RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 CDO1Q16878 200 aa26.3■■□□□ 1.8
SHMT1-207ENST00000580002 ATP13A4Q4VNC1 1196 aa26.3■■□□□ 1.8
SHMT1-207ENST00000580002 EFHC1Q5JVL4 640 aa26.3■■□□□ 1.8
SHMT1-207ENST00000580002 CC2D1AQ6P1N0 951 aaPredicted RBP26.3■■□□□ 1.8
SHMT1-207ENST00000580002 GPR65Q8IYL9 337 aa26.3■■□□□ 1.8
SHMT1-207ENST00000580002 TDHQ8IZJ6 230 aa26.3■■□□□ 1.8
SHMT1-207ENST00000580002 COG1Q8WTW3 980 aa26.3■■□□□ 1.8
SHMT1-207ENST00000580002 ALG3Q92685 438 aa26.3■■□□□ 1.8
SHMT1-207ENST00000580002 OSER1Q9NX31 292 aa26.3■■□□□ 1.8
SHMT1-207ENST00000580002 H3BNC9 293 aa26.3■■□□□ 1.8
SHMT1-207ENST00000580002 SPOPO43791 374 aa26.3■■□□□ 1.8
SHMT1-207ENST00000580002 FBXO21O94952 628 aa26.3■■□□□ 1.8
SHMT1-207ENST00000580002 RGS19P49795 217 aa26.3■■□□□ 1.8
SHMT1-207ENST00000580002 ZNF143P52747 638 aaPredicted RBP26.3■■□□□ 1.8
SHMT1-207ENST00000580002 YWHAZP63104 245 aaKnown RBP26.3■■□□□ 1.8
SHMT1-207ENST00000580002 PPP2R2DQ66LE6 453 aa26.3■■□□□ 1.8
SHMT1-207ENST00000580002 LILRA6Q6PI73 481 aa26.3■■□□□ 1.8
SHMT1-207ENST00000580002 MSRAQ9UJ68 235 aa26.3■■□□□ 1.8
SHMT1-207ENST00000580002 YIPF1Q9Y548 306 aa26.3■■□□□ 1.8
SHMT1-207ENST00000580002 IRAK3Q9Y616 596 aa26.3■■□□□ 1.8
SHMT1-207ENST00000580002 PATJQ8NI35 1801 aa26.29■■□□□ 1.8
SHMT1-207ENST00000580002 SLC38A8A6NNN8 435 aa26.29■■□□□ 1.8
SHMT1-207ENST00000580002 KLRC2P26717 231 aa26.29■■□□□ 1.8
SHMT1-207ENST00000580002 SMC1AQ14683 1233 aaKnown RBP26.29■■□□□ 1.8
SHMT1-207ENST00000580002 RPS6KA1Q15418 735 aa26.29■■□□□ 1.8
SHMT1-207ENST00000580002 AADACL2Q6P093 401 aa26.29■■□□□ 1.8
SHMT1-207ENST00000580002 DENND5BQ6ZUT9 1274 aa26.29■■□□□ 1.8
SHMT1-207ENST00000580002 GDPD5Q8WTR4 605 aa26.29■■□□□ 1.8
SHMT1-207ENST00000580002 SMARCAL1Q9NZC9 954 aa26.29■■□□□ 1.8
SHMT1-207ENST00000580002 IL37Q9NZH6 218 aa26.29■■□□□ 1.8
SHMT1-207ENST00000580002 EHD2Q9NZN4 543 aa26.29■■□□□ 1.8
SHMT1-207ENST00000580002 STK39Q9UEW8 545 aa26.29■■□□□ 1.8
SHMT1-207ENST00000580002 NUDT5Q9UKK9 219 aa26.29■■□□□ 1.8
SHMT1-207ENST00000580002 SNX12Q9UMY4 172 aa26.29■■□□□ 1.8
SHMT1-207ENST00000580002 MAGED2Q9UNF1 606 aaPredicted RBP26.29■■□□□ 1.8
SHMT1-207ENST00000580002 PER2O15055 1255 aa26.28■■□□□ 1.8
SHMT1-207ENST00000580002 LRCH4O75427 683 aa26.28■■□□□ 1.8
SHMT1-207ENST00000580002 LTFP02788 710 aa26.28■■□□□ 1.8
SHMT1-207ENST00000580002 SCNN1AP37088 669 aa26.28■■□□□ 1.8
SHMT1-207ENST00000580002 SSR1P43307 286 aaKnown RBP26.28■■□□□ 1.8
SHMT1-207ENST00000580002 DCAF6Q58WW2 860 aa26.28■■□□□ 1.8
SHMT1-207ENST00000580002 DCAF12L1Q5VU92 463 aa26.28■■□□□ 1.8
SHMT1-207ENST00000580002 OTUD1Q5VV17 481 aaPredicted RBP26.28■■□□□ 1.8
SHMT1-207ENST00000580002 BSPRYQ5W0U4 402 aa26.28■■□□□ 1.8
SHMT1-207ENST00000580002 ADAM32Q8TC27 787 aa26.28■■□□□ 1.8
SHMT1-207ENST00000580002 FNIP1Q8TF40 1166 aa26.28■■□□□ 1.8
SHMT1-207ENST00000580002 ACSF2Q96CM8 615 aaPredicted RBP26.28■■□□□ 1.8
SHMT1-207ENST00000580002 SPATA17Q96L03 361 aa26.28■■□□□ 1.8
SHMT1-207ENST00000580002 SLC2A13Q96QE2 648 aa26.28■■□□□ 1.8
SHMT1-207ENST00000580002 DDX23Q9BUQ8 820 aaKnown RBP26.28■■□□□ 1.8
SHMT1-207ENST00000580002 GMIPQ9P107 970 aa26.28■■□□□ 1.8
SHMT1-207ENST00000580002 SSX2IPQ9Y2D8 614 aa26.28■■□□□ 1.8
SHMT1-207ENST00000580002 A0A1W2PQH9 124 aa26.28■■□□□ 1.8
SHMT1-207ENST00000580002 PRRG1O14668 218 aa26.28■■□□□ 1.8
SHMT1-207ENST00000580002 HSF2BPO75031 334 aa26.28■■□□□ 1.8
SHMT1-207ENST00000580002 IL1R2P27930 398 aa26.28■■□□□ 1.8
SHMT1-207ENST00000580002 GJC1P36383 396 aa26.28■■□□□ 1.8
SHMT1-207ENST00000580002 TUFMP49411 452 aaKnown RBP26.28■■□□□ 1.8
SHMT1-207ENST00000580002 PEX5P50542 639 aa26.28■■□□□ 1.8
SHMT1-207ENST00000580002 RPL10AP62906 217 aaKnown RBP26.28■■□□□ 1.8
SHMT1-207ENST00000580002 UBE3AQ05086 875 aa26.28■■□□□ 1.8
SHMT1-207ENST00000580002 CALR3Q96L12 384 aaKnown RBP26.28■■□□□ 1.8
SHMT1-207ENST00000580002 OSBPL9Q96SU4 736 aa26.28■■□□□ 1.8
SHMT1-207ENST00000580002 TBCBQ99426 244 aa26.28■■□□□ 1.8
SHMT1-207ENST00000580002 PRO3102Q9H379 93 aa26.28■■□□□ 1.8
SHMT1-207ENST00000580002 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP26.28■■□□□ 1.8
SHMT1-207ENST00000580002 DAB1O75553 588 aa26.27■■□□□ 1.8
SHMT1-207ENST00000580002 TWF1Q12792 350 aa26.27■■□□□ 1.8
SHMT1-207ENST00000580002 PIGHQ14442 188 aaPredicted RBP26.27■■□□□ 1.8
SHMT1-207ENST00000580002 ADGRD2Q7Z7M1 963 aa26.27■■□□□ 1.8
SHMT1-207ENST00000580002 NIPA2Q8N8Q9 360 aa26.27■■□□□ 1.8
SHMT1-207ENST00000580002 CNPY3Q9BT09 278 aa26.27■■□□□ 1.8
SHMT1-207ENST00000580002 POPDC2Q9HBU9 364 aa26.27■■□□□ 1.8
SHMT1-207ENST00000580002 PCSK1NQ9UHG2 260 aa26.27■■□□□ 1.8
SHMT1-207ENST00000580002 ELF1P32519 619 aa26.26■■□□□ 1.79
SHMT1-207ENST00000580002 MATKP42679 507 aa26.26■■□□□ 1.79
SHMT1-207ENST00000580002 YWHAGP61981 247 aaKnown RBP eCLIP26.26■■□□□ 1.79
SHMT1-207ENST00000580002 TAF10Q12962 218 aa26.26■■□□□ 1.79
SHMT1-207ENST00000580002 ZNF211Q13398 564 aaPredicted RBP26.26■■□□□ 1.79
SHMT1-207ENST00000580002 RAB30Q15771 203 aa26.26■■□□□ 1.79
SHMT1-207ENST00000580002 RBM23Q86U06 439 aaKnown RBP26.26■■□□□ 1.79
SHMT1-207ENST00000580002 TCEAL8Q8IYN2 117 aa26.26■■□□□ 1.79
SHMT1-207ENST00000580002 SCML4Q8N228 414 aa26.26■■□□□ 1.79
SHMT1-207ENST00000580002 MS4A14Q96JA4 679 aa26.26■■□□□ 1.79
SHMT1-207ENST00000580002 SAMD11Q96NU1 681 aa26.26■■□□□ 1.79
SHMT1-207ENST00000580002 PEBP4Q96S96 227 aa26.26■■□□□ 1.79
SHMT1-207ENST00000580002 SLC28A3Q9HAS3 691 aa26.26■■□□□ 1.79
SHMT1-207ENST00000580002 KLHL11Q9NVR0 708 aa26.26■■□□□ 1.79
SHMT1-207ENST00000580002 SCML2Q9UQR0 700 aa26.26■■□□□ 1.79
SHMT1-207ENST00000580002 INSL5Q9Y5Q6 135 aa26.26■■□□□ 1.79
SHMT1-207ENST00000580002 SAR1BQ9Y6B6 198 aa26.26■■□□□ 1.79
SHMT1-207ENST00000580002 TRANK1O15050 2925 aa26.26■■□□□ 1.79
SHMT1-207ENST00000580002 DPYSL4O14531 572 aa26.25■■□□□ 1.79
SHMT1-207ENST00000580002 KCNK3O14649 394 aa26.25■■□□□ 1.79
SHMT1-207ENST00000580002 ADH1AP07327 375 aa26.25■■□□□ 1.79
SHMT1-207ENST00000580002 NCAM1P13591 858 aa26.25■■□□□ 1.79
SHMT1-207ENST00000580002 HMGA1P17096 107 aaKnown RBP26.25■■□□□ 1.79
SHMT1-207ENST00000580002 YWHAQP27348 245 aa26.25■■□□□ 1.79
SHMT1-207ENST00000580002 SDC4P31431 198 aa26.25■■□□□ 1.79
SHMT1-207ENST00000580002 SLC1A1P43005 524 aa26.25■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms