RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 THEGLP0DJG4 465 aa5.11□□□□□ -1.59
USP4-209ENST00000475873 MBL2P11226 248 aaPredicted RBP5.11□□□□□ -1.59
USP4-209ENST00000475873 CKMT1AP12532 417 aa5.11□□□□□ -1.59
USP4-209ENST00000475873 XRCC6P12956 609 aaKnown RBP eCLIP5.11□□□□□ -1.59
USP4-209ENST00000475873 NR1D1P20393 614 aa5.11□□□□□ -1.59
USP4-209ENST00000475873 CD38P28907 300 aa5.11□□□□□ -1.59
USP4-209ENST00000475873 RCAN1P53805 252 aa5.11□□□□□ -1.59
USP4-209ENST00000475873 CACNA2D1P54289 1103 aa5.11□□□□□ -1.59
USP4-209ENST00000475873 BCAT1P54687 386 aa5.11□□□□□ -1.59
USP4-209ENST00000475873 MFAP3P55082 362 aa5.11□□□□□ -1.59
USP4-209ENST00000475873 RPS14P62263 151 aaKnown RBP5.11□□□□□ -1.59
USP4-209ENST00000475873 HNRNPUQ00839 825 aaKnown RBP eCLIP5.11□□□□□ -1.59
USP4-209ENST00000475873 MCL1Q07820 350 aa5.11□□□□□ -1.59
USP4-209ENST00000475873 MAPK7Q13164 816 aa5.11□□□□□ -1.59
USP4-209ENST00000475873 HDAC1Q13547 482 aaPredicted RBP5.11□□□□□ -1.59
USP4-209ENST00000475873 CAMK2GQ13555 558 aaPredicted RBP5.11□□□□□ -1.59
USP4-209ENST00000475873 STARD3Q14849 445 aa5.11□□□□□ -1.59
USP4-209ENST00000475873 NECTIN1Q15223 517 aa5.11□□□□□ -1.59
USP4-209ENST00000475873 TESK1Q15569 626 aa5.11□□□□□ -1.59
USP4-209ENST00000475873 ECM1Q16610 540 aa5.11□□□□□ -1.59
USP4-209ENST00000475873 ADCK5Q3MIX3 580 aa5.11□□□□□ -1.59
USP4-209ENST00000475873 CFAP221Q4G0U5 840 aa5.11□□□□□ -1.59
USP4-209ENST00000475873 INTS6LQ5JSJ4 861 aaKnown RBP5.11□□□□□ -1.59
USP4-209ENST00000475873 CREB3L3Q68CJ9 461 aa5.11□□□□□ -1.59
USP4-209ENST00000475873 KIAA0895LQ68EN5 471 aa5.11□□□□□ -1.59
USP4-209ENST00000475873 B4GALNT3Q6L9W6 998 aa5.11□□□□□ -1.59
USP4-209ENST00000475873 TPGS1Q6ZTW0 290 aa5.11□□□□□ -1.59
USP4-209ENST00000475873 APBB1IPQ7Z5R6 666 aaPredicted RBP5.11□□□□□ -1.59
USP4-209ENST00000475873 SCN4BQ8IWT1 228 aa5.11□□□□□ -1.59
USP4-209ENST00000475873 DCP1BQ8IZD4 617 aaKnown RBP5.11□□□□□ -1.59
USP4-209ENST00000475873 PDCL2Q8N4E4 241 aa5.11□□□□□ -1.59
USP4-209ENST00000475873 FSIP1Q8NA03 581 aa5.11□□□□□ -1.59
USP4-209ENST00000475873 OR4C6Q8NH72 309 aa5.11□□□□□ -1.59
USP4-209ENST00000475873 ARRDC3Q96B67 414 aa5.11□□□□□ -1.59
USP4-209ENST00000475873 OTUB2Q96DC9 234 aa5.11□□□□□ -1.59
USP4-209ENST00000475873 FAM84AQ96KN4 292 aa5.11□□□□□ -1.59
USP4-209ENST00000475873 CCDC43Q96MW1 224 aaKnown RBP5.11□□□□□ -1.59
USP4-209ENST00000475873 DUSP9Q99956 384 aaKnown RBP5.11□□□□□ -1.59
USP4-209ENST00000475873 TCHPQ9BT92 498 aa5.11□□□□□ -1.59
USP4-209ENST00000475873 BBS2Q9BXC9 721 aa5.11□□□□□ -1.59
USP4-209ENST00000475873 SLC26A6Q9BXS9 759 aa5.11□□□□□ -1.59
USP4-209ENST00000475873 UNKQ9C0B0 810 aaKnown RBP5.11□□□□□ -1.59
USP4-209ENST00000475873 LHX5Q9H2C1 402 aa5.11□□□□□ -1.59
USP4-209ENST00000475873 PLEKHA5Q9HAU0 1116 aa5.11□□□□□ -1.59
USP4-209ENST00000475873 TRPM5Q9NZQ8 1165 aa5.11□□□□□ -1.59
USP4-209ENST00000475873 MARK1Q9P0L2 795 aa5.11□□□□□ -1.59
USP4-209ENST00000475873 RCAN3Q9UKA8 241 aa5.11□□□□□ -1.59
USP4-209ENST00000475873 ACSL6Q9UKU0 697 aa5.11□□□□□ -1.59
USP4-209ENST00000475873 CLEC4EQ9ULY5 219 aa5.11□□□□□ -1.59
USP4-209ENST00000475873 L1RE1Q9UN81 338 aa5.11□□□□□ -1.59
USP4-209ENST00000475873 PTPRJQ12913 1337 aa5.11□□□□□ -1.59
USP4-209ENST00000475873 CROCCQ5TZA2 2017 aa5.11□□□□□ -1.59
USP4-209ENST00000475873 TLR4O00206 839 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 FFAR2O15552 330 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 DTNBO60941 627 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 TOM1L1O75674 476 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 UBE4BO95155 1302 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 ABL1P00519 1130 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 LDLRP01130 860 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 CLTAP09496 248 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 IRF1P10914 325 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 ACADMP11310 421 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 HGFP14210 728 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 CPA1P15085 419 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 GCFC2P16383 781 aaKnown RBP5.1□□□□□ -1.59
USP4-209ENST00000475873 DGKAP23743 735 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 ARRB1P49407 418 aaPredicted RBP5.1□□□□□ -1.59
USP4-209ENST00000475873 DGKGP49619 791 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 PDE6CP51160 858 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 GALCP54803 685 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 PEX3P56589 373 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 DAB2P98082 770 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 TAF10Q12962 218 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 DRAP1Q14919 205 aaPredicted RBP5.1□□□□□ -1.59
USP4-209ENST00000475873 PPP2R5AQ15172 486 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 NFE2Q16621 373 aaPredicted RBP5.1□□□□□ -1.59
USP4-209ENST00000475873 NCEH1Q6PIU2 408 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 CRTC1Q6UUV9 634 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 B3GNT8Q7Z7M8 397 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 NEK8Q86SG6 692 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 C14orf80Q86SX3 495 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 RTTNQ86VV8 2226 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 CHD1LQ86WJ1 897 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 DTX1Q86Y01 620 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 SMC5Q8IY18 1101 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 THEM5Q8N1Q8 247 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 OR2T3Q8NH03 318 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 PDCD6IPQ8WUM4 868 aaKnown RBP5.1□□□□□ -1.59
USP4-209ENST00000475873 PIWIL1Q96J94 861 aaKnown RBP5.1□□□□□ -1.59
USP4-209ENST00000475873 SPATA17Q96L03 361 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 APOLD1Q96LR9 279 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 RNF26Q9BY78 433 aaPredicted RBP5.1□□□□□ -1.59
USP4-209ENST00000475873 C22orf23Q9BZE7 217 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 BTBD1Q9H0C5 482 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 ZNF106Q9H2Y7 1883 aaKnown RBP5.1□□□□□ -1.59
USP4-209ENST00000475873 TMEM245Q9H330 911 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 MTG2Q9H4K7 406 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 TMEM134Q9H6X4 195 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 CCSER2Q9H7U1 834 aa5.1□□□□□ -1.59
USP4-209ENST00000475873 ERVMER34-1Q9H9K5 563 aa5.1□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms