RNA–Protein interactions for RNA: YDR228C

PCF11, Transcript of mRNA 3' end processing factor, yeast

Gene PCF11, Length 1,881 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PCF11	YDR228C	PUF6	Q04373	656 aa	Known RBP	4.14	□□□□□ -1.75
PCF11	YDR228C	CWH41	P53008	833 aa		4.13	□□□□□ -1.75
PCF11	YDR228C	YNR040W	P53736	256 aa		4.13	□□□□□ -1.75
PCF11	YDR228C	NOB1	Q08444	459 aa	Known RBP	4.13	□□□□□ -1.75
PCF11	YDR228C	YPR053C	Q6Q5F3	151 aa		4.13	□□□□□ -1.75
PCF11	YDR228C	MRPL33	P20084	86 aa		4.13	□□□□□ -1.75
PCF11	YDR228C	NCL1	P38205	684 aa	Known RBP	4.13	□□□□□ -1.75
PCF11	YDR228C	APM2	P38700	605 aa		4.13	□□□□□ -1.75
PCF11	YDR228C	QDR2	P40474	542 aa		4.13	□□□□□ -1.75
PCF11	YDR228C	PRK1	P40494	810 aa		4.13	□□□□□ -1.75
PCF11	YDR228C	CWC15	Q03772	175 aa	Known RBP	4.13	□□□□□ -1.75
PCF11	YDR228C	SSA4	P22202	642 aa	Known RBP	4.12	□□□□□ -1.75
PCF11	YDR228C	MET1	P36150	593 aa		4.12	□□□□□ -1.75
PCF11	YDR228C	YCK2	P23292	546 aa	Known RBP	4.11	□□□□□ -1.75
PCF11	YDR228C	VMA3	P25515	160 aa		4.11	□□□□□ -1.75
PCF11	YDR228C	NAB2	P32505	525 aa	Known RBP RIP-Chip data	4.11	□□□□□ -1.75	RIP-Chip
PCF11	YDR228C	BOI2	P39969	1040 aa		4.11	□□□□□ -1.75
PCF11	YDR228C	ALD4	P46367	519 aa	Known RBP	4.11	□□□□□ -1.75
PCF11	YDR228C	YNR014W	P53719	212 aa		4.11	□□□□□ -1.75
PCF11	YDR228C	YMR187C	Q03236	431 aa		4.11	□□□□□ -1.75
PCF11	YDR228C	YML083C	Q04526	418 aa		4.11	□□□□□ -1.75
PCF11	YDR228C	SRS2	P12954	1174 aa		4.1	□□□□□ -1.75
PCF11	YDR228C	YER156C	P40093	338 aa	Known RBP	4.1	□□□□□ -1.75
PCF11	YDR228C	ITC1	P53125	1264 aa		4.1	□□□□□ -1.75
PCF11	YDR228C	YDR215C	Q12240	137 aa		4.1	□□□□□ -1.75
PCF11	YDR228C	YOR296W	Q08748	1289 aa		4.09	□□□□□ -1.75
PCF11	YDR228C	IDI1	P15496	288 aa		4.09	□□□□□ -1.76
PCF11	YDR228C	DYS1	P38791	387 aa		4.09	□□□□□ -1.76
PCF11	YDR228C	NAR1	P23503	491 aa	Known RBP	4.08	□□□□□ -1.76
PCF11	YDR228C	ISC10	P32645	267 aa		4.08	□□□□□ -1.76
PCF11	YDR228C	FOX2	Q02207	900 aa	Known RBP	4.08	□□□□□ -1.76
PCF11	YDR228C	PUN1	Q06991	263 aa		4.08	□□□□□ -1.76
PCF11	YDR228C	RLF2	Q12495	606 aa		4.08	□□□□□ -1.76
PCF11	YDR228C	MRP10	O75012	95 aa		4.07	□□□□□ -1.76
PCF11	YDR228C	KTR2	P33550	425 aa		4.07	□□□□□ -1.76
PCF11	YDR228C	PGM2	P37012	569 aa	Known RBP	4.07	□□□□□ -1.76
PCF11	YDR228C	LDH1	P38139	375 aa		4.07	□□□□□ -1.76
PCF11	YDR228C	GIP1	P38229	639 aa		4.07	□□□□□ -1.76
PCF11	YDR228C	SLN1	P39928	1220 aa	Predicted RBP	4.07	□□□□□ -1.76
PCF11	YDR228C	GIS4	Q04233	774 aa		4.07	□□□□□ -1.76
PCF11	YDR228C	APC11	Q12157	165 aa		4.07	□□□□□ -1.76
PCF11	YDR228C	NHA1	Q99271	985 aa		4.07	□□□□□ -1.76
PCF11	YDR228C	BSD2	P38356	321 aa		4.07	□□□□□ -1.76
PCF11	YDR228C	TPS3	P38426	1054 aa	Known RBP	4.07	□□□□□ -1.76
PCF11	YDR228C	SUB2	Q07478	446 aa	Known RBP	4.07	□□□□□ -1.76
PCF11	YDR228C	ISW1	P38144	1129 aa		4.06	□□□□□ -1.76
PCF11	YDR228C	ALG14	P38242	237 aa		4.06	□□□□□ -1.76
PCF11	YDR228C	PNP1	Q05788	311 aa		4.06	□□□□□ -1.76
PCF11	YDR228C	MSN1	P22148	382 aa		4.05	□□□□□ -1.76
PCF11	YDR228C	YIL165C	P40446	119 aa		4.05	□□□□□ -1.76
PCF11	YDR228C	BOI1	P38041	980 aa	Known RBP	4.05	□□□□□ -1.76
PCF11	YDR228C	AMN1	P38285	549 aa	Predicted RBP	4.05	□□□□□ -1.76
PCF11	YDR228C	BUD9	P53226	547 aa		4.05	□□□□□ -1.76
PCF11	YDR228C	LSO1	Q3E827	93 aa		4.05	□□□□□ -1.76
PCF11	YDR228C	SLP1	Q12232	587 aa		4.04	□□□□□ -1.76
PCF11	YDR228C	PRY1	P47032	299 aa		4.03	□□□□□ -1.76
PCF11	YDR228C	EMG1	Q06287	252 aa	Known RBP	4.03	□□□□□ -1.76
PCF11	YDR228C	MCA1	Q08601	432 aa		4.03	□□□□□ -1.76
PCF11	YDR228C	HXT8	P40886	569 aa		4.03	□□□□□ -1.77
PCF11	YDR228C	AI3	P03877	415 aa		4.02	□□□□□ -1.77
PCF11	YDR228C	RGD2	P43556	714 aa		4.02	□□□□□ -1.77
PCF11	YDR228C	RRN6	P32786	894 aa		4.01	□□□□□ -1.77
PCF11	YDR228C	TAT1	P38085	619 aa		4.01	□□□□□ -1.77
PCF11	YDR228C	NTA1	P40354	457 aa		4.01	□□□□□ -1.77
PCF11	YDR228C	LSB6	P42951	607 aa		4.01	□□□□□ -1.77
PCF11	YDR228C	RSC2	Q06488	889 aa		4.01	□□□□□ -1.77
PCF11	YDR228C	PGM1	P33401	570 aa	Known RBP	4.01	□□□□□ -1.77
PCF11	YDR228C	BOL3	P39724	118 aa		4.01	□□□□□ -1.77
PCF11	YDR228C	PPT1	P53043	513 aa		4.01	□□□□□ -1.77
PCF11	YDR228C	YPL034W	Q03083	165 aa		4.01	□□□□□ -1.77
PCF11	YDR228C	TY4B-P	A0A0B7P3V8	1104 aa		4	□□□□□ -1.77
PCF11	YDR228C	SFA1	P32771	386 aa		4	□□□□□ -1.77
PCF11	YDR228C	YBR287W	P38355	427 aa		4	□□□□□ -1.77
PCF11	YDR228C	TY4A-H	Q6Q5P6	413 aa		4	□□□□□ -1.77
PCF11	YDR228C	RPB10	P22139	70 aa		3.99	□□□□□ -1.77
PCF11	YDR228C	RRM3	P38766	723 aa		3.99	□□□□□ -1.77
PCF11	YDR228C	INP51	P40559	946 aa	Known RBP	3.99	□□□□□ -1.77
PCF11	YDR228C	BIO5	P53744	561 aa	Known RBP	3.99	□□□□□ -1.77
PCF11	YDR228C	SAC7	P17121	654 aa		3.98	□□□□□ -1.77
PCF11	YDR228C	FIR1	P40020	876 aa		3.98	□□□□□ -1.77
PCF11	YDR228C	GIP2	P40036	548 aa		3.98	□□□□□ -1.77
PCF11	YDR228C	ARI1	P53111	347 aa	Known RBP	3.98	□□□□□ -1.77
PCF11	YDR228C	GAS5	Q08193	484 aa		3.98	□□□□□ -1.77
PCF11	YDR228C	SOG2	Q08817	791 aa		3.98	□□□□□ -1.77
PCF11	YDR228C	TFA2	P36145	328 aa		3.98	□□□□□ -1.77
PCF11	YDR228C	AIM46	P38885	310 aa		3.98	□□□□□ -1.77
PCF11	YDR228C	ALD3	P54114	506 aa		3.98	□□□□□ -1.77
PCF11	YDR228C	FUR4	P05316	633 aa	Known RBP	3.97	□□□□□ -1.77
PCF11	YDR228C	HVG1	P0CE11	249 aa		3.97	□□□□□ -1.77
PCF11	YDR228C	SUT1	P53032	299 aa	Known RBP	3.97	□□□□□ -1.77
PCF11	YDR228C	GUP1	P53154	560 aa		3.97	□□□□□ -1.77
PCF11	YDR228C	TIF6	Q12522	245 aa	Known RBP	3.97	□□□□□ -1.77
PCF11	YDR228C	SBP1	P10080	294 aa	Known RBP	3.96	□□□□□ -1.77
PCF11	YDR228C	FUS1	P11710	512 aa		3.96	□□□□□ -1.77
PCF11	YDR228C	SMC1	P32908	1225 aa		3.96	□□□□□ -1.77
PCF11	YDR228C	IRS4	P36115	615 aa	Known RBP	3.96	□□□□□ -1.77
PCF11	YDR228C	TED1	P40533	473 aa		3.96	□□□□□ -1.77
PCF11	YDR228C	LEM3	P42838	414 aa		3.96	□□□□□ -1.77
PCF11	YDR228C	SOK2	P53438	785 aa	Predicted RBP	3.96	□□□□□ -1.77
PCF11	YDR228C	TY1A-NL1	Q12391	440 aa	Known RBP	3.96	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 36.3 ms