RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 NOMO1Q15155 1222 aa14.89□□□□□ -0.03
LIG1-202ENST00000427526 GPR142Q7Z601 462 aa14.89□□□□□ -0.03
LIG1-202ENST00000427526 ANKRD23Q86SG2 305 aa14.89□□□□□ -0.03
LIG1-202ENST00000427526 SLC44A1Q8WWI5 657 aa14.89□□□□□ -0.03
LIG1-202ENST00000427526 TMEM176AQ96HP8 235 aa14.89□□□□□ -0.03
LIG1-202ENST00000427526 SERAC1Q96JX3 654 aa14.89□□□□□ -0.03
LIG1-202ENST00000427526 CALN1Q9BXU9 219 aa14.89□□□□□ -0.03
LIG1-202ENST00000427526 KATNBL1Q9H079 304 aa14.89□□□□□ -0.03
LIG1-202ENST00000427526 CDT1Q9H211 546 aa14.89□□□□□ -0.03
LIG1-202ENST00000427526 PCNTO95613 3336 aa14.89□□□□□ -0.03
LIG1-202ENST00000427526 IL18RAPO95256 599 aa14.89□□□□□ -0.03
LIG1-202ENST00000427526 C22orf31O95567 290 aa14.89□□□□□ -0.03
LIG1-202ENST00000427526 NFICP08651 508 aa14.89□□□□□ -0.03
LIG1-202ENST00000427526 TROVE2P10155 538 aaKnown RBP eCLIP14.89□□□□□ -0.03
LIG1-202ENST00000427526 CALB2P22676 271 aa14.89□□□□□ -0.03
LIG1-202ENST00000427526 EPHB2P29323 1055 aa14.89□□□□□ -0.03
LIG1-202ENST00000427526 NEK3P51956 506 aa14.89□□□□□ -0.03
LIG1-202ENST00000427526 ZNF143P52747 638 aaPredicted RBP14.89□□□□□ -0.03
LIG1-202ENST00000427526 SEPT7Q16181 437 aaKnown RBP14.89□□□□□ -0.03
LIG1-202ENST00000427526 SH3PXD2AQ5TCZ1 1133 aa14.89□□□□□ -0.03
LIG1-202ENST00000427526 SPRYD7Q5W111 196 aa14.89□□□□□ -0.03
LIG1-202ENST00000427526 NPNTQ6UXI9 565 aa14.89□□□□□ -0.03
LIG1-202ENST00000427526 MORF4L1Q9UBU8 362 aa14.89□□□□□ -0.03
LIG1-202ENST00000427526 TNFSF13BQ9Y275 285 aa14.89□□□□□ -0.03
LIG1-202ENST00000427526 SLC45A1Q9Y2W3 748 aa14.89□□□□□ -0.03
LIG1-202ENST00000427526 KLHL33A6NCF5 533 aa14.88□□□□□ -0.03
LIG1-202ENST00000427526 UNCXA6NJT0 531 aa14.88□□□□□ -0.03
LIG1-202ENST00000427526 C1QAP02745 245 aa14.88□□□□□ -0.03
LIG1-202ENST00000427526 MT-ND3P03897 115 aa14.88□□□□□ -0.03
LIG1-202ENST00000427526 PTPN4P29074 926 aa14.88□□□□□ -0.03
LIG1-202ENST00000427526 GCLCP48506 637 aaPredicted RBP14.88□□□□□ -0.03
LIG1-202ENST00000427526 OVGP1Q12889 678 aa14.88□□□□□ -0.03
LIG1-202ENST00000427526 KBTBD12Q3ZCT8 623 aa14.88□□□□□ -0.03
LIG1-202ENST00000427526 TRNP1Q6NT89 227 aa14.88□□□□□ -0.03
LIG1-202ENST00000427526 CHSY1Q86X52 802 aa14.88□□□□□ -0.03
LIG1-202ENST00000427526 RPF1Q9H9Y2 349 aaKnown RBP14.88□□□□□ -0.03
LIG1-202ENST00000427526 KCNK13Q9HB14 408 aa14.88□□□□□ -0.03
LIG1-202ENST00000427526 VTA1Q9NP79 307 aa14.88□□□□□ -0.03
LIG1-202ENST00000427526 BATF3Q9NR55 127 aa14.88□□□□□ -0.03
LIG1-202ENST00000427526 ASNSD1Q9NWL6 643 aa14.88□□□□□ -0.03
LIG1-202ENST00000427526 STRNO43815 780 aa14.88□□□□□ -0.03
LIG1-202ENST00000427526 INHBEP58166 350 aa14.88□□□□□ -0.03
LIG1-202ENST00000427526 MBTD1Q05BQ5 628 aa14.88□□□□□ -0.03
LIG1-202ENST00000427526 PTK7Q13308 1070 aa14.88□□□□□ -0.03
LIG1-202ENST00000427526 RAB6CQ53S08 254 aa14.88□□□□□ -0.03
LIG1-202ENST00000427526 KIRREL3Q8IZU9 778 aa14.88□□□□□ -0.03
LIG1-202ENST00000427526 RAB6CQ9H0N0 254 aa14.88□□□□□ -0.03
LIG1-202ENST00000427526 USP29Q9HBJ7 922 aa14.88□□□□□ -0.03
LIG1-202ENST00000427526 DCTN4Q9UJW0 460 aa14.88□□□□□ -0.03
LIG1-202ENST00000427526 IQANK1A0A1B0GTG1 560 aa14.87□□□□□ -0.03
LIG1-202ENST00000427526 LACTBL1A8MY62 500 aa14.87□□□□□ -0.03
LIG1-202ENST00000427526 KBTBD13C9JR72 458 aa14.87□□□□□ -0.03
LIG1-202ENST00000427526 GPR25O00155 361 aa14.87□□□□□ -0.03
LIG1-202ENST00000427526 LPXNO60711 386 aa14.87□□□□□ -0.03
LIG1-202ENST00000427526 HMGCRP04035 888 aa14.87□□□□□ -0.03
LIG1-202ENST00000427526 CALRP27797 417 aaKnown RBP14.87□□□□□ -0.03
LIG1-202ENST00000427526 ZNF200P98182 395 aaPredicted RBP14.87□□□□□ -0.03
LIG1-202ENST00000427526 ROR1Q01973 937 aa14.87□□□□□ -0.03
LIG1-202ENST00000427526 TMEM132AQ24JP5 1023 aa14.87□□□□□ -0.03
LIG1-202ENST00000427526 DARS2Q6PI48 645 aaKnown RBP14.87□□□□□ -0.03
LIG1-202ENST00000427526 BZW1Q7L1Q6 419 aaKnown RBP14.87□□□□□ -0.03
LIG1-202ENST00000427526 ZC3H18Q86VM9 953 aaKnown RBP14.87□□□□□ -0.03
LIG1-202ENST00000427526 LRRC6Q86X45 466 aa14.87□□□□□ -0.03
LIG1-202ENST00000427526 ENDOVQ8N8Q3 282 aaKnown RBP14.87□□□□□ -0.03
LIG1-202ENST00000427526 C2orf69Q8N8R5 385 aa14.87□□□□□ -0.03
LIG1-202ENST00000427526 STK32AQ8WU08 396 aa14.87□□□□□ -0.03
LIG1-202ENST00000427526 VRTNQ9H8Y1 702 aa14.87□□□□□ -0.03
LIG1-202ENST00000427526 PNPLA8Q9NP80 782 aa14.87□□□□□ -0.03
LIG1-202ENST00000427526 CNTN3Q9P232 1028 aa14.87□□□□□ -0.03
LIG1-202ENST00000427526 RPL26L1Q9UNX3 145 aaKnown RBP14.87□□□□□ -0.03
LIG1-202ENST00000427526 HNRNPCL1O60812 293 aaKnown RBP14.87□□□□□ -0.03
LIG1-202ENST00000427526 TGDSO95455 350 aa14.87□□□□□ -0.03
LIG1-202ENST00000427526 TPBGLP0DKB5 382 aa14.87□□□□□ -0.03
LIG1-202ENST00000427526 FAAP100Q0VG06 881 aa14.87□□□□□ -0.03
LIG1-202ENST00000427526 PRKD1Q15139 912 aaPredicted RBP14.87□□□□□ -0.03
LIG1-202ENST00000427526 WASHC2DQ5SRD0 308 aa14.87□□□□□ -0.03
LIG1-202ENST00000427526 APOPT1Q96IL0 206 aa14.87□□□□□ -0.03
LIG1-202ENST00000427526 ADPGKQ9BRR6 497 aa14.87□□□□□ -0.03
LIG1-202ENST00000427526 C16orf70Q9BSU1 422 aa14.87□□□□□ -0.03
LIG1-202ENST00000427526 IFT122Q9HBG6 1241 aa14.87□□□□□ -0.03
LIG1-202ENST00000427526 ALG13Q9NP73 1137 aaKnown RBP14.87□□□□□ -0.03
LIG1-202ENST00000427526 C2CD4BA6NLJ0 364 aa14.87□□□□□ -0.03
LIG1-202ENST00000427526 E7ENQ6 273 aa14.87□□□□□ -0.03
LIG1-202ENST00000427526 M0QYV0 167 aa14.87□□□□□ -0.03
LIG1-202ENST00000427526 CHADO15335 359 aa14.87□□□□□ -0.03
LIG1-202ENST00000427526 AVILO75366 819 aa14.87□□□□□ -0.03
LIG1-202ENST00000427526 FAM155BO75949 473 aa14.87□□□□□ -0.03
LIG1-202ENST00000427526 ITGB3P05106 788 aa14.87□□□□□ -0.03
LIG1-202ENST00000427526 CDH6P55285 790 aa14.87□□□□□ -0.03
LIG1-202ENST00000427526 NAA25Q14CX7 972 aa14.87□□□□□ -0.03
LIG1-202ENST00000427526 FAM102AQ5T9C2 384 aaPredicted RBP14.87□□□□□ -0.03
LIG1-202ENST00000427526 PPTC7Q8NI37 304 aa14.87□□□□□ -0.03
LIG1-202ENST00000427526 SH3TC2Q8TF17 1288 aa14.87□□□□□ -0.03
LIG1-202ENST00000427526 MAML3Q96JK9 1138 aa14.87□□□□□ -0.03
LIG1-202ENST00000427526 ANKRD27Q96NW4 1050 aa14.87□□□□□ -0.03
LIG1-202ENST00000427526 MIPEPQ99797 713 aa14.87□□□□□ -0.03
LIG1-202ENST00000427526 CNPY3Q9BT09 278 aa14.87□□□□□ -0.03
LIG1-202ENST00000427526 TSSK1BQ9BXA7 367 aa14.87□□□□□ -0.03
LIG1-202ENST00000427526 TRIM55Q9BYV6 548 aa14.87□□□□□ -0.03
LIG1-202ENST00000427526 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms