RNA–Protein interactions for RNA: ENST00000395898.3

VPS13C-204, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 11,012 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-204ENST00000395898 DCAF8L2P0C7V8 631 aa9.31□□□□□ -0.92
VPS13C-204ENST00000395898 NISCHQ9Y2I1 1504 aa8.97□□□□□ -0.97
VPS13C-204ENST00000395898 SUPT5HO00267 1087 aaKnown RBP8.81□□□□□ -1
VPS13C-204ENST00000395898 PELP1Q8IZL8 1130 aaKnown RBP8.67□□□□□ -1.02
VPS13C-204ENST00000395898 SHROOM4Q9ULL8 1493 aa8.62□□□□□ -1.03
VPS13C-204ENST00000395898 APLP2Q06481 763 aa8.57□□□□□ -1.04
VPS13C-204ENST00000395898 FAM9AQ8IZU1 332 aaPredicted RBP8.56□□□□□ -1.04
VPS13C-204ENST00000395898 EHMT2Q96KQ7 1210 aa8.47□□□□□ -1.05
VPS13C-204ENST00000395898 ZEB1P37275 1124 aaPredicted RBP8.31□□□□□ -1.08
VPS13C-204ENST00000395898 CCER1Q8TC90 406 aaPredicted RBP8.29□□□□□ -1.08
VPS13C-204ENST00000395898 CENPBP07199 599 aaPredicted RBP8.27□□□□□ -1.09
VPS13C-204ENST00000395898 PCGF6Q9BYE7 350 aa8.25□□□□□ -1.09
VPS13C-204ENST00000395898 TRIM41Q8WV44 630 aa8.25□□□□□ -1.09
VPS13C-204ENST00000395898 ERICH6Q7L0X2 663 aa8.22□□□□□ -1.09
VPS13C-204ENST00000395898 TTBK1Q5TCY1 1321 aaPredicted RBP8.2□□□□□ -1.1
VPS13C-204ENST00000395898 ATP1B4Q9UN42 357 aaPredicted RBP8.19□□□□□ -1.1
VPS13C-204ENST00000395898 UBTFP17480 764 aaKnown RBP8.16□□□□□ -1.1
VPS13C-204ENST00000395898 RANGAP1P46060 587 aaPredicted RBP8.15□□□□□ -1.1
VPS13C-204ENST00000395898 NEFLP07196 543 aa8.11□□□□□ -1.11
VPS13C-204ENST00000395898 MYT1Q01538 1121 aa8.04□□□□□ -1.12
VPS13C-204ENST00000395898 TRIM26Q12899 539 aaPredicted RBP8□□□□□ -1.13
VPS13C-204ENST00000395898 YTHDC1Q96MU7 727 aaKnown RBP7.93□□□□□ -1.14
VPS13C-204ENST00000395898 DAXXQ9UER7 740 aaPredicted RBP7.93□□□□□ -1.14
VPS13C-204ENST00000395898 MYT1LQ9UL68 1186 aa7.92□□□□□ -1.14
VPS13C-204ENST00000395898 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.9□□□□□ -1.14
VPS13C-204ENST00000395898 HNRNPUL2Q1KMD3 747 aaKnown RBP7.9□□□□□ -1.14
VPS13C-204ENST00000395898 PPARGC1BQ86YN6 1023 aaKnown RBP7.87□□□□□ -1.15
VPS13C-204ENST00000395898 ITGAEP38570 1179 aa7.85□□□□□ -1.15
VPS13C-204ENST00000395898 POLR3GLQ9BT43 218 aa7.82□□□□□ -1.16
VPS13C-204ENST00000395898 HRCP23327 699 aa7.81□□□□□ -1.16
VPS13C-204ENST00000395898 LOC105371045A0A1W2PR82 267 aa7.76□□□□□ -1.17
VPS13C-204ENST00000395898 SLC4A1APQ9BWU0 796 aaKnown RBP7.75□□□□□ -1.17
VPS13C-204ENST00000395898 CHIC1Q5VXU3 224 aa7.75□□□□□ -1.17
VPS13C-204ENST00000395898 ZNF316A6NFI3 1004 aaPredicted RBP7.71□□□□□ -1.17
VPS13C-204ENST00000395898 DIEXFQ68CQ4 756 aaKnown RBP7.71□□□□□ -1.17
VPS13C-204ENST00000395898 CLSPNQ9HAW4 1339 aa7.71□□□□□ -1.18
VPS13C-204ENST00000395898 FAM50AQ14320 339 aaKnown RBP7.7□□□□□ -1.18
VPS13C-204ENST00000395898 RTL5Q5HYW3 569 aaPredicted RBP7.68□□□□□ -1.18
VPS13C-204ENST00000395898 CNGB1Q14028 1251 aaPredicted RBP7.68□□□□□ -1.18
VPS13C-204ENST00000395898 TRIM52Q96A61 297 aa7.67□□□□□ -1.18
VPS13C-204ENST00000395898 ABCC9O60706 1549 aa7.66□□□□□ -1.18
VPS13C-204ENST00000395898 ANP32CO43423 234 aa7.62□□□□□ -1.19
VPS13C-204ENST00000395898 ZBTB47Q9UFB7 747 aaPredicted RBP7.62□□□□□ -1.19
VPS13C-204ENST00000395898 NEUROD1Q13562 356 aa7.6□□□□□ -1.19
VPS13C-204ENST00000395898 NEFMP07197 916 aa7.59□□□□□ -1.19
VPS13C-204ENST00000395898 PABPN1Q86U42 306 aaKnown RBP eCLIP7.59□□□□□ -1.19
VPS13C-204ENST00000395898 CDK11AQ9UQ88 783 aaPredicted RBP7.57□□□□□ -1.2
VPS13C-204ENST00000395898 FBLN2P98095 1184 aa7.55□□□□□ -1.2
VPS13C-204ENST00000395898 CCDC180Q9P1Z9 1646 aa7.54□□□□□ -1.2
VPS13C-204ENST00000395898 ZNF326Q5BKZ1 582 aaKnown RBP7.53□□□□□ -1.2
VPS13C-204ENST00000395898 CANXP27824 592 aaKnown RBP7.52□□□□□ -1.21
VPS13C-204ENST00000395898 SLC24A1O60721 1099 aa7.51□□□□□ -1.21
VPS13C-204ENST00000395898 BCANQ96GW7 911 aa7.5□□□□□ -1.21
VPS13C-204ENST00000395898 SCRIBQ14160 1630 aa7.5□□□□□ -1.21
VPS13C-204ENST00000395898 CSRNP3Q8WYN3 585 aa7.47□□□□□ -1.21
VPS13C-204ENST00000395898 GTF3C3Q9Y5Q9 886 aa7.47□□□□□ -1.21
VPS13C-204ENST00000395898 ANP32AP39687 249 aaKnown RBP7.46□□□□□ -1.22
VPS13C-204ENST00000395898 ESF1Q9H501 851 aaKnown RBP7.45□□□□□ -1.22
VPS13C-204ENST00000395898 P3H3Q8IVL6 736 aa7.43□□□□□ -1.22
VPS13C-204ENST00000395898 TONSLQ96HA7 1378 aa7.43□□□□□ -1.22
VPS13C-204ENST00000395898 ZNF777Q9ULD5 760 aaPredicted RBP7.42□□□□□ -1.22
VPS13C-204ENST00000395898 ANP32BQ92688 251 aaKnown RBP7.42□□□□□ -1.22
VPS13C-204ENST00000395898 UPF2Q9HAU5 1272 aaKnown RBP7.41□□□□□ -1.22
VPS13C-204ENST00000395898 ZCCHC6Q5VYS8 1495 aaKnown RBP7.4□□□□□ -1.23
VPS13C-204ENST00000395898 NPM1P06748 294 aaKnown RBP eCLIP7.4□□□□□ -1.23
VPS13C-204ENST00000395898 STAG3Q9UJ98 1225 aa7.4□□□□□ -1.23
VPS13C-204ENST00000395898 HSP90AA1P07900 732 aaKnown RBP7.38□□□□□ -1.23
VPS13C-204ENST00000395898 DCAF1Q9Y4B6 1507 aa7.38□□□□□ -1.23
VPS13C-204ENST00000395898 BCL11AQ9H165 835 aa7.38□□□□□ -1.23
VPS13C-204ENST00000395898 ACIN1Q9UKV3 1341 aaKnown RBP7.37□□□□□ -1.23
VPS13C-204ENST00000395898 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.36□□□□□ -1.23
VPS13C-204ENST00000395898 ARID3CA6NKF2 412 aa7.36□□□□□ -1.23
VPS13C-204ENST00000395898 RB1CC1Q8TDY2 1594 aa7.36□□□□□ -1.23
VPS13C-204ENST00000395898 TMC1Q8TDI8 760 aa7.34□□□□□ -1.23
VPS13C-204ENST00000395898 CHGAP10645 457 aaKnown RBP7.33□□□□□ -1.24
VPS13C-204ENST00000395898 TSPY4P0CV99 314 aa7.33□□□□□ -1.24
VPS13C-204ENST00000395898 TSPY10P0CW01 314 aa7.33□□□□□ -1.24
VPS13C-204ENST00000395898 HNRNPUQ00839 825 aaKnown RBP eCLIP7.33□□□□□ -1.24
VPS13C-204ENST00000395898 MTUS2Q5JR59 1369 aa7.31□□□□□ -1.24
VPS13C-204ENST00000395898 WDR43Q15061 677 aaKnown RBP eCLIP7.31□□□□□ -1.24
VPS13C-204ENST00000395898 FKBP8Q14318 412 aa7.31□□□□□ -1.24
VPS13C-204ENST00000395898 NPM2Q86SE8 214 aaKnown RBP7.3□□□□□ -1.24
VPS13C-204ENST00000395898 FAM9BQ8IZU0 186 aa7.3□□□□□ -1.24
VPS13C-204ENST00000395898 DDX10Q13206 875 aaKnown RBP7.29□□□□□ -1.24
VPS13C-204ENST00000395898 RSF1Q96T23 1441 aaPredicted RBP7.28□□□□□ -1.24
VPS13C-204ENST00000395898 CHMP7Q8WUX9 453 aaPredicted RBP7.28□□□□□ -1.24
VPS13C-204ENST00000395898 EEA1Q15075 1411 aa7.27□□□□□ -1.24
VPS13C-204ENST00000395898 CCDC136Q96JN2 1154 aa7.27□□□□□ -1.24
VPS13C-204ENST00000395898 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.27□□□□□ -1.255e-7■■■□□ 15.9
VPS13C-204ENST00000395898 NACADO15069 1562 aa7.27□□□□□ -1.25
VPS13C-204ENST00000395898 MYH16Q9H6N6 1097 aa7.26□□□□□ -1.25
VPS13C-204ENST00000395898 EIF4G2P78344 907 aaKnown RBP eCLIP7.25□□□□□ -1.25
VPS13C-204ENST00000395898 CHIC2Q9UKJ5 165 aa7.25□□□□□ -1.25
VPS13C-204ENST00000395898 GLIPR1L2Q4G1C9 344 aa7.25□□□□□ -1.25
VPS13C-204ENST00000395898 GOLGA3Q08378 1498 aa7.24□□□□□ -1.25
VPS13C-204ENST00000395898 SALL2Q9Y467 1007 aaPredicted RBP7.24□□□□□ -1.25
VPS13C-204ENST00000395898 CLIP1P30622 1438 aa7.24□□□□□ -1.25
VPS13C-204ENST00000395898 EIF5BO60841 1220 aaKnown RBP7.23□□□□□ -1.25
VPS13C-204ENST00000395898 MRS2Q9HD23 443 aa7.23□□□□□ -1.25
VPS13C-204ENST00000395898 KDM2AQ9Y2K7 1162 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms