RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 PRR23CQ6ZRP0 262 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 TMEM179Q6ZVK1 233 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 ERO1BQ86YB8 467 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 ZC3H7AQ8IWR0 971 aaKnown RBP9.49□□□□□ -0.89
COL28A1-201ENST00000399429 PGAM4Q8N0Y7 254 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 SNX31Q8N9S9 440 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 S100ZQ8WXG8 99 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 DCPSQ96C86 337 aaKnown RBP9.49□□□□□ -0.89
COL28A1-201ENST00000399429 TUBGCP3Q96CW5 907 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 HNRNPABQ99729 332 aaKnown RBP9.49□□□□□ -0.89
COL28A1-201ENST00000399429 ZNF696Q9H7X3 374 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 SF3B1O75533 1304 aaKnown RBP eCLIP9.49□□□□□ -0.89
COL28A1-201ENST00000399429 CXorf49A8MYA2 514 aaPredicted RBP9.48□□□□□ -0.89
COL28A1-201ENST00000399429 SNAP91O60641 907 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 NTSR2O95665 410 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 PCNAP12004 261 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 KCNA2P16389 499 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 GRIA4P48058 902 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 GPC3P51654 580 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 CHRNB3Q05901 458 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 MRPL28Q13084 256 aaKnown RBP9.48□□□□□ -0.89
COL28A1-201ENST00000399429 KRR1Q13601 381 aaKnown RBP9.48□□□□□ -0.89
COL28A1-201ENST00000399429 NFYCQ13952 458 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 CAPRIN1Q14444 709 aaKnown RBP9.48□□□□□ -0.89
COL28A1-201ENST00000399429 PTPN20Q4JDL3 420 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 SLC9B1Q4ZJI4 515 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 FGD3Q5JSP0 725 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 NEK5Q6P3R8 708 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 DCDC5Q6ZRR9 648 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 SHCBP1Q8NEM2 672 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 HM13Q8TCT9 377 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 DMRTB1Q96MA1 342 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 PPP1R16BQ96T49 567 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 KCNK13Q9HB14 408 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 ITM2BQ9Y287 266 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 ROBO3Q96MS0 1386 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 POLRMTO00411 1230 aaKnown RBP9.48□□□□□ -0.89
COL28A1-201ENST00000399429 SEMA3DO95025 777 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 FCGR1AP12314 374 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 GPD1P21695 349 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 IL12AP29459 219 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 IFNA8P32881 189 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 RPL26P61254 145 aaKnown RBP9.48□□□□□ -0.89
COL28A1-201ENST00000399429 NOMO3P69849 1222 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 SMU1Q2TAY7 513 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 SPPL2CQ8IUH8 684 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 DDX51Q8N8A6 666 aaKnown RBP eCLIP9.48□□□□□ -0.89
COL28A1-201ENST00000399429 OR6P1Q8NGX9 317 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 NKD2Q969F2 451 aaPredicted RBP9.48□□□□□ -0.89
COL28A1-201ENST00000399429 IFT43Q96FT9 208 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 POLE4Q9NR33 117 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 KCNH7Q9NS40 1196 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 CAMSAP3Q9P1Y5 1249 aaPredicted RBP9.48□□□□□ -0.89
COL28A1-201ENST00000399429 BTBD3Q9Y2F9 522 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 PMF1-BGLAPU3KQ54 211 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 PEAK1Q9H792 1746 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 PABPN1LA6NDY0 278 aaKnown RBP9.48□□□□□ -0.89
COL28A1-201ENST00000399429 TFECO14948 347 aaPredicted RBP9.48□□□□□ -0.89
COL28A1-201ENST00000399429 MED26O95402 600 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 IL12RB1P42701 662 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 NDST2P52849 883 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 KCNK10P57789 538 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 VAC14Q08AM6 782 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 TRAF3Q13114 568 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 DMC1Q14565 340 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 TJAP1Q5JTD0 557 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 PRR23BQ6ZRT6 265 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 BBS12Q6ZW61 710 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 P3H2Q8IVL5 708 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 C8orf59Q8N0T1 100 aaPredicted RBP9.48□□□□□ -0.89
COL28A1-201ENST00000399429 METTL25Q8N6Q8 603 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 TTLL6Q8N841 843 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 TMC2Q8TDI7 906 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 NCSTNQ92542 709 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 OMDQ99983 421 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 TUT1Q9H6E5 874 aaKnown RBP9.48□□□□□ -0.89
COL28A1-201ENST00000399429 GIT1Q9Y2X7 761 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 CEPT1Q9Y6K0 416 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 MEGF6O75095 1541 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 ATP8B3O60423 1300 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 CHADO15335 359 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 HMGCRP04035 888 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 APOA4P06727 396 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 HSMCR30P0CW71 290 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 CSH1P0DML2 217 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 CSH2P0DML3 217 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 IDO1P14902 403 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 PTGER2P43116 358 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 PRKAA2P54646 552 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 GTF2H3Q13889 308 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 LSM12Q3MHD2 195 aaKnown RBP9.48□□□□□ -0.89
COL28A1-201ENST00000399429 OGFRL1Q5TC84 451 aaPredicted RBP9.48□□□□□ -0.89
COL28A1-201ENST00000399429 IQSEC1Q6DN90 963 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 TLK2Q86UE8 772 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 STARD8Q92502 1023 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 BIRC8Q96P09 236 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 ZNF358Q9NW07 568 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 ZDHHC7Q9NXF8 308 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 DPP3Q9NY33 737 aa9.48□□□□□ -0.89
COL28A1-201ENST00000399429 TMEM216Q9P0N5 145 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms