RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 PRDM11Q9NQV5 511 aa4.9□□□□□ -1.63
CD44-239ENST00000639002 GJB4Q9NTQ9 266 aa4.9□□□□□ -1.63
CD44-239ENST00000639002 ARL8BQ9NVJ2 186 aa4.9□□□□□ -1.63
CD44-239ENST00000639002 TMEM45AQ9NWC5 275 aa4.9□□□□□ -1.63
CD44-239ENST00000639002 SNX13Q9Y5W8 968 aa4.9□□□□□ -1.63
CD44-239ENST00000639002 SQORQ9Y6N5 450 aa4.9□□□□□ -1.63
CD44-239ENST00000639002 IGKV2D-30A0A075B6S6 120 aa4.89□□□□□ -1.63
CD44-239ENST00000639002 B4DGG1 531 aa4.89□□□□□ -1.63
CD44-239ENST00000639002 TLX3O43711 291 aaPredicted RBP4.89□□□□□ -1.63
CD44-239ENST00000639002 ST6GAL1P15907 406 aa4.89□□□□□ -1.63
CD44-239ENST00000639002 SCP2P22307 547 aa4.89□□□□□ -1.63
CD44-239ENST00000639002 RPS6KB1P23443 525 aa4.89□□□□□ -1.63
CD44-239ENST00000639002 HOXD12P35452 270 aa4.89□□□□□ -1.63
CD44-239ENST00000639002 HTR6P50406 440 aa4.89□□□□□ -1.63
CD44-239ENST00000639002 ZNF84P51523 738 aa4.89□□□□□ -1.63
CD44-239ENST00000639002 DGKQP52824 942 aa4.89□□□□□ -1.63
CD44-239ENST00000639002 FAM57BQ71RH2 274 aa4.89□□□□□ -1.63
CD44-239ENST00000639002 PIM3Q86V86 326 aa4.89□□□□□ -1.63
CD44-239ENST00000639002 RFX6Q8HWS3 928 aa4.89□□□□□ -1.63
CD44-239ENST00000639002 MPLKIPQ8TAP9 179 aa4.89□□□□□ -1.63
CD44-239ENST00000639002 ADAMTS15Q8TE58 950 aa4.89□□□□□ -1.63
CD44-239ENST00000639002 FAM234AQ9H0X4 552 aa4.89□□□□□ -1.63
CD44-239ENST00000639002 ZBTB26Q9HCK0 441 aa4.89□□□□□ -1.63
CD44-239ENST00000639002 TRBV5-3A0A0A0MS03 114 aa4.88□□□□□ -1.63
CD44-239ENST00000639002 CLCA1A8K7I4 914 aa4.88□□□□□ -1.63
CD44-239ENST00000639002 RHPN2P1A8MT19 583 aa4.88□□□□□ -1.63
CD44-239ENST00000639002 TULP3O75386 442 aa4.88□□□□□ -1.63
CD44-239ENST00000639002 CD63P08962 238 aa4.88□□□□□ -1.63
CD44-239ENST00000639002 DUSP1P28562 367 aa4.88□□□□□ -1.63
CD44-239ENST00000639002 SOX2P48431 317 aa4.88□□□□□ -1.63
CD44-239ENST00000639002 MTA1Q13330 715 aa4.88□□□□□ -1.63
CD44-239ENST00000639002 CNGA3Q16281 694 aa4.88□□□□□ -1.63
CD44-239ENST00000639002 TMEM196Q5HYL7 178 aa4.88□□□□□ -1.63
CD44-239ENST00000639002 RAP1GAP2Q684P5 730 aa4.88□□□□□ -1.63
CD44-239ENST00000639002 KYAT3Q6YP21 454 aaKnown RBP4.88□□□□□ -1.63
CD44-239ENST00000639002 PIGKQ92643 395 aa4.88□□□□□ -1.63
CD44-239ENST00000639002 CELF1Q92879 486 aaKnown RBP4.88□□□□□ -1.63
CD44-239ENST00000639002 IQCDQ96DY2 449 aa4.88□□□□□ -1.63
CD44-239ENST00000639002 LRRC46Q96FV0 321 aa4.88□□□□□ -1.63
CD44-239ENST00000639002 GDF15Q99988 308 aa4.88□□□□□ -1.63
CD44-239ENST00000639002 MOV10Q9HCE1 1003 aaKnown RBP4.88□□□□□ -1.63
CD44-239ENST00000639002 RXFP3Q9NSD7 469 aa4.88□□□□□ -1.63
CD44-239ENST00000639002 SHROOM4Q9ULL8 1493 aa4.88□□□□□ -1.63
CD44-239ENST00000639002 A0A0G2JK05 382 aa4.87□□□□□ -1.63
CD44-239ENST00000639002 A0A1W2PPC1 479 aa4.87□□□□□ -1.63
CD44-239ENST00000639002 M0QZQ0 153 aa4.87□□□□□ -1.63
CD44-239ENST00000639002 THAP12O43422 761 aa4.87□□□□□ -1.63
CD44-239ENST00000639002 SMAD6O43541 496 aaKnown RBP4.87□□□□□ -1.63
CD44-239ENST00000639002 EPN2O95208 641 aa4.87□□□□□ -1.63
CD44-239ENST00000639002 SLC5A1P13866 664 aa4.87□□□□□ -1.63
CD44-239ENST00000639002 TSHRP16473 764 aa4.87□□□□□ -1.63
CD44-239ENST00000639002 FGFR2P21802 821 aa4.87□□□□□ -1.63
CD44-239ENST00000639002 MST1P26927 711 aa4.87□□□□□ -1.63
CD44-239ENST00000639002 VPS41P49754 854 aa4.87□□□□□ -1.63
CD44-239ENST00000639002 CASP5P51878 434 aa4.87□□□□□ -1.63
CD44-239ENST00000639002 GPS1Q13098 491 aa4.87□□□□□ -1.63
CD44-239ENST00000639002 MIDNQ504T8 468 aa4.87□□□□□ -1.63
CD44-239ENST00000639002 ZNF793Q6ZN11 406 aa4.87□□□□□ -1.63
CD44-239ENST00000639002 ABHD5Q8WTS1 349 aa4.87□□□□□ -1.63
CD44-239ENST00000639002 AKAP1Q92667 903 aaKnown RBP eCLIP4.87□□□□□ -1.63
CD44-239ENST00000639002 GJA10Q969M2 543 aa4.87□□□□□ -1.63
CD44-239ENST00000639002 PNPLA8Q9NP80 782 aa4.87□□□□□ -1.63
CD44-239ENST00000639002 ASNSD1Q9NWL6 643 aa4.87□□□□□ -1.63
CD44-239ENST00000639002 IGLV5-39A0A0G2JS06 123 aa4.86□□□□□ -1.63
CD44-239ENST00000639002 OR2W5A6NFC9 320 aa4.86□□□□□ -1.63
CD44-239ENST00000639002 FOXN3O00409 490 aaPredicted RBP4.86□□□□□ -1.63
CD44-239ENST00000639002 KPNA5O15131 536 aa4.86□□□□□ -1.63
CD44-239ENST00000639002 PQBP1O60828 265 aaKnown RBP4.86□□□□□ -1.63
CD44-239ENST00000639002 ATG13O75143 517 aa4.86□□□□□ -1.63
CD44-239ENST00000639002 COQ9O75208 318 aa4.86□□□□□ -1.63
CD44-239ENST00000639002 ATF3P18847 181 aa4.86□□□□□ -1.63
CD44-239ENST00000639002 DRD1P21728 446 aa4.86□□□□□ -1.63
CD44-239ENST00000639002 NDUFS1P28331 727 aa4.86□□□□□ -1.63
CD44-239ENST00000639002 IGHMBP2P38935 993 aaKnown RBP4.86□□□□□ -1.63
CD44-239ENST00000639002 FAXCQ5TGI0 409 aa4.86□□□□□ -1.63
CD44-239ENST00000639002 CCDC28AQ8IWP9 274 aa4.86□□□□□ -1.63
CD44-239ENST00000639002 CLASRPQ8N2M8 674 aaKnown RBP4.86□□□□□ -1.63
CD44-239ENST00000639002 RNF26Q9BY78 433 aaPredicted RBP4.86□□□□□ -1.63
CD44-239ENST00000639002 MLXIPQ9HAP2 919 aa4.86□□□□□ -1.63
CD44-239ENST00000639002 MSRB1Q9NZV6 116 aa4.86□□□□□ -1.63
CD44-239ENST00000639002 MYO1AQ9UBC5 1043 aa4.86□□□□□ -1.63
CD44-239ENST00000639002 PCDHA12Q9UN75 941 aa4.86□□□□□ -1.63
CD44-239ENST00000639002 POM121BA6NF01 834 aa4.85□□□□□ -1.63
CD44-239ENST00000639002 DHHO43323 396 aa4.85□□□□□ -1.63
CD44-239ENST00000639002 NDUFB8O95169 186 aa4.85□□□□□ -1.63
CD44-239ENST00000639002 ALADP13716 330 aa4.85□□□□□ -1.63
CD44-239ENST00000639002 GABRB3P28472 473 aa4.85□□□□□ -1.63
CD44-239ENST00000639002 SLC5A2P31639 672 aa4.85□□□□□ -1.63
CD44-239ENST00000639002 AGTR2P50052 363 aa4.85□□□□□ -1.63
CD44-239ENST00000639002 BFSP2Q13515 415 aa4.85□□□□□ -1.63
CD44-239ENST00000639002 ERV3-1Q14264 604 aa4.85□□□□□ -1.63
CD44-239ENST00000639002 ELF2Q15723 593 aa4.85□□□□□ -1.63
CD44-239ENST00000639002 ODF3L2Q3SX64 289 aa4.85□□□□□ -1.63
CD44-239ENST00000639002 TTLL5Q6EMB2 1281 aa4.85□□□□□ -1.63
CD44-239ENST00000639002 ACSM6Q6P461 480 aa4.85□□□□□ -1.63
CD44-239ENST00000639002 ZNF549Q6P9A3 640 aa4.85□□□□□ -1.63
CD44-239ENST00000639002 PIK3AP1Q6ZUJ8 805 aa4.85□□□□□ -1.63
CD44-239ENST00000639002 DGKHQ86XP1 1220 aa4.85□□□□□ -1.63
CD44-239ENST00000639002 ARL14EPQ8N8R7 260 aaPredicted RBP4.85□□□□□ -1.63
CD44-239ENST00000639002 SLC25A28Q96A46 364 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms