RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	ANO7	Q6IWH7	933 aa		9.22	□□□□□ -0.93
USP4-213	ENST00000488520	ARMCX6	Q7L4S7	300 aa		9.22	□□□□□ -0.93
USP4-213	ENST00000488520	MON1A	Q86VX9	555 aa		9.22	□□□□□ -0.93
USP4-213	ENST00000488520	DCP1B	Q8IZD4	617 aa	Known RBP	9.22	□□□□□ -0.93
USP4-213	ENST00000488520	CCDC33	Q8N5R6	958 aa		9.22	□□□□□ -0.93
USP4-213	ENST00000488520	TOP6BL	Q8N6T0	577 aa		9.22	□□□□□ -0.93
USP4-213	ENST00000488520	TSTD1	Q8NFU3	115 aa		9.22	□□□□□ -0.93
USP4-213	ENST00000488520	C2orf15	Q8WU43	125 aa	Known RBP	9.22	□□□□□ -0.93
USP4-213	ENST00000488520	ACD	Q96AP0	544 aa		9.22	□□□□□ -0.93
USP4-213	ENST00000488520	FAXDC2	Q96IV6	333 aa		9.22	□□□□□ -0.93
USP4-213	ENST00000488520	CRACR2A	Q9BSW2	395 aa		9.22	□□□□□ -0.93
USP4-213	ENST00000488520	LINC00597	Q9H2U6	94 aa		9.22	□□□□□ -0.93
USP4-213	ENST00000488520	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	9.22	□□□□□ -0.93	2e-15	■■■■■ 372.6
USP4-213	ENST00000488520	NDFIP2	Q9NV92	336 aa		9.22	□□□□□ -0.93
USP4-213	ENST00000488520	GDAP2	Q9NXN4	497 aa		9.22	□□□□□ -0.93
USP4-213	ENST00000488520	EBF1	Q9UH73	591 aa		9.22	□□□□□ -0.93
USP4-213	ENST00000488520	ZMYM5	Q9UJ78	669 aa		9.22	□□□□□ -0.93
USP4-213	ENST00000488520	WASF3	Q9UPY6	502 aa		9.22	□□□□□ -0.93
USP4-213	ENST00000488520	COQ4	Q9Y3A0	265 aa		9.22	□□□□□ -0.93
USP4-213	ENST00000488520		A0A1W2PNR3	127 aa		9.21	□□□□□ -0.94
USP4-213	ENST00000488520	SRRM3	A6NNA2	597 aa	Predicted RBP	9.21	□□□□□ -0.94
USP4-213	ENST00000488520		A8MXQ7	604 aa		9.21	□□□□□ -0.94
USP4-213	ENST00000488520	HYAL3	O43820	417 aa	Predicted RBP	9.21	□□□□□ -0.94
USP4-213	ENST00000488520	TADA3	O75528	432 aa		9.21	□□□□□ -0.94
USP4-213	ENST00000488520	VNN1	O95497	513 aa		9.21	□□□□□ -0.94
USP4-213	ENST00000488520	ASS1	P00966	412 aa	Known RBP	9.21	□□□□□ -0.94
USP4-213	ENST00000488520	TPM1	P09493	284 aa		9.21	□□□□□ -0.94
USP4-213	ENST00000488520	CEACAM1	P13688	526 aa		9.21	□□□□□ -0.94
USP4-213	ENST00000488520	PCSK1	P29120	753 aa		9.21	□□□□□ -0.94
USP4-213	ENST00000488520	NOS2	P35228	1153 aa		9.21	□□□□□ -0.94
USP4-213	ENST00000488520	MAPK8	P45983	427 aa		9.21	□□□□□ -0.94
USP4-213	ENST00000488520	PSMA6	P60900	246 aa	Known RBP	9.21	□□□□□ -0.94
USP4-213	ENST00000488520	TSPY1	Q01534	308 aa		9.21	□□□□□ -0.94
USP4-213	ENST00000488520	ZNF77	Q15935	545 aa		9.21	□□□□□ -0.94
USP4-213	ENST00000488520	CCDC142	Q17RM4	750 aa		9.21	□□□□□ -0.94
USP4-213	ENST00000488520	ENOSF1	Q7L5Y1	443 aa		9.21	□□□□□ -0.94
USP4-213	ENST00000488520	PPM1K	Q8N3J5	372 aa		9.21	□□□□□ -0.94
USP4-213	ENST00000488520	ARL14EP	Q8N8R7	260 aa	Predicted RBP	9.21	□□□□□ -0.94
USP4-213	ENST00000488520	NEK11	Q8NG66	645 aa		9.21	□□□□□ -0.94
USP4-213	ENST00000488520	OSCP1	Q8WVF1	389 aa		9.21	□□□□□ -0.94
USP4-213	ENST00000488520	RLN3	Q8WXF3	142 aa		9.21	□□□□□ -0.94
USP4-213	ENST00000488520	ZCCHC14	Q8WYQ9	949 aa	Known RBP	9.21	□□□□□ -0.94
USP4-213	ENST00000488520	GATA6	Q92908	595 aa		9.21	□□□□□ -0.94
USP4-213	ENST00000488520	ATP2A3	Q93084	1043 aa		9.21	□□□□□ -0.94
USP4-213	ENST00000488520	EXOC4	Q96A65	974 aa		9.21	□□□□□ -0.94
USP4-213	ENST00000488520	ABHD17A	Q96GS6	310 aa		9.21	□□□□□ -0.94
USP4-213	ENST00000488520	TRIM5	Q9C035	493 aa		9.21	□□□□□ -0.94
USP4-213	ENST00000488520	ZCCHC2	Q9C0B9	1178 aa	Known RBP	9.21	□□□□□ -0.94
USP4-213	ENST00000488520	INTS2	Q9H0H0	1204 aa	Known RBP	9.21	□□□□□ -0.94
USP4-213	ENST00000488520	VRTN	Q9H8Y1	702 aa		9.21	□□□□□ -0.94
USP4-213	ENST00000488520	CYP3A43	Q9HB55	503 aa		9.21	□□□□□ -0.94
USP4-213	ENST00000488520	UBE2T	Q9NPD8	197 aa	Predicted RBP	9.21	□□□□□ -0.94
USP4-213	ENST00000488520	GCNT4	Q9P109	453 aa		9.21	□□□□□ -0.94
USP4-213	ENST00000488520	SIX4	Q9UIU6	781 aa		9.21	□□□□□ -0.94
USP4-213	ENST00000488520	ZNF232	Q9UNY5	417 aa		9.21	□□□□□ -0.94
USP4-213	ENST00000488520	PCDHGC4	Q9Y5F7	938 aa		9.21	□□□□□ -0.94
USP4-213	ENST00000488520	BPTF	Q12830	3046 aa		9.21	□□□□□ -0.94
USP4-213	ENST00000488520	PTPRJ	Q12913	1337 aa		9.21	□□□□□ -0.94
USP4-213	ENST00000488520	MSANTD3-TMEFF1	A0A0A6YYJ0	341 aa		9.2	□□□□□ -0.94
USP4-213	ENST00000488520	TRAV19	A0A0A6YYK7	116 aa		9.2	□□□□□ -0.94
USP4-213	ENST00000488520	SERTM1	A2A2V5	107 aa		9.2	□□□□□ -0.94
USP4-213	ENST00000488520	C2orf78	A6NCI8	922 aa		9.2	□□□□□ -0.94
USP4-213	ENST00000488520		K7EQS6	105 aa		9.2	□□□□□ -0.94
USP4-213	ENST00000488520	HCRT	O43612	131 aa		9.2	□□□□□ -0.94
USP4-213	ENST00000488520	BNIP3L	O60238	219 aa		9.2	□□□□□ -0.94
USP4-213	ENST00000488520	TACC1	O75410	805 aa		9.2	□□□□□ -0.94
USP4-213	ENST00000488520	PDGFRB	P09619	1106 aa		9.2	□□□□□ -0.94
USP4-213	ENST00000488520	USP17L7	P0C7H9	530 aa		9.2	□□□□□ -0.94
USP4-213	ENST00000488520	ATP1A3	P13637	1013 aa		9.2	□□□□□ -0.94
USP4-213	ENST00000488520	ZNF18	P17022	549 aa		9.2	□□□□□ -0.94
USP4-213	ENST00000488520	SLC9A1	P19634	815 aa		9.2	□□□□□ -0.94
USP4-213	ENST00000488520	CSRP1	P21291	193 aa	Known RBP	9.2	□□□□□ -0.94
USP4-213	ENST00000488520	USP8	P40818	1118 aa		9.2	□□□□□ -0.94
USP4-213	ENST00000488520	NOP14	P78316	857 aa	Known RBP	9.2	□□□□□ -0.94
USP4-213	ENST00000488520	RING1	Q06587	406 aa		9.2	□□□□□ -0.94
USP4-213	ENST00000488520	SMARCB1	Q12824	385 aa		9.2	□□□□□ -0.94
USP4-213	ENST00000488520	ZNF268	Q14587	947 aa	Predicted RBP	9.2	□□□□□ -0.94
USP4-213	ENST00000488520	MAPRE1	Q15691	268 aa	Known RBP	9.2	□□□□□ -0.94
USP4-213	ENST00000488520	TRIM61	Q5EBN2	209 aa		9.2	□□□□□ -0.94
USP4-213	ENST00000488520	SCARA3	Q6AZY7	606 aa		9.2	□□□□□ -0.94
USP4-213	ENST00000488520	SCARA5	Q6ZMJ2	495 aa		9.2	□□□□□ -0.94
USP4-213	ENST00000488520	SFTPA1	Q8IWL2	248 aa		9.2	□□□□□ -0.94
USP4-213	ENST00000488520	SCN4B	Q8IWT1	228 aa		9.2	□□□□□ -0.94
USP4-213	ENST00000488520	TMEFF1	Q8IYR6	380 aa		9.2	□□□□□ -0.94
USP4-213	ENST00000488520	ADGRF2	Q8IZF7	708 aa		9.2	□□□□□ -0.94
USP4-213	ENST00000488520	PDCL2	Q8N4E4	241 aa		9.2	□□□□□ -0.94
USP4-213	ENST00000488520	FRMD1	Q8N878	549 aa		9.2	□□□□□ -0.94
USP4-213	ENST00000488520	TSEN2	Q8NCE0	465 aa	Known RBP	9.2	□□□□□ -0.94
USP4-213	ENST00000488520	ZNF397	Q8NF99	534 aa	Predicted RBP	9.2	□□□□□ -0.94
USP4-213	ENST00000488520	MDGA1	Q8NFP4	955 aa		9.2	□□□□□ -0.94
USP4-213	ENST00000488520	SPATA18	Q8TC71	538 aa		9.2	□□□□□ -0.94
USP4-213	ENST00000488520	SH3RF2	Q8TEC5	729 aa		9.2	□□□□□ -0.94
USP4-213	ENST00000488520	USP33	Q8TEY7	942 aa		9.2	□□□□□ -0.94
USP4-213	ENST00000488520	ANP32B	Q92688	251 aa	Known RBP	9.2	□□□□□ -0.94
USP4-213	ENST00000488520	FAM84A	Q96KN4	292 aa		9.2	□□□□□ -0.94
USP4-213	ENST00000488520	TNIP3	Q96KP6	325 aa		9.2	□□□□□ -0.94
USP4-213	ENST00000488520	NUP58	Q9BVL2	599 aa		9.2	□□□□□ -0.94
USP4-213	ENST00000488520	NIF3L1	Q9GZT8	377 aa		9.2	□□□□□ -0.94
USP4-213	ENST00000488520	TSPAN10	Q9H1Z9	355 aa	Predicted RBP	9.2	□□□□□ -0.94
USP4-213	ENST00000488520	ZDHHC4	Q9NPG8	344 aa		9.2	□□□□□ -0.94

Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms