000409945 REM2Q8IYK8 340 aaPredicted RBP14.39□□□□□ -0.11
USP40-202ENST00000409945 RBM42Q9BTD8 480 aaKnown RBP14.36□□□□□ -0.11
USP40-202ENST00000409945 CLEC11AQ9Y240 323 aa14.36□□□□□ -0.11
USP40-202ENST00000409945 RGL2O15211 777 aa14.35□□□□□ -0.11
USP40-202ENST00000409945 ECM2O94769 699 aaPredicted RBP14.35□□□□□ -0.11
USP40-202ENST00000409945 SPDYE1Q8NFV5 336 aaPredicted RBP14.31□□□□□ -0.12
USP40-202ENST00000409945 NPM1P06748 294 aaKnown RBP eCLIP14.31□□□□□ -0.12
USP40-202ENST00000409945 CREBZFQ9NS37 354 aa14.29□□□□□ -0.12
USP40-202ENST00000409945 PLCB2Q00722 1185 aa14.27□□□□□ -0.12
USP40-202ENST00000409945 CIZ1Q9ULV3 898 aaPredicted RBP14.27□□□□□ -0.12
USP40-202ENST00000409945 MNX1P50219 401 aaPredicted RBP14.27□□□□□ -0.13
USP40-202ENST00000409945 PITPNM1O00562 1244 aa14.26□□□□□ -0.13
USP40-202ENST00000409945 NUBP1P53384 320 aa14.23□□□□□ -0.13
USP40-202ENST00000409945 PRR29P0C7W0 189 aa14.22□□□□□ -0.13
USP40-202ENST00000409945 PLEKHG5O94827 1062 aa14.2□□□□□ -0.14
USP40-202ENST00000409945 RNF25Q96BH1 459 aaPredicted RBP14.18□□□□□ -0.14
USP40-202ENST00000409945 ZBTB47Q9UFB7 747 aaPredicted RBP14.18□□□□□ -0.14
USP40-202ENST00000409945 RASEFQ8IZ41 740 aa14.11□□□□□ -0.15
USP40-202ENST00000409945 CHADLQ6NUI6 762 aa14.09□□□□□ -0.15
USP40-202ENST00000409945 HAP1P54257 671 aaPredicted RBP14.06□□□□□ -0.16
USP40-202ENST00000409945 DCAF8Q5TAQ9 597 aa14.03□□□□□ -0.16
USP40-202ENST00000409945 CHGAP10645 457 aaKnown RBP14.03□□□□□ -0.16
USP40-202ENST00000409945 BBXQ8WY36 941 aaPredicted RBP14.02□□□□□ -0.17
USP40-202ENST00000409945 PAXIP1Q6ZW49 1069 aaPredicted RBP13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 85.2 ms