RNA–Protein interactions for RNA: ENST00000589706.1

SMAD4-208, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 563 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-208ENST00000589706 ERCC6L2Q5T890 1561 aa9.24□□□□□ -0.93
SMAD4-208ENST00000589706 SYNJ2O15056 1496 aa9.23□□□□□ -0.93
SMAD4-208ENST00000589706 QPCTQ16769 361 aa9.23□□□□□ -0.93
SMAD4-208ENST00000589706 GDPD2Q9HCC8 539 aa9.23□□□□□ -0.93
SMAD4-208ENST00000589706 HECW2Q9P2P5 1572 aa9.22□□□□□ -0.93
SMAD4-208ENST00000589706 SOCS7O14512 581 aa9.22□□□□□ -0.93
SMAD4-208ENST00000589706 WWC1Q8IX03 1113 aa9.22□□□□□ -0.93
SMAD4-208ENST00000589706 RDH13Q8NBN7 331 aa9.22□□□□□ -0.93
SMAD4-208ENST00000589706 PRM3Q9NNZ6 103 aa9.22□□□□□ -0.93
SMAD4-208ENST00000589706 SCUBE2Q9NQ36 999 aa9.22□□□□□ -0.93
SMAD4-208ENST00000589706 PCDHB15Q9Y5E8 787 aa9.22□□□□□ -0.93
SMAD4-208ENST00000589706 POTEB2H3BUK9 544 aa9.21□□□□□ -0.94
SMAD4-208ENST00000589706 SMAPO00193 183 aa9.21□□□□□ -0.94
SMAD4-208ENST00000589706 AP1G2O75843 785 aa9.21□□□□□ -0.94
SMAD4-208ENST00000589706 KDM6BO15054 1643 aa9.2□□□□□ -0.94
SMAD4-208ENST00000589706 NUTM2BA6NNL0 878 aaPredicted RBP9.2□□□□□ -0.94
SMAD4-208ENST00000589706 NUTM2EB1AL46 878 aaPredicted RBP9.2□□□□□ -0.94
SMAD4-208ENST00000589706 KDM4AO75164 1064 aa9.2□□□□□ -0.94
SMAD4-208ENST00000589706 RTL5Q5HYW3 569 aaPredicted RBP9.2□□□□□ -0.94
SMAD4-208ENST00000589706 NUTM2DQ5VT03 806 aaPredicted RBP9.2□□□□□ -0.94
SMAD4-208ENST00000589706 NUTM2AQ8IVF1 878 aaPredicted RBP9.2□□□□□ -0.94
SMAD4-208ENST00000589706 GRIN2BQ13224 1484 aa9.2□□□□□ -0.94
SMAD4-208ENST00000589706 ZBTB7CA1YPR0 619 aa9.19□□□□□ -0.94
SMAD4-208ENST00000589706 ABL2P42684 1182 aa9.19□□□□□ -0.94
SMAD4-208ENST00000589706 PROX2Q3B8N5 592 aa9.19□□□□□ -0.94
SMAD4-208ENST00000589706 PRPF38BQ5VTL8 546 aaKnown RBP9.19□□□□□ -0.94
SMAD4-208ENST00000589706 MAMSTRQ6ZN01 415 aa9.19□□□□□ -0.94
SMAD4-208ENST00000589706 CCDC88BA6NC98 1476 aa9.19□□□□□ -0.94
SMAD4-208ENST00000589706 LMTK3Q96Q04 1460 aa9.19□□□□□ -0.94
SMAD4-208ENST00000589706 WDR97A6NE52 1622 aa9.18□□□□□ -0.94
SMAD4-208ENST00000589706 USP46P62068 366 aa9.18□□□□□ -0.94
SMAD4-208ENST00000589706 ABCC10Q5T3U5 1492 aa9.18□□□□□ -0.94
SMAD4-208ENST00000589706 RSPH4AQ5TD94 716 aa9.18□□□□□ -0.94
SMAD4-208ENST00000589706 CABLES1Q8TDN4 633 aa9.18□□□□□ -0.94
SMAD4-208ENST00000589706 HOXB1P14653 301 aaPredicted RBP9.17□□□□□ -0.94
SMAD4-208ENST00000589706 KCNK17Q96T54 332 aa9.17□□□□□ -0.94
SMAD4-208ENST00000589706 TBC1D2BQ9UPU7 963 aa9.17□□□□□ -0.94
SMAD4-208ENST00000589706 ADGRL1O94910 1474 aa9.16□□□□□ -0.94
SMAD4-208ENST00000589706 SNPHO15079 494 aa9.16□□□□□ -0.94
SMAD4-208ENST00000589706 HOXA2O43364 376 aa9.16□□□□□ -0.94
SMAD4-208ENST00000589706 USP17L8P0C7I0 530 aa9.16□□□□□ -0.94
SMAD4-208ENST00000589706 GCGRP47871 477 aa9.16□□□□□ -0.94
SMAD4-208ENST00000589706 ZBTB3Q9H5J0 574 aa9.16□□□□□ -0.94
SMAD4-208ENST00000589706 FDX1P10109 184 aa9.15□□□□□ -0.94
SMAD4-208ENST00000589706 CALR3Q96L12 384 aaKnown RBP9.15□□□□□ -0.94
SMAD4-208ENST00000589706 KCNH8Q96L42 1107 aa9.15□□□□□ -0.94
SMAD4-208ENST00000589706 TRAIPQ9BWF2 469 aa9.15□□□□□ -0.94
SMAD4-208ENST00000589706 KIAA1468Q9P260 1216 aa9.15□□□□□ -0.94
SMAD4-208ENST00000589706 CEP170Q5SW79 1584 aa9.15□□□□□ -0.95
SMAD4-208ENST00000589706 NECTIN2Q92692 538 aa9.14□□□□□ -0.95
SMAD4-208ENST00000589706 POM121CA8CG34 1229 aa9.13□□□□□ -0.95
SMAD4-208ENST00000589706 SLC10A3P09131 477 aa9.12□□□□□ -0.95
SMAD4-208ENST00000589706 SWT1Q5T5J6 900 aaKnown RBP9.12□□□□□ -0.95
SMAD4-208ENST00000589706 ILDR2Q71H61 639 aa9.12□□□□□ -0.95
SMAD4-208ENST00000589706 GLMNQ92990 594 aa9.12□□□□□ -0.95
SMAD4-208ENST00000589706 ZBED2Q9BTP6 218 aa9.12□□□□□ -0.95
SMAD4-208ENST00000589706 NDUFB9Q9Y6M9 179 aa9.12□□□□□ -0.95
SMAD4-208ENST00000589706 FGD5Q6ZNL6 1462 aa9.12□□□□□ -0.95
SMAD4-208ENST00000589706 GJD4Q96KN9 370 aaPredicted RBP9.11□□□□□ -0.95
SMAD4-208ENST00000589706 PCDHGC3Q9UN70 934 aa9.11□□□□□ -0.95
SMAD4-208ENST00000589706 DIP2BQ9P265 1576 aa9.11□□□□□ -0.95
SMAD4-208ENST00000589706 TSPOAP1O95153 1857 aa9.11□□□□□ -0.95
SMAD4-208ENST00000589706 GUCA2AQ02747 115 aa9.1□□□□□ -0.95
SMAD4-208ENST00000589706 PBRM1Q86U86 1689 aa9.1□□□□□ -0.95
SMAD4-208ENST00000589706 PPP1R15AO75807 674 aaPredicted RBP9.09□□□□□ -0.95
SMAD4-208ENST00000589706 RETREG2Q8NC44 543 aa9.09□□□□□ -0.95
SMAD4-208ENST00000589706 HLA-CQ95604 372 aa9.09□□□□□ -0.95
SMAD4-208ENST00000589706 RABGEF1Q9UJ41 708 aa9.09□□□□□ -0.95
SMAD4-208ENST00000589706 MAPKBP1O60336 1514 aa9.09□□□□□ -0.95
SMAD4-208ENST00000589706 SHROOM2Q13796 1616 aa9.09□□□□□ -0.95
SMAD4-208ENST00000589706 PSEN2P49810 448 aa9.08□□□□□ -0.96
SMAD4-208ENST00000589706 HDGFP51858 240 aaKnown RBP9.08□□□□□ -0.96
SMAD4-208ENST00000589706 CTDSPL2Q05D32 466 aa9.08□□□□□ -0.96
SMAD4-208ENST00000589706 MTMR2Q13614 643 aa9.08□□□□□ -0.96
SMAD4-208ENST00000589706 KCTD17Q8N5Z5 321 aa9.08□□□□□ -0.96
SMAD4-208ENST00000589706 GRIN2AQ12879 1464 aa9.08□□□□□ -0.96
SMAD4-208ENST00000589706 IRF5Q13568 498 aa9.07□□□□□ -0.96
SMAD4-208ENST00000589706 WASHC4Q2M389 1173 aa9.07□□□□□ -0.96
SMAD4-208ENST00000589706 HELBQ8NG08 1087 aaPredicted RBP9.07□□□□□ -0.96
SMAD4-208ENST00000589706 ACIN1Q9UKV3 1341 aaKnown RBP9.06□□□□□ -0.96
SMAD4-208ENST00000589706 NUP160Q12769 1436 aa9.06□□□□□ -0.96
SMAD4-208ENST00000589706 SLC4A3P48751 1232 aa9.06□□□□□ -0.96
SMAD4-208ENST00000589706 GRIPAP1Q4V328 841 aa9.06□□□□□ -0.96
SMAD4-208ENST00000589706 HDGFL1Q5TGJ6 251 aa9.06□□□□□ -0.96
SMAD4-208ENST00000589706 SLC4A5Q9BY07 1137 aa9.06□□□□□ -0.96
SMAD4-208ENST00000589706 TRIM34Q9BYJ4 488 aa9.06□□□□□ -0.96
SMAD4-208ENST00000589706 HMX1Q9NP08 348 aaPredicted RBP9.06□□□□□ -0.96
SMAD4-208ENST00000589706 SEPT9Q9UHD8 586 aaPredicted RBP9.06□□□□□ -0.96
SMAD4-208ENST00000589706 PRG4Q92954 1404 aaPredicted RBP9.05□□□□□ -0.96
SMAD4-208ENST00000589706 TSC1Q92574 1164 aa9.05□□□□□ -0.96
SMAD4-208ENST00000589706 CCDC9Q9Y3X0 531 aaKnown RBP9.05□□□□□ -0.96
SMAD4-208ENST00000589706 ARHGAP33O14559 1287 aa9.04□□□□□ -0.96
SMAD4-208ENST00000589706 RANGAP1P46060 587 aaPredicted RBP9.04□□□□□ -0.96
SMAD4-208ENST00000589706 AEBP1Q8IUX7 1158 aa9.04□□□□□ -0.96
SMAD4-208ENST00000589706 LRRN4Q8WUT4 740 aa9.04□□□□□ -0.96
SMAD4-208ENST00000589706 DISP3Q9P2K9 1392 aa9.03□□□□□ -0.96
SMAD4-208ENST00000589706 CFAP99D6REC4 459 aa9.03□□□□□ -0.96
SMAD4-208ENST00000589706 C6orf229H3BNL8 230 aa9.03□□□□□ -0.96
SMAD4-208ENST00000589706 GPR37L1O60883 481 aa9.03□□□□□ -0.96
SMAD4-208ENST00000589706 FAM98CQ17RN3 349 aaKnown RBP9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms