RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 CCT8P50990 548 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 CCR5P51681 352 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 CLDN6P56747 220 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 YWHAZP63104 245 aaKnown RBP6.93□□□□□ -1.3
VPS53-213ENST00000572334 NUCB2P80303 420 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 ECT2LQ008S8 904 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 CENPCQ03188 943 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 BNIP3Q12983 259 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 PAK1Q13153 545 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 STIM1Q13586 685 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 CDH18Q13634 790 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 TEAD4Q15561 434 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 COL28A1Q2UY09 1125 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 C5orf22Q49AR2 442 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 SOWAHCQ53LP3 525 aaPredicted RBP6.93□□□□□ -1.3
VPS53-213ENST00000572334 FBXL22Q6P050 247 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 TRIM65Q6PJ69 517 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 SASS6Q6UVJ0 657 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 OLFML1Q6UWY5 402 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 C14orf80Q86SX3 495 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 CHSY1Q86X52 802 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 CREBRFQ8IUR6 639 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 DEFB106AQ8N104 65 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 SHC3Q92529 594 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 TSC1Q92574 1164 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 CRELD1Q96HD1 420 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 BBC3Q96PG8 261 aaPredicted RBP6.93□□□□□ -1.3
VPS53-213ENST00000572334 ELF4Q99607 663 aaPredicted RBP6.93□□□□□ -1.3
VPS53-213ENST00000572334 DDX50Q9BQ39 737 aaKnown RBP6.93□□□□□ -1.3
VPS53-213ENST00000572334 THAP9Q9H5L6 903 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 CCDC86Q9H6F5 360 aaKnown RBP6.93□□□□□ -1.3
VPS53-213ENST00000572334 SLTMQ9NWH9 1034 aaKnown RBP eCLIP6.93□□□□□ -1.3
VPS53-213ENST00000572334 PCDHGC3Q9UN70 934 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 RAXQ9Y2V3 346 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.93□□□□□ -1.3
VPS53-213ENST00000572334 HS3ST4Q9Y661 456 aa6.93□□□□□ -1.3
VPS53-213ENST00000572334 ANKRD36A6QL64 1941 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 A0A1B0GVM2 712 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 BICDL2A1A5D9 508 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 CCDC66A2RUB6 948 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 GOLGA6L4A6NEF3 574 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 TCAF2A6NFQ2 919 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 ATP9BO43861 1147 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 ZNF500O60304 480 aaPredicted RBP6.92□□□□□ -1.3
VPS53-213ENST00000572334 RTN2O75298 545 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 GRAP2O75791 330 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 RNASEH2AO75792 299 aaKnown RBP6.92□□□□□ -1.3
VPS53-213ENST00000572334 CNTN5O94779 1100 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 GNA14O95837 355 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 ADH1BP00325 375 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 MT-CO1P00395 513 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 APOEP02649 317 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 ERBB2P04626 1255 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 CTSLP07711 333 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 GLI1P08151 1106 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 PNMA6AP0CW24 399 aaPredicted RBP6.92□□□□□ -1.3
VPS53-213ENST00000572334 PON1P27169 355 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 CD38P28907 300 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 EPHA8P29322 1005 aaPredicted RBP6.92□□□□□ -1.3
VPS53-213ENST00000572334 RXRGP48443 463 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 ACADVLP49748 655 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 NXPH1P58417 271 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 TAS2R38P59533 333 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 ST8SIA6P61647 398 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 CYP4F3Q08477 520 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 CETN1Q12798 172 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 DNAJC3Q13217 504 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 SLC12A1Q13621 1099 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 AUHQ13825 339 aaKnown RBP6.92□□□□□ -1.3
VPS53-213ENST00000572334 ELAVL3Q14576 367 aaKnown RBP6.92□□□□□ -1.3
VPS53-213ENST00000572334 SUZ12Q15022 739 aaKnown RBP6.92□□□□□ -1.3
VPS53-213ENST00000572334 ARHGAP44Q17R89 818 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 PTPN20Q4JDL3 420 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 AGBL4Q5VU57 503 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 SFMBT2Q5VUG0 894 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 DHRS13Q6UX07 377 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 FAM183BPQ6ZVS7 135 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 SND1Q7KZF4 910 aaKnown RBP eCLIP6.92□□□□□ -1.3
VPS53-213ENST00000572334 PDZD3Q86UT5 571 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 PASD1Q8IV76 773 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 ATP6V0D2Q8N8Y2 350 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 NT5C3BQ969T7 300 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 VOPP1Q96AW1 172 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 PSMB7Q99436 277 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 FEM1AQ9BSK4 669 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 ACE2Q9BYF1 805 aaPredicted RBP6.92□□□□□ -1.3
VPS53-213ENST00000572334 ASNSD1Q9NWL6 643 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 DDIT4Q9NX09 232 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 APEX2Q9UBZ4 518 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 ZNF212Q9UDV6 495 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 HOOK1Q9UJC3 728 aaKnown RBP6.92□□□□□ -1.3
VPS53-213ENST00000572334 PPM1HQ9ULR3 514 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 NCKAP1Q9Y2A7 1128 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 SNX10Q9Y5X0 201 aa6.92□□□□□ -1.3
VPS53-213ENST00000572334 LRP4O75096 1905 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 ATMQ13315 3056 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 CFAP46Q8IYW2 2715 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 SYNJ2BP-COX16A0A087WUM0 186 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 A0A087WV48 116 aa6.91□□□□□ -1.3
VPS53-213ENST00000572334 TYW5A2RUC4 315 aaKnown RBP6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms