RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 NISCHQ9Y2I1 1504 aa15.38■□□□□ 0.05
COL28A1-201ENST00000399429 PELP1Q8IZL8 1130 aaKnown RBP15.35■□□□□ 0.05
COL28A1-201ENST00000399429 SUPT5HO00267 1087 aaKnown RBP15.33■□□□□ 0.05
COL28A1-201ENST00000399429 PCGF6Q9BYE7 350 aa15.3■□□□□ 0.04
COL28A1-201ENST00000399429 HRCP23327 699 aa15.17■□□□□ 0.02
COL28A1-201ENST00000399429 SHROOM4Q9ULL8 1493 aa15.03■□□□□ -0
COL28A1-201ENST00000399429 PPARGC1BQ86YN6 1023 aaKnown RBP15.03■□□□□ -0
COL28A1-201ENST00000399429 MYT1Q01538 1121 aa14.94□□□□□ -0.02
COL28A1-201ENST00000399429 DCAF8L2P0C7V8 631 aa14.83□□□□□ -0.04
COL28A1-201ENST00000399429 EHMT2Q96KQ7 1210 aa14.65□□□□□ -0.06
COL28A1-201ENST00000399429 CENPBP07199 599 aaPredicted RBP14.63□□□□□ -0.07
COL28A1-201ENST00000399429 ZEB1P37275 1124 aaPredicted RBP14.61□□□□□ -0.07
COL28A1-201ENST00000399429 TRIM26Q12899 539 aaPredicted RBP14.47□□□□□ -0.09
COL28A1-201ENST00000399429 YTHDC1Q96MU7 727 aaKnown RBP14.42□□□□□ -0.1
COL28A1-201ENST00000399429 SCAF1Q9H7N4 1312 aaKnown RBP14.39□□□□□ -0.11
COL28A1-201ENST00000399429 LOC105371045A0A1W2PR82 267 aa14.39□□□□□ -0.11
COL28A1-201ENST00000399429 CHIC1Q5VXU3 224 aa14.38□□□□□ -0.11
COL28A1-201ENST00000399429 FAM9AQ8IZU1 332 aaPredicted RBP14.37□□□□□ -0.11
COL28A1-201ENST00000399429 CCER1Q8TC90 406 aaPredicted RBP14.36□□□□□ -0.11
COL28A1-201ENST00000399429 GTF3C3Q9Y5Q9 886 aa14.34□□□□□ -0.11
COL28A1-201ENST00000399429 TTBK1Q5TCY1 1321 aaPredicted RBP14.28□□□□□ -0.12
COL28A1-201ENST00000399429 ACIN1Q9UKV3 1341 aaKnown RBP14.22□□□□□ -0.13
COL28A1-201ENST00000399429 DIEXFQ68CQ4 756 aaKnown RBP14.13□□□□□ -0.15
COL28A1-201ENST00000399429 NEUROD1Q13562 356 aa14.11□□□□□ -0.15
COL28A1-201ENST00000399429 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.06□□□□□ -0.16
COL28A1-201ENST00000399429 TRIM41Q8WV44 630 aa14.02□□□□□ -0.16
COL28A1-201ENST00000399429 ERICH6Q7L0X2 663 aa14□□□□□ -0.17
COL28A1-201ENST00000399429 MYO15BQ96JP2 1530 aa13.89□□□□□ -0.19
COL28A1-201ENST00000399429 DCAF1Q9Y4B6 1507 aa13.79□□□□□ -0.2
COL28A1-201ENST00000399429 NEFLP07196 543 aa13.77□□□□□ -0.21
COL28A1-201ENST00000399429 APLP2Q06481 763 aa13.72□□□□□ -0.21
COL28A1-201ENST00000399429 BCANQ96GW7 911 aa13.72□□□□□ -0.21
COL28A1-201ENST00000399429 ZNF316A6NFI3 1004 aaPredicted RBP13.68□□□□□ -0.22
COL28A1-201ENST00000399429 BCL11AQ9H165 835 aa13.68□□□□□ -0.22
COL28A1-201ENST00000399429 HNRNPUL2Q1KMD3 747 aaKnown RBP13.62□□□□□ -0.23
COL28A1-201ENST00000399429 RANGAP1P46060 587 aaPredicted RBP13.6□□□□□ -0.23
COL28A1-201ENST00000399429 ANP32EQ9BTT0 268 aa13.58□□□□□ -0.24
COL28A1-201ENST00000399429 UBTFP17480 764 aaKnown RBP13.57□□□□□ -0.24
COL28A1-201ENST00000399429 MIER1Q8N108 512 aa13.53□□□□□ -0.24
COL28A1-201ENST00000399429 CCDC180Q9P1Z9 1646 aa13.47□□□□□ -0.25
COL28A1-201ENST00000399429 FKBP8Q14318 412 aa13.39□□□□□ -0.27
COL28A1-201ENST00000399429 CSRNP3Q8WYN3 585 aa13.38□□□□□ -0.27
COL28A1-201ENST00000399429 RTL5Q5HYW3 569 aaPredicted RBP13.34□□□□□ -0.27
COL28A1-201ENST00000399429 CLSPNQ9HAW4 1339 aa13.34□□□□□ -0.27
COL28A1-201ENST00000399429 SUPT16HQ9Y5B9 1047 aaKnown RBP13.33□□□□□ -0.28
COL28A1-201ENST00000399429 ITGAEP38570 1179 aa13.3□□□□□ -0.28
COL28A1-201ENST00000399429 CDK11AQ9UQ88 783 aaPredicted RBP13.3□□□□□ -0.28
COL28A1-201ENST00000399429 TSHZ2Q9NRE2 1034 aa13.24□□□□□ -0.29
COL28A1-201ENST00000399429 NBR1Q14596 966 aa13.2□□□□□ -0.3
COL28A1-201ENST00000399429 EIF5BO60841 1220 aaKnown RBP13.19□□□□□ -0.3
COL28A1-201ENST00000399429 TRIM52Q96A61 297 aa13.14□□□□□ -0.31
COL28A1-201ENST00000399429 RBM19Q9Y4C8 960 aaKnown RBP13.11□□□□□ -0.31
COL28A1-201ENST00000399429 CNGB1Q14028 1251 aaPredicted RBP13.1□□□□□ -0.31
COL28A1-201ENST00000399429 MYT1LQ9UL68 1186 aa13.1□□□□□ -0.31
COL28A1-201ENST00000399429 ANP32CO43423 234 aa13.09□□□□□ -0.31
COL28A1-201ENST00000399429 ATP1B4Q9UN42 357 aaPredicted RBP13.09□□□□□ -0.31
COL28A1-201ENST00000399429 IRX6P78412 446 aaPredicted RBP13.08□□□□□ -0.32
COL28A1-201ENST00000399429 DAXXQ9UER7 740 aaPredicted RBP13.07□□□□□ -0.32
COL28A1-201ENST00000399429 DDX10Q13206 875 aaKnown RBP13.06□□□□□ -0.32
COL28A1-201ENST00000399429 RTN4Q9NQC3 1192 aaKnown RBP13.05□□□□□ -0.32
COL28A1-201ENST00000399429 PRKCSHP14314 528 aaPredicted RBP13.05□□□□□ -0.32
COL28A1-201ENST00000399429 DEKP35659 375 aaKnown RBP13.02□□□□□ -0.32
COL28A1-201ENST00000399429 ANP32AP39687 249 aaKnown RBP13.01□□□□□ -0.33
COL28A1-201ENST00000399429 NPM2Q86SE8 214 aaKnown RBP12.98□□□□□ -0.33
COL28A1-201ENST00000399429 HNRNPUQ00839 825 aaKnown RBP eCLIP12.96□□□□□ -0.33
COL28A1-201ENST00000399429 POLR3GLQ9BT43 218 aa12.94□□□□□ -0.34
COL28A1-201ENST00000399429 ZCCHC6Q5VYS8 1495 aaKnown RBP12.93□□□□□ -0.34
COL28A1-201ENST00000399429 HIRIP3Q9BW71 556 aaPredicted RBP12.91□□□□□ -0.34
COL28A1-201ENST00000399429 ZBTB47Q9UFB7 747 aaPredicted RBP12.91□□□□□ -0.34
COL28A1-201ENST00000399429 CCDC136Q96JN2 1154 aa12.9□□□□□ -0.34
COL28A1-201ENST00000399429 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.89□□□□□ -0.35
COL28A1-201ENST00000399429 FAM50AQ14320 339 aaKnown RBP12.84□□□□□ -0.35
COL28A1-201ENST00000399429 KCNH8Q96L42 1107 aa12.83□□□□□ -0.36
COL28A1-201ENST00000399429 ANO8Q9HCE9 1232 aaPredicted RBP12.83□□□□□ -0.36
COL28A1-201ENST00000399429 NOP58Q9Y2X3 529 aaKnown RBP12.82□□□□□ -0.36
COL28A1-201ENST00000399429 FAM9BQ8IZU0 186 aa12.79□□□□□ -0.36
COL28A1-201ENST00000399429 CEP162Q5TB80 1403 aa12.77□□□□□ -0.36
COL28A1-201ENST00000399429 GLIPR1L2Q4G1C9 344 aa12.77□□□□□ -0.37
COL28A1-201ENST00000399429 B4GALNT3Q6L9W6 998 aa12.76□□□□□ -0.37
COL28A1-201ENST00000399429 LAS1LQ9Y4W2 734 aaKnown RBP12.73□□□□□ -0.37
COL28A1-201ENST00000399429 NEFMP07197 916 aa12.7□□□□□ -0.38
COL28A1-201ENST00000399429 PPP4R2Q9NY27 417 aa12.7□□□□□ -0.38
COL28A1-201ENST00000399429 SALL2Q9Y467 1007 aaPredicted RBP12.68□□□□□ -0.38
COL28A1-201ENST00000399429 ARXQ96QS3 562 aa12.67□□□□□ -0.38
COL28A1-201ENST00000399429 SENP3-EIF4A1A0A087X0R7 540 aa12.65□□□□□ -0.38
COL28A1-201ENST00000399429 FANCIQ9NVI1 1328 aa12.65□□□□□ -0.38
COL28A1-201ENST00000399429 RSF1Q96T23 1441 aaPredicted RBP12.65□□□□□ -0.39
COL28A1-201ENST00000399429 ERICH6BQ5W0A0 696 aa12.64□□□□□ -0.39
COL28A1-201ENST00000399429 MSH5O43196 834 aa12.63□□□□□ -0.39
COL28A1-201ENST00000399429 MRS2Q9HD23 443 aa12.63□□□□□ -0.39
COL28A1-201ENST00000399429 SIN3AQ96ST3 1273 aa12.6□□□□□ -0.39
COL28A1-201ENST00000399429 TONSLQ96HA7 1378 aa12.6□□□□□ -0.39
COL28A1-201ENST00000399429 TNIKQ9UKE5 1360 aa12.58□□□□□ -0.4
COL28A1-201ENST00000399429 CLIP1P30622 1438 aa12.57□□□□□ -0.4
COL28A1-201ENST00000399429 IL27Q8NEV9 243 aa12.57□□□□□ -0.4
COL28A1-201ENST00000399429 PPM1GO15355 546 aaPredicted RBP12.55□□□□□ -0.4
COL28A1-201ENST00000399429 CCER2I3L3R5 266 aa12.54□□□□□ -0.4
COL28A1-201ENST00000399429 ZNF326Q5BKZ1 582 aaKnown RBP12.54□□□□□ -0.4
COL28A1-201ENST00000399429 IPO9Q96P70 1041 aaKnown RBP12.53□□□□□ -0.4
COL28A1-201ENST00000399429 NAP1L5Q96NT1 182 aaPredicted RBP12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms