RNA–Protein interactions for RNA: YML031W

NDC1, Transcript of Subunit of the transmembrane ring of the nuclear pore complex (NPC), yeast

Gene NDC1, Length 1,968 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NDC1	YML031W	SPT21	P35209	758 aa		6.31	□□□□□ -1.4
NDC1	YML031W	SNU71	P53207	620 aa	Known RBP	6.31	□□□□□ -1.4
NDC1	YML031W	BOI1	P38041	980 aa	Known RBP	6.3	□□□□□ -1.4
NDC1	YML031W	LDH1	P38139	375 aa		6.3	□□□□□ -1.4
NDC1	YML031W	CLA4	P48562	842 aa		6.3	□□□□□ -1.4
NDC1	YML031W	PIP2	P52960	996 aa		6.3	□□□□□ -1.4
NDC1	YML031W	RPN7	Q06103	429 aa	Known RBP	6.3	□□□□□ -1.4
NDC1	YML031W	CYB2	P00175	591 aa		6.29	□□□□□ -1.4
NDC1	YML031W	YVH1	Q02256	364 aa	Known RBP	6.29	□□□□□ -1.4
NDC1	YML031W	SUB2	Q07478	446 aa	Known RBP	6.29	□□□□□ -1.4
NDC1	YML031W	YDL124W	Q07551	312 aa	Known RBP	6.29	□□□□□ -1.4
NDC1	YML031W	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	6.29	□□□□□ -1.4	not detected
NDC1	YML031W	SRS2	P12954	1174 aa		6.28	□□□□□ -1.4
NDC1	YML031W	HGH1	P48362	394 aa	Known RBP	6.28	□□□□□ -1.4
NDC1	YML031W	CDC45	Q08032	650 aa		6.28	□□□□□ -1.4
NDC1	YML031W	ICL2	Q12031	575 aa		6.28	□□□□□ -1.4
NDC1	YML031W	DAL5	P15365	543 aa		6.27	□□□□□ -1.41
NDC1	YML031W	DIT2	P21595	489 aa		6.27	□□□□□ -1.41
NDC1	YML031W	CST26	P38226	397 aa		6.27	□□□□□ -1.41
NDC1	YML031W	YJL007C	P47080	104 aa		6.27	□□□□□ -1.41
NDC1	YML031W	KEL3	Q08979	651 aa	Predicted RBP	6.27	□□□□□ -1.41
NDC1	YML031W	MPH3	P0CE00	602 aa		6.26	□□□□□ -1.41
NDC1	YML031W	GCD7	P32502	381 aa	Predicted RBP	6.26	□□□□□ -1.41
NDC1	YML031W	GRX7	P38068	203 aa		6.26	□□□□□ -1.41
NDC1	YML031W	YNG2	P38806	282 aa	Known RBP	6.26	□□□□□ -1.41
NDC1	YML031W	EAR1	Q03212	550 aa		6.26	□□□□□ -1.41
NDC1	YML031W	ECM30	Q06673	1274 aa		6.26	□□□□□ -1.41
NDC1	YML031W	PER1	P25625	357 aa		6.26	□□□□□ -1.41
NDC1	YML031W	SPB4	P25808	606 aa	Predicted RBP	6.26	□□□□□ -1.41
NDC1	YML031W	MXR1	P40029	184 aa		6.26	□□□□□ -1.41
NDC1	YML031W	YOR131C	Q12486	218 aa		6.26	□□□□□ -1.41
NDC1	YML031W	NCB2	Q92317	146 aa		6.26	□□□□□ -1.41
NDC1	YML031W	ERG12	P07277	443 aa		6.25	□□□□□ -1.41
NDC1	YML031W	PKC1	P24583	1151 aa		6.25	□□□□□ -1.41
NDC1	YML031W	WHI3	P34761	661 aa	Known RBP	6.25	□□□□□ -1.41
NDC1	YML031W	GEF1	P37020	779 aa		6.25	□□□□□ -1.41
NDC1	YML031W	FIR1	P40020	876 aa		6.25	□□□□□ -1.41
NDC1	YML031W	YIL092W	P40497	633 aa		6.25	□□□□□ -1.41
NDC1	YML031W	SPO1	P53541	631 aa		6.25	□□□□□ -1.41
NDC1	YML031W	LAP2	Q10740	671 aa		6.25	□□□□□ -1.41
NDC1	YML031W	EUG1	P32474	517 aa		6.24	□□□□□ -1.41
NDC1	YML031W	FUN12	P39730	1002 aa	Known RBP	6.24	□□□□□ -1.41
NDC1	YML031W	TIF4631	P39935	952 aa	Known RBP	6.24	□□□□□ -1.41
NDC1	YML031W	YFL040W	P43562	540 aa		6.24	□□□□□ -1.41
NDC1	YML031W	YRB30	P53107	440 aa	Predicted RBP	6.24	□□□□□ -1.41
NDC1	YML031W	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	6.24	□□□□□ -1.41	not detected
NDC1	YML031W	UBX5	Q06682	500 aa		6.24	□□□□□ -1.41
NDC1	YML031W	MET7	Q08645	548 aa		6.24	□□□□□ -1.41
NDC1	YML031W	RVB2	Q12464	471 aa	Known RBP	6.24	□□□□□ -1.41
NDC1	YML031W	DLD1	P32891	587 aa		6.24	□□□□□ -1.41
NDC1	YML031W	NPL4	P33755	580 aa		6.24	□□□□□ -1.41
NDC1	YML031W	TFA1	P36100	482 aa		6.24	□□□□□ -1.41
NDC1	YML031W	AIM21	P40563	679 aa		6.24	□□□□□ -1.41
NDC1	YML031W	KRS1	P15180	591 aa	Known RBP	6.23	□□□□□ -1.41
NDC1	YML031W	VMA2	P16140	517 aa	Known RBP	6.23	□□□□□ -1.41
NDC1	YML031W	PRE10	P21242	288 aa	Known RBP RIP-Chip data	6.23	□□□□□ -1.41	not detected
NDC1	YML031W	UIP5	P36137	443 aa		6.23	□□□□□ -1.41
NDC1	YML031W	YPL034W	Q03083	165 aa		6.23	□□□□□ -1.41
NDC1	YML031W	YML037C	Q03703	340 aa		6.23	□□□□□ -1.41
NDC1	YML031W	YPL260W	Q08977	551 aa		6.23	□□□□□ -1.41
NDC1	YML031W	SUT2	Q12286	268 aa		6.23	□□□□□ -1.41
NDC1	YML031W	PRE8	P23639	250 aa		6.22	□□□□□ -1.41
NDC1	YML031W	GPB2	P39717	880 aa		6.22	□□□□□ -1.41
NDC1	YML031W	BRE5	P53741	515 aa	Known RBP	6.22	□□□□□ -1.41
NDC1	YML031W	FMP30	Q02883	468 aa		6.22	□□□□□ -1.41
NDC1	YML031W	YJR107W	P47145	328 aa		6.22	□□□□□ -1.41
NDC1	YML031W	YGL242C	P53066	181 aa		6.22	□□□□□ -1.41
NDC1	YML031W	YAF9	P53930	226 aa		6.22	□□□□□ -1.41
NDC1	YML031W	MDM20	Q12387	796 aa	Known RBP	6.22	□□□□□ -1.41
NDC1	YML031W	SRM1	P21827	482 aa		6.21	□□□□□ -1.42
NDC1	YML031W	MRPL32	P25348	183 aa		6.21	□□□□□ -1.42
NDC1	YML031W	YGL015C	P33199	130 aa		6.21	□□□□□ -1.42
NDC1	YML031W	KTR3	P38130	404 aa	Predicted RBP	6.21	□□□□□ -1.42
NDC1	YML031W	IOC3	P43596	787 aa		6.21	□□□□□ -1.42
NDC1	YML031W	MAM3	Q12296	706 aa		6.21	□□□□□ -1.42
NDC1	YML031W	RGT1	P32862	1170 aa		6.2	□□□□□ -1.42
NDC1	YML031W	AFG3	P39925	761 aa		6.2	□□□□□ -1.42
NDC1	YML031W	RAD2	P07276	1031 aa		6.2	□□□□□ -1.42
NDC1	YML031W	IRC8	P47046	822 aa		6.2	□□□□□ -1.42
NDC1	YML031W	ILV3	P39522	585 aa	Known RBP	6.19	□□□□□ -1.42
NDC1	YML031W	MLC1	P53141	149 aa		6.19	□□□□□ -1.42
NDC1	YML031W	DUS4	Q06063	367 aa		6.19	□□□□□ -1.42
NDC1	YML031W	SKG3	Q06315	1026 aa		6.19	□□□□□ -1.42
NDC1	YML031W	ECM29	P38737	1868 aa		6.19	□□□□□ -1.42
NDC1	YML031W	TUS1	Q06412	1307 aa		6.19	□□□□□ -1.42
NDC1	YML031W	CDC19	P00549	500 aa	Known RBP	6.18	□□□□□ -1.42
NDC1	YML031W	YKR018C	P36114	725 aa		6.18	□□□□□ -1.42
NDC1	YML031W	YMR147W	P40218	223 aa	Known RBP	6.18	□□□□□ -1.42
NDC1	YML031W	ENP2	P48234	707 aa	Known RBP	6.18	□□□□□ -1.42
NDC1	YML031W	NOT3	P06102	836 aa	Known RBP	6.18	□□□□□ -1.42
NDC1	YML031W	KSP1	P38691	1029 aa	Known RBP	6.18	□□□□□ -1.42
NDC1	YML031W	TOM71	P38825	639 aa	Known RBP	6.18	□□□□□ -1.42
NDC1	YML031W	EPS1	P40557	701 aa		6.18	□□□□□ -1.42
NDC1	YML031W	SOL4	P53315	255 aa		6.18	□□□□□ -1.42
NDC1	YML031W	ALO1	P54783	526 aa	Known RBP	6.18	□□□□□ -1.42
NDC1	YML031W	PDR18	P53756	1333 aa		6.17	□□□□□ -1.42
NDC1	YML031W	SRP40	P32583	406 aa	Predicted RBP	6.17	□□□□□ -1.42
NDC1	YML031W	BCS1	P32839	456 aa		6.17	□□□□□ -1.42
NDC1	YML031W	ALD6	P54115	500 aa	Known RBP	6.17	□□□□□ -1.42
NDC1	YML031W	KAR5	Q04746	504 aa		6.17	□□□□□ -1.42

Retrieved 100 of 5,963 RNA–protein pairs in 11.2 ms