RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 SCAMP5Q8TAC9 235 aa4.65□□□□□ -1.67
VPS29-202ENST00000447578 NELL2Q99435 816 aa4.65□□□□□ -1.67
VPS29-202ENST00000447578 MESP1Q9BRJ9 268 aa4.65□□□□□ -1.67
VPS29-202ENST00000447578 RTKNQ9BST9 563 aa4.65□□□□□ -1.67
VPS29-202ENST00000447578 DDX23Q9BUQ8 820 aaKnown RBP4.65□□□□□ -1.67
VPS29-202ENST00000447578 SEMA4CQ9C0C4 833 aa4.65□□□□□ -1.67
VPS29-202ENST00000447578 TTYH3Q9C0H2 523 aa4.65□□□□□ -1.67
VPS29-202ENST00000447578 PABPC3Q9H361 631 aaKnown RBP4.65□□□□□ -1.67
VPS29-202ENST00000447578 FAM83DQ9H4H8 585 aa4.65□□□□□ -1.67
VPS29-202ENST00000447578 CA14Q9ULX7 337 aa4.65□□□□□ -1.67
VPS29-202ENST00000447578 NUDCQ9Y266 331 aa4.65□□□□□ -1.67
VPS29-202ENST00000447578 DTNAQ9Y4J8 743 aa4.65□□□□□ -1.67
VPS29-202ENST00000447578 BRD4O60885 1362 aaPredicted RBP4.65□□□□□ -1.67
VPS29-202ENST00000447578 GPRASP1Q5JY77 1395 aa4.65□□□□□ -1.67
VPS29-202ENST00000447578 KTN1Q86UP2 1357 aaKnown RBP4.65□□□□□ -1.67
VPS29-202ENST00000447578 TRPM1Q7Z4N2 1603 aa4.64□□□□□ -1.67
VPS29-202ENST00000447578 FANCAO15360 1455 aa4.64□□□□□ -1.67
VPS29-202ENST00000447578 ATP10AO60312 1499 aa4.64□□□□□ -1.67
VPS29-202ENST00000447578 LMTK3Q96Q04 1460 aa4.64□□□□□ -1.67
VPS29-202ENST00000447578 KCNAB3O43448 404 aa4.64□□□□□ -1.67
VPS29-202ENST00000447578 TIMM44O43615 452 aa4.64□□□□□ -1.67
VPS29-202ENST00000447578 RGS10O43665 173 aa4.64□□□□□ -1.67
VPS29-202ENST00000447578 RASAL1O95294 804 aa4.64□□□□□ -1.67
VPS29-202ENST00000447578 RXRAP19793 462 aa4.64□□□□□ -1.67
VPS29-202ENST00000447578 PNLIPRP1P54315 467 aa4.64□□□□□ -1.67
VPS29-202ENST00000447578 PRKAA2P54646 552 aa4.64□□□□□ -1.67
VPS29-202ENST00000447578 TCF15Q12870 199 aa4.64□□□□□ -1.67
VPS29-202ENST00000447578 SLC12A1Q13621 1099 aa4.64□□□□□ -1.67
VPS29-202ENST00000447578 BOP1Q14137 746 aaKnown RBP4.64□□□□□ -1.67
VPS29-202ENST00000447578 EFR3AQ14156 821 aa4.64□□□□□ -1.67
VPS29-202ENST00000447578 MGAT5BQ3V5L5 792 aa4.64□□□□□ -1.67
VPS29-202ENST00000447578 CC2D1BQ5T0F9 858 aaKnown RBP4.64□□□□□ -1.67
VPS29-202ENST00000447578 CACHD1Q5VU97 1274 aa4.64□□□□□ -1.67
VPS29-202ENST00000447578 SLC29A4Q7RTT9 530 aa4.64□□□□□ -1.67
VPS29-202ENST00000447578 PPP1R32Q7Z5V6 425 aa4.64□□□□□ -1.67
VPS29-202ENST00000447578 SLC44A2Q8IWA5 706 aaPredicted RBP4.64□□□□□ -1.67
VPS29-202ENST00000447578 FAM109AQ8N4B1 249 aa4.64□□□□□ -1.67
VPS29-202ENST00000447578 OR6Y1Q8NGX8 325 aa4.64□□□□□ -1.67
VPS29-202ENST00000447578 CSGALNACT1Q8TDX6 532 aa4.64□□□□□ -1.67
VPS29-202ENST00000447578 DENND1AQ8TEH3 1009 aa4.64□□□□□ -1.67
VPS29-202ENST00000447578 HERVK_113Q902F9 699 aa4.64□□□□□ -1.67
VPS29-202ENST00000447578 PPP2R3CQ969Q6 453 aa4.64□□□□□ -1.67
VPS29-202ENST00000447578 GRAMD1AQ96CP6 724 aa4.64□□□□□ -1.67
VPS29-202ENST00000447578 HVCN1Q96D96 273 aa4.64□□□□□ -1.67
VPS29-202ENST00000447578 COG8Q96MW5 612 aa4.64□□□□□ -1.67
VPS29-202ENST00000447578 SLC46A1Q96NT5 459 aa4.64□□□□□ -1.67
VPS29-202ENST00000447578 TRAPPC9Q96Q05 1148 aa4.64□□□□□ -1.67
VPS29-202ENST00000447578 SPRTNQ9H040 489 aaPredicted RBP4.64□□□□□ -1.67
VPS29-202ENST00000447578 OSBPL5Q9H0X9 879 aaPredicted RBP4.64□□□□□ -1.67
VPS29-202ENST00000447578 TP63Q9H3D4 680 aaPredicted RBP4.64□□□□□ -1.67
VPS29-202ENST00000447578 JMJD4Q9H9V9 463 aa4.64□□□□□ -1.67
VPS29-202ENST00000447578 PRDM8Q9NQV8 689 aa4.64□□□□□ -1.67
VPS29-202ENST00000447578 HELLSQ9NRZ9 838 aa4.64□□□□□ -1.67
VPS29-202ENST00000447578 BCCIPQ9P287 314 aaKnown RBP eCLIP4.64□□□□□ -1.67
VPS29-202ENST00000447578 HESX1Q9UBX0 185 aa4.64□□□□□ -1.67
VPS29-202ENST00000447578 RABGAP1Q9Y3P9 1069 aa4.64□□□□□ -1.67
VPS29-202ENST00000447578 AFG3L2Q9Y4W6 797 aa4.64□□□□□ -1.67
VPS29-202ENST00000447578 UTP18Q9Y5J1 556 aaKnown RBP eCLIP4.64□□□□□ -1.67
VPS29-202ENST00000447578 EIF2AK4Q9P2K8 1649 aaKnown RBP4.64□□□□□ -1.67
VPS29-202ENST00000447578 KANK1Q14678 1352 aa4.64□□□□□ -1.67
VPS29-202ENST00000447578 DISP3Q9P2K9 1392 aa4.64□□□□□ -1.67
VPS29-202ENST00000447578 SCAPERQ9BY12 1400 aa4.63□□□□□ -1.67
VPS29-202ENST00000447578 PRDM15P57071 1507 aaPredicted RBP4.63□□□□□ -1.67
VPS29-202ENST00000447578 ZFYVE16Q7Z3T8 1539 aa4.63□□□□□ -1.67
VPS29-202ENST00000447578 ARAP3Q8WWN8 1544 aa4.63□□□□□ -1.67
VPS29-202ENST00000447578 B4E171 279 aa4.63□□□□□ -1.67
VPS29-202ENST00000447578 H0YIZ8 118 aa4.63□□□□□ -1.67
VPS29-202ENST00000447578 RRP9O43818 475 aaKnown RBP4.63□□□□□ -1.67
VPS29-202ENST00000447578 CCNT2O60583 730 aaKnown RBP4.63□□□□□ -1.67
VPS29-202ENST00000447578 PIAS2O75928 621 aa4.63□□□□□ -1.67
VPS29-202ENST00000447578 BAIAP3O94812 1187 aa4.63□□□□□ -1.67
VPS29-202ENST00000447578 VIPP01282 170 aa4.63□□□□□ -1.67
VPS29-202ENST00000447578 PRKCBP05771 671 aa4.63□□□□□ -1.67
VPS29-202ENST00000447578 ATP1A3P13637 1013 aa4.63□□□□□ -1.67
VPS29-202ENST00000447578 CAPN3P20807 821 aa4.63□□□□□ -1.67
VPS29-202ENST00000447578 CERS1P27544 350 aa4.63□□□□□ -1.67
VPS29-202ENST00000447578 LIPAP38571 399 aa4.63□□□□□ -1.67
VPS29-202ENST00000447578 TSPAN7P41732 249 aa4.63□□□□□ -1.67
VPS29-202ENST00000447578 GCLCP48506 637 aaPredicted RBP4.63□□□□□ -1.67
VPS29-202ENST00000447578 ACTR2P61160 394 aa4.63□□□□□ -1.67
VPS29-202ENST00000447578 SP2Q02086 613 aa4.63□□□□□ -1.67
VPS29-202ENST00000447578 UBE3AQ05086 875 aa4.63□□□□□ -1.67
VPS29-202ENST00000447578 ZNF750Q32MQ0 723 aa4.63□□□□□ -1.67
VPS29-202ENST00000447578 LAYNQ6UX15 382 aa4.63□□□□□ -1.67
VPS29-202ENST00000447578 RRAGAQ7L523 313 aa4.63□□□□□ -1.67
VPS29-202ENST00000447578 ZNF280BQ86YH2 543 aa4.63□□□□□ -1.67
VPS29-202ENST00000447578 NRSN1Q8IZ57 195 aa4.63□□□□□ -1.67
VPS29-202ENST00000447578 ATRIPQ8WXE1 791 aa4.63□□□□□ -1.67
VPS29-202ENST00000447578 THAP4Q8WY91 577 aa4.63□□□□□ -1.67
VPS29-202ENST00000447578 RSC1A1Q92681 617 aa4.63□□□□□ -1.67
VPS29-202ENST00000447578 HTRA1Q92743 480 aa4.63□□□□□ -1.67
VPS29-202ENST00000447578 SDCCAG3Q96C92 435 aa4.63□□□□□ -1.67
VPS29-202ENST00000447578 TESK2Q96S53 571 aa4.63□□□□□ -1.67
VPS29-202ENST00000447578 BRD8Q9H0E9 1235 aa4.63□□□□□ -1.67
VPS29-202ENST00000447578 PANK3Q9H999 370 aa4.63□□□□□ -1.67
VPS29-202ENST00000447578 BLOC1S4Q9NUP1 217 aa4.63□□□□□ -1.67
VPS29-202ENST00000447578 DLL3Q9NYJ7 618 aa4.63□□□□□ -1.67
VPS29-202ENST00000447578 LPAR3Q9UBY5 353 aa4.63□□□□□ -1.67
VPS29-202ENST00000447578 SHOC2Q9UQ13 582 aa4.63□□□□□ -1.67
VPS29-202ENST00000447578 HPSEQ9Y251 543 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms