RNA–Protein interactions for RNA: ENST00000395898.3

VPS13C-204, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 11,012 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-204ENST00000395898 ELOVL4Q9GZR5 314 aa5.61□□□□□ -1.51
VPS13C-204ENST00000395898 CDC42EP4Q9H3Q1 356 aaKnown RBP5.61□□□□□ -1.51
VPS13C-204ENST00000395898 L2HGDHQ9H9P8 463 aa5.61□□□□□ -1.51
VPS13C-204ENST00000395898 FBXO28Q9NVF7 368 aa5.61□□□□□ -1.51
VPS13C-204ENST00000395898 SYBUQ9NX95 663 aa5.61□□□□□ -1.51
VPS13C-204ENST00000395898 HACD1B0YJ81 288 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 KRT75O95678 551 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 MBL2P11226 248 aaPredicted RBP5.6□□□□□ -1.51
VPS13C-204ENST00000395898 ITGALP20701 1170 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 FKBP1AP62942 108 aaKnown RBP5.6□□□□□ -1.51
VPS13C-204ENST00000395898 PKN1Q16512 942 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 OTOP1Q7RTM1 612 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 DDX42Q86XP3 938 aaKnown RBP eCLIP5.6□□□□□ -1.51
VPS13C-204ENST00000395898 TDRD5Q8NAT2 981 aaKnown RBP5.6□□□□□ -1.51
VPS13C-204ENST00000395898 ATP8B4Q8TF62 1192 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 CBWD1Q9BRT8 395 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 ABHD16BQ9H3Z7 469 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 COMMD8Q9NX08 183 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 VPS28Q9UK41 221 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 SHOC2Q9UQ13 582 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 PRG3Q9Y2Y8 225 aaPredicted RBP5.6□□□□□ -1.51
VPS13C-204ENST00000395898 ZNF839A8K0R7 811 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 TRDMT1O14717 391 aaKnown RBP5.6□□□□□ -1.51
VPS13C-204ENST00000395898 ST13P50502 369 aaKnown RBP5.6□□□□□ -1.51
VPS13C-204ENST00000395898 CDK16Q00536 496 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 CDH17Q12864 832 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 FUT11Q495W5 492 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 SPDYCQ5MJ68 293 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 SV2AQ7L0J3 742 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 LUZP2Q86TE4 346 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 REXO1L1PQ8IX06 675 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 COLGALT1Q8NBJ5 622 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 CERKQ8TCT0 537 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 CAVIN3Q969G5 261 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 C19orf60Q96EN9 201 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 MTFR1LQ9H019 292 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 KIAA1683Q9H0B3 1180 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 PARVBQ9HBI1 364 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 DDX43Q9NXZ2 648 aaKnown RBP5.6□□□□□ -1.51
VPS13C-204ENST00000395898 ZNF711Q9Y462 761 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 FAM47E-STBD1D6RA91 191 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 PLEKP08567 350 aaPredicted RBP5.6□□□□□ -1.51
VPS13C-204ENST00000395898 RRM1P23921 792 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 CASP4P49662 377 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 ZNF268Q14587 947 aaPredicted RBP5.6□□□□□ -1.51
VPS13C-204ENST00000395898 ZFP1Q6P2D0 407 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 LAYNQ6UX15 382 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 SKA1Q96BD8 255 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 SERPINB11Q96P15 392 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 TBCBQ99426 244 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 KLHL4Q9C0H6 718 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 VTA1Q9NP79 307 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 RAMP2O60895 175 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 DDHD2O94830 711 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 EPB42P16452 691 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 PAX3P23760 479 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 CDK7P50613 346 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 TKTL1P51854 596 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 ERVK-24P63145 666 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 CDK20Q8IZL9 346 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 CARNMT1Q8N4J0 409 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 CASKIN2Q8WXE0 1202 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 TMBIM4Q9HC24 238 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 ADAM30Q9UKF2 790 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 ANKRD6Q9Y2G4 727 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 GNG14A0A1W2PPG7 69 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 GYS1P13807 737 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 EIF4BP23588 611 aaKnown RBP5.6□□□□□ -1.51
VPS13C-204ENST00000395898 YY1P25490 414 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 CLCN3P51790 818 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 ATXN3P54252 364 aaPredicted RBP5.6□□□□□ -1.51
VPS13C-204ENST00000395898 TRIM71Q2Q1W2 868 aaKnown RBP5.6□□□□□ -1.51
VPS13C-204ENST00000395898 GPR141Q7Z602 305 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 PHACTR4Q8IZ21 702 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 PANX3Q96QZ0 392 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 VAT1Q99536 393 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 CPNE1Q99829 537 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 EXOSC4Q9NPD3 245 aaKnown RBP5.6□□□□□ -1.51
VPS13C-204ENST00000395898 IARS2Q9NSE4 1012 aaKnown RBP5.6□□□□□ -1.51
VPS13C-204ENST00000395898 TSPAN16Q9UKR8 245 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 RIMBP3CA6NJZ7 1639 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 RIMBP3BA6NNM3 1639 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 RIMBP3Q9UFD9 1639 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 SAC3D1A6NKF1 404 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 RAD51BO15315 384 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 SNUPNO95149 360 aaKnown RBP5.6□□□□□ -1.51
VPS13C-204ENST00000395898 ARP10275 920 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 DPEP1P16444 411 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 CENPAP49450 140 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 RAD23AP54725 363 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 PRAMEF18Q5VWM3 479 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 RETSATQ6NUM9 610 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 EID3Q8N140 333 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 ELOVL6Q9H5J4 265 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 SENP2Q9HC62 589 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 KLHL28Q9NXS3 571 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 VPS51Q9UID3 782 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 HMGCRP04035 888 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 ZNF23P17027 643 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 ZNF7P17097 686 aaPredicted RBP5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms