RNA–Protein interactions for RNA: YKL010C

UFD4, Transcript of Ubiquitin-protein ligase (E3), yeastyeast

Gene UFD4, Length 4,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD4YKL010C LEU3P08638 886 aa2.62□□□□□ -1.99
UFD4YKL010C VPS24P36095 224 aaKnown RBP2.62□□□□□ -1.99
UFD4YKL010C SLN1P39928 1220 aaPredicted RBP2.62□□□□□ -1.99
UFD4YKL010C VPS70P47161 811 aa2.62□□□□□ -1.99
UFD4YKL010C CSI1Q04368 295 aa2.62□□□□□ -1.99
UFD4YKL010C TY1A-DR4O74302 440 aa2.62□□□□□ -1.99
UFD4YKL010C TY1A-HP0C2I4 478 aaKnown RBP2.62□□□□□ -1.99
UFD4YKL010C TY1A-AP0CX57 440 aa2.62□□□□□ -1.99
UFD4YKL010C TY1A-PR1P0CX58 440 aa2.62□□□□□ -1.99
UFD4YKL010C TY1A-ORP0CX59 440 aa2.62□□□□□ -1.99
UFD4YKL010C TY1A-PR2P0CX60 440 aa2.62□□□□□ -1.99
UFD4YKL010C TY1A-DR5P0CX65 440 aa2.62□□□□□ -1.99
UFD4YKL010C TY1A-ER2P0CX66 440 aa2.62□□□□□ -1.99
UFD4YKL010C TY1A-GR3P0CX67 440 aa2.62□□□□□ -1.99
UFD4YKL010C TY1A-LR1P0CX68 440 aa2.62□□□□□ -1.99
UFD4YKL010C TY1A-MR2P0CX69 440 aa2.62□□□□□ -1.99
UFD4YKL010C AIM9P40053 627 aaKnown RBP2.62□□□□□ -1.99
UFD4YKL010C TY1A-JR2P47099 440 aa2.62□□□□□ -1.99
UFD4YKL010C TY1A-DR1Q03856 440 aa2.62□□□□□ -1.99
UFD4YKL010C TY1A-ML1Q04706 440 aaKnown RBP2.62□□□□□ -1.99
UFD4YKL010C RGA2Q06407 1009 aa2.62□□□□□ -1.99
UFD4YKL010C TY1A-BRQ12217 440 aa2.62□□□□□ -1.99
UFD4YKL010C TY1A-NL2Q12470 440 aa2.62□□□□□ -1.99
UFD4YKL010C TY1A-GR2Q12485 440 aa2.62□□□□□ -1.99
UFD4YKL010C KNS1P32350 737 aaPredicted RBP2.62□□□□□ -1.99
UFD4YKL010C NPL4P33755 580 aa2.62□□□□□ -1.99
UFD4YKL010C CSE4P36012 229 aa2.62□□□□□ -1.99
UFD4YKL010C RGA1P39083 1007 aa2.62□□□□□ -1.99
UFD4YKL010C TUM1Q08686 304 aaKnown RBP2.62□□□□□ -1.99
UFD4YKL010C PDR18P53756 1333 aa2.62□□□□□ -1.99
UFD4YKL010C RGR1P19263 1082 aa2.62□□□□□ -1.99
UFD4YKL010C TEA1P47988 759 aa2.62□□□□□ -1.99
UFD4YKL010C MTC5Q03897 1148 aa2.62□□□□□ -1.99
UFD4YKL010C RFT1P38206 574 aaPredicted RBP2.61□□□□□ -1.99
UFD4YKL010C ADR1P07248 1323 aa2.61□□□□□ -1.99
UFD4YKL010C PXL1P36166 706 aa2.61□□□□□ -1.99
UFD4YKL010C CIR1P42940 261 aa2.61□□□□□ -1.99
UFD4YKL010C PMD1P32634 1753 aa2.61□□□□□ -1.99
UFD4YKL010C SEC2P17065 759 aa2.61□□□□□ -1.99
UFD4YKL010C CST6P40535 587 aa2.61□□□□□ -1.99
UFD4YKL010C THI12P42883 340 aa2.61□□□□□ -1.99
UFD4YKL010C THI5P43534 340 aa2.61□□□□□ -1.99
UFD4YKL010C THI11P47183 340 aa2.61□□□□□ -1.99
UFD4YKL010C HST1P53685 503 aa2.61□□□□□ -1.99
UFD4YKL010C NKP2Q06162 153 aa2.61□□□□□ -1.99
UFD4YKL010C THI13Q07748 340 aa2.61□□□□□ -1.99
UFD4YKL010C FLO1P32768 1537 aa2.61□□□□□ -1.99
UFD4YKL010C DAL5P15365 543 aa2.6□□□□□ -1.99
UFD4YKL010C FAR11P53917 953 aa2.6□□□□□ -1.99
UFD4YKL010C DNM1P54861 757 aa2.6□□□□□ -1.99
UFD4YKL010C NSE3Q05541 303 aa2.6□□□□□ -1.99
UFD4YKL010C YPL150WQ12152 901 aa2.6□□□□□ -1.99
UFD4YKL010C PRP5P21372 849 aaPredicted RBP2.6□□□□□ -1.99
UFD4YKL010C RAD24P32641 659 aa2.6□□□□□ -1.99
UFD4YKL010C DLD1P32891 587 aa2.6□□□□□ -1.99
UFD4YKL010C PSE1P32337 1089 aaKnown RBP2.6□□□□□ -1.99
UFD4YKL010C SSF1P38789 453 aaPredicted RBP2.6□□□□□ -1.99
UFD4YKL010C SPO22P40511 975 aa2.6□□□□□ -1.99
UFD4YKL010C HRQ1Q05549 1077 aa2.6□□□□□ -1.99
UFD4YKL010C LAM6Q08001 693 aa2.6□□□□□ -1.99
UFD4YKL010C TCB2P48231 1178 aa2.6□□□□□ -1.99
UFD4YKL010C BMS1Q08965 1183 aaKnown RBP2.6□□□□□ -1.99
UFD4YKL010C MRP7P12687 371 aa2.59□□□□□ -1.99
UFD4YKL010C KTR3P38130 404 aaPredicted RBP2.59□□□□□ -1.99
UFD4YKL010C KRI1P42846 591 aaKnown RBP2.59□□□□□ -1.99
UFD4YKL010C MSB3P48566 633 aaPredicted RBP2.59□□□□□ -1.99
UFD4YKL010C YPR109WQ06104 294 aa2.59□□□□□ -1.99
UFD4YKL010C PHM7Q12252 991 aa2.59□□□□□ -1.99
UFD4YKL010C RPL22AP05749 121 aaKnown RBP2.59□□□□□ -2
UFD4YKL010C ARG8P18544 423 aa2.59□□□□□ -2
UFD4YKL010C AAP1P37898 856 aaKnown RBP2.59□□□□□ -2
UFD4YKL010C UBP12P39538 1254 aa2.59□□□□□ -2
UFD4YKL010C PUF6Q04373 656 aaKnown RBP2.59□□□□□ -2
UFD4YKL010C SRS2P12954 1174 aa2.58□□□□□ -2
UFD4YKL010C MBR1P23493 339 aa2.58□□□□□ -2
UFD4YKL010C OSH3P38713 996 aaKnown RBP2.58□□□□□ -2
UFD4YKL010C YNG2P38806 282 aaKnown RBP2.58□□□□□ -2
UFD4YKL010C MDG1P53885 366 aa2.58□□□□□ -2
UFD4YKL010C GAS4Q08271 471 aa2.58□□□□□ -2
UFD4YKL010C TCB1Q12466 1186 aa2.58□□□□□ -2
UFD4YKL010C ERG12P07277 443 aa2.58□□□□□ -2
UFD4YKL010C CLB5P30283 435 aa2.58□□□□□ -2
UFD4YKL010C ECM21P38167 1117 aaKnown RBP2.58□□□□□ -2
UFD4YKL010C BRN1P38170 754 aa2.58□□□□□ -2
UFD4YKL010C DSF2P38213 736 aa2.58□□□□□ -2
UFD4YKL010C YLR407WQ06070 228 aa2.58□□□□□ -2
UFD4YKL010C OPI1P21957 404 aa2.58□□□□□ -2
UFD4YKL010C YPR204WQ08995 1032 aa2.58□□□□□ -2
UFD4YKL010C PBS2P08018 668 aa2.58□□□□□ -2
UFD4YKL010C RNR2P09938 399 aaKnown RBP2.58□□□□□ -2
UFD4YKL010C BUB1P41695 1021 aaKnown RBP RIP-Chip data2.58□□□□□ -2not detected
UFD4YKL010C XKS1P42826 600 aa2.58□□□□□ -2
UFD4YKL010C ITC1P53125 1264 aa2.58□□□□□ -2
UFD4YKL010C ADE16P54113 591 aaKnown RBP2.58□□□□□ -2
UFD4YKL010C PKH3Q03306 898 aaPredicted RBP2.58□□□□□ -2
UFD4YKL010C TAF13P11747 167 aa2.57□□□□□ -2
UFD4YKL010C OSM1P21375 501 aaKnown RBP2.57□□□□□ -2
UFD4YKL010C EAF7P53911 425 aaKnown RBP2.57□□□□□ -2
UFD4YKL010C RKM3P38222 552 aa2.57□□□□□ -2
UFD4YKL010C FUN12P39730 1002 aaKnown RBP2.57□□□□□ -2
Retrieved 100 of 5,963 RNA–protein pairs in 55 ms