RNA–Protein interactions for RNA: YLR440C

SEC39, Transcript of Component of the Dsl1p tethering complex, yeast

Gene SEC39, Length 2,130 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEC39	YLR440C	PHO87	P25360	923 aa		5.69	□□□□□ -1.5
SEC39	YLR440C	NIP100	P33420	868 aa		5.69	□□□□□ -1.5
SEC39	YLR440C	YKR023W	P36119	530 aa	Known RBP	5.69	□□□□□ -1.5
SEC39	YLR440C	YTA6	P40328	754 aa		5.69	□□□□□ -1.5
SEC39	YLR440C	VTI1	Q04338	217 aa		5.69	□□□□□ -1.5
SEC39	YLR440C	NDL1	Q06568	189 aa		5.69	□□□□□ -1.5
SEC39	YLR440C	IME2	P32581	645 aa		5.69	□□□□□ -1.5
SEC39	YLR440C	RTG2	P32608	588 aa	Known RBP	5.69	□□□□□ -1.5
SEC39	YLR440C	RAD26	P40352	1085 aa		5.69	□□□□□ -1.5
SEC39	YLR440C	DSN1	P40568	576 aa		5.69	□□□□□ -1.5
SEC39	YLR440C	GLN1	P32288	370 aa	Known RBP	5.68	□□□□□ -1.5
SEC39	YLR440C	BUD27	P43573	796 aa	Known RBP RIP-Chip data	5.68	□□□□□ -1.5	not detected
SEC39	YLR440C	RPL17B	P46990	184 aa	Known RBP	5.68	□□□□□ -1.5
SEC39	YLR440C	DSL1	P53847	754 aa		5.68	□□□□□ -1.5
SEC39	YLR440C	SVL3	Q03088	825 aa	Known RBP	5.68	□□□□□ -1.5
SEC39	YLR440C	PDR11	P40550	1411 aa		5.68	□□□□□ -1.5
SEC39	YLR440C	KAR3	P17119	729 aa		5.68	□□□□□ -1.5
SEC39	YLR440C	LAM1	P38851	1228 aa		5.68	□□□□□ -1.5
SEC39	YLR440C	BTN2	P53286	410 aa		5.68	□□□□□ -1.5
SEC39	YLR440C	DBP10	Q12389	995 aa	Known RBP	5.68	□□□□□ -1.5
SEC39	YLR440C	BRR1	Q99177	341 aa	Predicted RBP	5.68	□□□□□ -1.5
SEC39	YLR440C	UGA3	P26370	528 aa		5.67	□□□□□ -1.5
SEC39	YLR440C	DPB3	P27344	201 aa		5.67	□□□□□ -1.5
SEC39	YLR440C	ANP1	P32629	500 aa		5.67	□□□□□ -1.5
SEC39	YLR440C	ETP1	P38748	585 aa	Known RBP	5.67	□□□□□ -1.5
SEC39	YLR440C	HST2	P53686	357 aa		5.67	□□□□□ -1.5
SEC39	YLR440C	OYE2	Q03558	400 aa	Known RBP	5.67	□□□□□ -1.5
SEC39	YLR440C	SPO71	Q03868	1245 aa		5.67	□□□□□ -1.5
SEC39	YLR440C	TRS33	Q99394	268 aa		5.67	□□□□□ -1.5
SEC39	YLR440C	IKI3	Q06706	1349 aa	Known RBP	5.67	□□□□□ -1.5
SEC39	YLR440C	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	5.66	□□□□□ -1.5	not detected
SEC39	YLR440C	PSO2	P30620	661 aa		5.66	□□□□□ -1.5
SEC39	YLR440C	VPS24	P36095	224 aa	Known RBP	5.66	□□□□□ -1.5
SEC39	YLR440C	ESL2	P36168	1195 aa		5.66	□□□□□ -1.5
SEC39	YLR440C	UBP12	P39538	1254 aa		5.66	□□□□□ -1.5
SEC39	YLR440C	APP1	P53933	587 aa		5.66	□□□□□ -1.5
SEC39	YLR440C	MTC5	Q03897	1148 aa		5.66	□□□□□ -1.5
SEC39	YLR440C	SXM1	Q04175	944 aa	Known RBP	5.66	□□□□□ -1.5
SEC39	YLR440C	HMI1	Q12039	706 aa		5.66	□□□□□ -1.5
SEC39	YLR440C	KRE5	P22023	1365 aa		5.66	□□□□□ -1.5
SEC39	YLR440C	CFT1	Q06632	1357 aa	Known RBP	5.66	□□□□□ -1.5
SEC39	YLR440C	SEC23	P15303	768 aa	Known RBP	5.66	□□□□□ -1.5
SEC39	YLR440C	PPG1	P32838	368 aa		5.66	□□□□□ -1.5
SEC39	YLR440C	TIM54	P47045	478 aa		5.66	□□□□□ -1.5
SEC39	YLR440C	PAP2	P53632	584 aa	Known RBP	5.66	□□□□□ -1.5
SEC39	YLR440C	REX2	P54964	269 aa	Known RBP	5.66	□□□□□ -1.5
SEC39	YLR440C	SEN54	Q02825	467 aa	Predicted RBP	5.66	□□□□□ -1.5
SEC39	YLR440C	TRX2	P22803	104 aa	Known RBP	5.65	□□□□□ -1.5
SEC39	YLR440C	APN1	P22936	367 aa		5.65	□□□□□ -1.5
SEC39	YLR440C	NPL4	P33755	580 aa		5.65	□□□□□ -1.5
SEC39	YLR440C	ATG26	Q06321	1198 aa		5.65	□□□□□ -1.5
SEC39	YLR440C	UTP4	Q06679	776 aa	Known RBP	5.65	□□□□□ -1.5
SEC39	YLR440C	THS1	P04801	734 aa	Known RBP	5.65	□□□□□ -1.51
SEC39	YLR440C	KEX2	P13134	814 aa		5.65	□□□□□ -1.51
SEC39	YLR440C	SIT4	P20604	311 aa		5.65	□□□□□ -1.51
SEC39	YLR440C	PHO84	P25297	587 aa	Known RBP	5.65	□□□□□ -1.51
SEC39	YLR440C	SMY1	P32364	656 aa	Known RBP	5.65	□□□□□ -1.51
SEC39	YLR440C	COY1	P34237	679 aa		5.65	□□□□□ -1.51
SEC39	YLR440C	FUI1	P38196	639 aa		5.65	□□□□□ -1.51
SEC39	YLR440C	PEX21	P50091	288 aa		5.65	□□□□□ -1.51
SEC39	YLR440C	TAP42	Q04372	366 aa		5.65	□□□□□ -1.51
SEC39	YLR440C	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	5.65	□□□□□ -1.51	not detected
SEC39	YLR440C	RKM4	Q12504	494 aa		5.65	□□□□□ -1.51
SEC39	YLR440C	SSM4	P40318	1319 aa		5.64	□□□□□ -1.51
SEC39	YLR440C	HMG1	P12683	1054 aa		5.64	□□□□□ -1.51
SEC39	YLR440C	PKC1	P24583	1151 aa		5.64	□□□□□ -1.51
SEC39	YLR440C	YIL055C	P40523	627 aa	Known RBP	5.64	□□□□□ -1.51
SEC39	YLR440C	MRD1	Q06106	887 aa	Known RBP	5.64	□□□□□ -1.51
SEC39	YLR440C	LSO1	Q3E827	93 aa		5.64	□□□□□ -1.51
SEC39	YLR440C	VMA1	P17255	1071 aa	Known RBP	5.63	□□□□□ -1.51
SEC39	YLR440C	RKM3	P38222	552 aa		5.63	□□□□□ -1.51
SEC39	YLR440C	EFM2	P38347	419 aa		5.63	□□□□□ -1.51
SEC39	YLR440C	MEF2	P39677	819 aa		5.63	□□□□□ -1.51
SEC39	YLR440C	SWD1	P39706	426 aa		5.63	□□□□□ -1.51
SEC39	YLR440C	BDP1	P46678	594 aa		5.63	□□□□□ -1.51
SEC39	YLR440C	YNR029C	P53729	429 aa	Known RBP	5.63	□□□□□ -1.51
SEC39	YLR440C	GRC3	Q07845	632 aa		5.63	□□□□□ -1.51
SEC39	YLR440C	NAT1	P12945	854 aa	Known RBP	5.63	□□□□□ -1.51
SEC39	YLR440C	RPB4	P20433	221 aa	Predicted RBP	5.63	□□□□□ -1.51
SEC39	YLR440C	PEP12	P32854	288 aa		5.63	□□□□□ -1.51
SEC39	YLR440C	ATG19	P35193	415 aa		5.63	□□□□□ -1.51
SEC39	YLR440C	EXO84	P38261	753 aa		5.63	□□□□□ -1.51
SEC39	YLR440C	RRP8	P38961	392 aa	Known RBP	5.63	□□□□□ -1.51
SEC39	YLR440C	UTP18	P40362	594 aa	Predicted RBP	5.63	□□□□□ -1.51
SEC39	YLR440C	SDS3	P40505	327 aa		5.63	□□□□□ -1.51
SEC39	YLR440C	RTF1	P53064	558 aa		5.63	□□□□□ -1.51
SEC39	YLR440C	EAF7	P53911	425 aa	Known RBP	5.63	□□□□□ -1.51
SEC39	YLR440C	PNG1	Q02890	363 aa		5.63	□□□□□ -1.51
SEC39	YLR440C	SMD2	Q06217	110 aa	Known RBP	5.63	□□□□□ -1.51
SEC39	YLR440C	ARV1	Q06541	321 aa		5.63	□□□□□ -1.51
SEC39	YLR440C	PMT7	Q06644	662 aa		5.63	□□□□□ -1.51
SEC39	YLR440C	IRC3	Q06683	689 aa		5.63	□□□□□ -1.51
SEC39	YLR440C	BMS1	Q08965	1183 aa	Known RBP	5.63	□□□□□ -1.51
SEC39	YLR440C	YRM1	Q12340	786 aa		5.63	□□□□□ -1.51
SEC39	YLR440C	PET123	P17558	318 aa		5.62	□□□□□ -1.51
SEC39	YLR440C	SPT5	P27692	1063 aa	Known RBP	5.62	□□□□□ -1.51
SEC39	YLR440C	ZUO1	P32527	433 aa	Known RBP	5.62	□□□□□ -1.51
SEC39	YLR440C	GRX4	P32642	244 aa		5.62	□□□□□ -1.51
SEC39	YLR440C	ARB1	P40024	610 aa	Known RBP	5.62	□□□□□ -1.51
SEC39	YLR440C	VPS30	Q02948	557 aa		5.62	□□□□□ -1.51

Retrieved 100 of 5,963 RNA–protein pairs in 43.6 ms