RNA–Protein interactions for RNA: YFR002W

NIC96, Transcript of Linker nucleoporin component of the nuclear pore complex (NPC), yeast

Gene NIC96, Length 2,520 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NIC96	YFR002W	MCA1	Q08601	432 aa		4.31	□□□□□ -1.72
NIC96	YFR002W	MNL2	Q12205	849 aa		4.31	□□□□□ -1.72
NIC96	YFR002W	RRM3	P38766	723 aa		4.3	□□□□□ -1.72
NIC96	YFR002W	GIP2	P40036	548 aa		4.3	□□□□□ -1.72
NIC96	YFR002W	TED1	P40533	473 aa		4.3	□□□□□ -1.72
NIC96	YFR002W	CTR9	P89105	1077 aa		4.3	□□□□□ -1.72
NIC96	YFR002W	GAS5	Q08193	484 aa		4.3	□□□□□ -1.72
NIC96	YFR002W	SOG2	Q08817	791 aa		4.3	□□□□□ -1.72
NIC96	YFR002W	RSC4	Q02206	625 aa		4.3	□□□□□ -1.72
NIC96	YFR002W	TY4B-P	A0A0B7P3V8	1104 aa		4.29	□□□□□ -1.72
NIC96	YFR002W	PYC2	P32327	1180 aa	Known RBP	4.29	□□□□□ -1.72
NIC96	YFR002W	AMN1	P38285	549 aa	Predicted RBP	4.29	□□□□□ -1.72
NIC96	YFR002W	TY4A-H	Q6Q5P6	413 aa		4.29	□□□□□ -1.72
NIC96	YFR002W	FRT1	Q99332	602 aa		4.29	□□□□□ -1.72
NIC96	YFR002W	COB	P00163	385 aa		4.29	□□□□□ -1.72
NIC96	YFR002W	AI3	P03877	415 aa		4.28	□□□□□ -1.72
NIC96	YFR002W	HVG1	P0CE11	249 aa		4.28	□□□□□ -1.72
NIC96	YFR002W	TAT1	P38085	619 aa		4.28	□□□□□ -1.72
NIC96	YFR002W	GLO4	Q12320	285 aa		4.28	□□□□□ -1.72
NIC96	YFR002W	SSF1	P38789	453 aa	Predicted RBP	4.27	□□□□□ -1.73
NIC96	YFR002W	GUP1	P53154	560 aa		4.27	□□□□□ -1.73
NIC96	YFR002W	NUT2	Q06213	157 aa		4.27	□□□□□ -1.73
NIC96	YFR002W	GPI13	Q07830	1017 aa		4.27	□□□□□ -1.73
NIC96	YFR002W	PAN5	P38787	379 aa		4.27	□□□□□ -1.73
NIC96	YFR002W	YNR065C	P53751	1116 aa		4.27	□□□□□ -1.73
NIC96	YFR002W	YNL011C	P53980	444 aa		4.27	□□□□□ -1.73
NIC96	YFR002W	DUR3	P33413	735 aa		4.26	□□□□□ -1.73
NIC96	YFR002W	YJR124C	P47159	448 aa		4.26	□□□□□ -1.73
NIC96	YFR002W	SFA1	P32771	386 aa		4.26	□□□□□ -1.73
NIC96	YFR002W	LSB6	P42951	607 aa		4.26	□□□□□ -1.73
NIC96	YFR002W	CDC55	Q00362	526 aa		4.26	□□□□□ -1.73
NIC96	YFR002W	TY1A-NL1	Q12391	440 aa	Known RBP	4.26	□□□□□ -1.73
NIC96	YFR002W	SAC7	P17121	654 aa		4.25	□□□□□ -1.73
NIC96	YFR002W	POL5	P39985	1022 aa	Known RBP	4.25	□□□□□ -1.73
NIC96	YFR002W	YPL034W	Q03083	165 aa		4.25	□□□□□ -1.73
NIC96	YFR002W	LEM3	P42838	414 aa		4.24	□□□□□ -1.73
NIC96	YFR002W	ARI1	P53111	347 aa	Known RBP	4.24	□□□□□ -1.73
NIC96	YFR002W	HAS1	Q03532	505 aa	Known RBP	4.24	□□□□□ -1.73
NIC96	YFR002W	BSC2	Q05611	235 aa		4.24	□□□□□ -1.73
NIC96	YFR002W	PGM1	P33401	570 aa	Known RBP	4.24	□□□□□ -1.73
NIC96	YFR002W	RIM11	P38615	370 aa		4.24	□□□□□ -1.73
NIC96	YFR002W	YHL050C	P38721	697 aa		4.24	□□□□□ -1.73
NIC96	YFR002W	YHR219W	P38900	624 aa		4.24	□□□□□ -1.73
NIC96	YFR002W	DSE4	P53753	1117 aa		4.23	□□□□□ -1.73
NIC96	YFR002W	CMR1	Q12510	522 aa	Known RBP	4.23	□□□□□ -1.73
NIC96	YFR002W	FLP1	P03870	423 aa		4.23	□□□□□ -1.73
NIC96	YFR002W	NEO1	P40527	1151 aa		4.23	□□□□□ -1.73
NIC96	YFR002W	MSH6	Q03834	1242 aa		4.23	□□□□□ -1.73
NIC96	YFR002W	FET4	P40988	552 aa		4.22	□□□□□ -1.73
NIC96	YFR002W	SPO71	Q03868	1245 aa		4.22	□□□□□ -1.73
NIC96	YFR002W	NPR1	P22211	790 aa		4.22	□□□□□ -1.73
NIC96	YFR002W	ERS1	P17261	260 aa		4.21	□□□□□ -1.74
NIC96	YFR002W	PRP5	P21372	849 aa	Predicted RBP	4.21	□□□□□ -1.74
NIC96	YFR002W	YHL008C	P38750	627 aa		4.21	□□□□□ -1.74
NIC96	YFR002W	ELG1	Q12050	791 aa		4.21	□□□□□ -1.74
NIC96	YFR002W	RSC6	P25632	483 aa		4.21	□□□□□ -1.74
NIC96	YFR002W	SAP155	P43612	1002 aa		4.2	□□□□□ -1.74
NIC96	YFR002W	INP54	Q08227	384 aa	Known RBP	4.2	□□□□□ -1.74
NIC96	YFR002W	REC8	Q12188	680 aa		4.2	□□□□□ -1.74
NIC96	YFR002W	MAE1	P36013	669 aa	Known RBP	4.2	□□□□□ -1.74
NIC96	YFR002W	ECM2	P38241	364 aa	Known RBP	4.2	□□□□□ -1.74
NIC96	YFR002W	NCE103	P53615	221 aa		4.2	□□□□□ -1.74
NIC96	YFR002W	INO80	P53115	1489 aa		4.19	□□□□□ -1.74
NIC96	YFR002W	PPX1	P38698	397 aa		4.19	□□□□□ -1.74
NIC96	YFR002W	STM1	P39015	273 aa	Known RBP	4.19	□□□□□ -1.74
NIC96	YFR002W	NUT1	P53114	1132 aa		4.19	□□□□□ -1.74
NIC96	YFR002W	NOC3	Q07896	663 aa	Predicted RBP	4.19	□□□□□ -1.74
NIC96	YFR002W	MSC6	Q08818	692 aa	Known RBP	4.19	□□□□□ -1.74
NIC96	YFR002W	WHI5	Q12416	295 aa		4.19	□□□□□ -1.74
NIC96	YFR002W	MET4	P32389	672 aa		4.19	□□□□□ -1.74
NIC96	YFR002W	HTS1	P07263	546 aa	Known RBP	4.18	□□□□□ -1.74
NIC96	YFR002W	SBP1	P10080	294 aa	Known RBP	4.18	□□□□□ -1.74
NIC96	YFR002W	PHO4	P07270	312 aa	Known RBP	4.18	□□□□□ -1.74
NIC96	YFR002W	KIP3	P53086	805 aa	Known RBP	4.18	□□□□□ -1.74
NIC96	YFR002W	SEN54	Q02825	467 aa	Predicted RBP	4.18	□□□□□ -1.74
NIC96	YFR002W	YIG1	Q08956	461 aa		4.18	□□□□□ -1.74
NIC96	YFR002W	NAM7	P30771	971 aa	Known RBP	4.17	□□□□□ -1.74
NIC96	YFR002W	SAM37	P50110	327 aa		4.17	□□□□□ -1.74
NIC96	YFR002W	YAF9	P53930	226 aa		4.17	□□□□□ -1.74
NIC96	YFR002W	MON1	P53129	644 aa		4.17	□□□□□ -1.74
NIC96	YFR002W	PMT7	Q06644	662 aa		4.17	□□□□□ -1.74
NIC96	YFR002W	YLR122C	Q12312	125 aa		4.17	□□□□□ -1.74
NIC96	YFR002W	SAF1	P38352	637 aa		4.16	□□□□□ -1.74
NIC96	YFR002W	IPL1	P38991	367 aa		4.16	□□□□□ -1.74
NIC96	YFR002W	AKR1	P39010	764 aa		4.16	□□□□□ -1.74
NIC96	YFR002W	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	4.16	□□□□□ -1.74	not detected
NIC96	YFR002W	COQ2	P32378	372 aa		4.16	□□□□□ -1.74
NIC96	YFR002W	FAR11	P53917	953 aa		4.16	□□□□□ -1.74
NIC96	YFR002W	CIC1	P38779	376 aa	Known RBP	4.15	□□□□□ -1.74
NIC96	YFR002W	GCV1	P48015	400 aa		4.15	□□□□□ -1.74
NIC96	YFR002W	YCS4	Q06156	1176 aa		4.15	□□□□□ -1.74
NIC96	YFR002W	TY1A-LR4	P0C2I8	440 aa	Known RBP	4.15	□□□□□ -1.75
NIC96	YFR002W	TY1A-DR6	P0CX70	440 aa		4.15	□□□□□ -1.75
NIC96	YFR002W	TY1A-ER1	P0CX71	440 aa		4.15	□□□□□ -1.75
NIC96	YFR002W	TY1A-LR2	P0CX72	440 aa		4.15	□□□□□ -1.75
NIC96	YFR002W	TY1A-PL	P0CX73	440 aa		4.15	□□□□□ -1.75
NIC96	YFR002W	TY1A-JR1	P0CX74	440 aa		4.15	□□□□□ -1.75
NIC96	YFR002W	TY1A-LR3	P0CX75	440 aa		4.15	□□□□□ -1.75
NIC96	YFR002W	TY1A-ML2	P0CX76	440 aa		4.15	□□□□□ -1.75
NIC96	YFR002W	MCM5	P29496	775 aa	Known RBP	4.15	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 55.2 ms