RNA–Protein interactions for RNA: ENST00000589706.1

SMAD4-208, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 563 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-208ENST00000589706 CHIC1Q5VXU3 224 aa19.95■□□□□ 0.78
SMAD4-208ENST00000589706 AEBP2Q6ZN18 517 aaPredicted RBP19.78■□□□□ 0.76
SMAD4-208ENST00000589706 PHF23Q9BUL5 403 aaPredicted RBP17.62■□□□□ 0.41
SMAD4-208ENST00000589706 SENP3Q9H4L4 574 aaPredicted RBP16.67■□□□□ 0.26
SMAD4-208ENST00000589706 PLPPR3Q6T4P5 718 aa16.49■□□□□ 0.23
SMAD4-208ENST00000589706 ADRA2BP18089 450 aa15.43■□□□□ 0.06
SMAD4-208ENST00000589706 FOXD1Q16676 465 aa15.4■□□□□ 0.06
SMAD4-208ENST00000589706 PPP6R1Q9UPN7 881 aa15.34■□□□□ 0.05
SMAD4-208ENST00000589706 KCNA4P22459 653 aa15.01□□□□□ -0.01
SMAD4-208ENST00000589706 EHMT2Q96KQ7 1210 aa14.74□□□□□ -0.05
SMAD4-208ENST00000589706 PIAS4Q8N2W9 510 aaPredicted RBP14.68□□□□□ -0.06
SMAD4-208ENST00000589706 PPP4R3CPQ6ZMV5 832 aa14.62□□□□□ -0.07
SMAD4-208ENST00000589706 NCBP3Q53F19 620 aaKnown RBP14.42□□□□□ -0.1
SMAD4-208ENST00000589706 SLC4A1APQ9BWU0 796 aaKnown RBP14.41□□□□□ -0.1
SMAD4-208ENST00000589706 CSRNP3Q8WYN3 585 aa14.29□□□□□ -0.12
SMAD4-208ENST00000589706 NPM3O75607 178 aaKnown RBP14.21□□□□□ -0.13
SMAD4-208ENST00000589706 CNKSR2Q8WXI2 1034 aa14.06□□□□□ -0.16
SMAD4-208ENST00000589706 SCAF1Q9H7N4 1312 aaKnown RBP14.05□□□□□ -0.16
SMAD4-208ENST00000589706 MSH5O43196 834 aa13.94□□□□□ -0.18
SMAD4-208ENST00000589706 ZBTB22O15209 634 aa13.82□□□□□ -0.2
SMAD4-208ENST00000589706 MAPK8IP2Q13387 824 aaPredicted RBP13.74□□□□□ -0.21
SMAD4-208ENST00000589706 DNAJC5BQ9UF47 199 aa13.7□□□□□ -0.22
SMAD4-208ENST00000589706 FOXD4L1Q9NU39 408 aa13.62□□□□□ -0.23
SMAD4-208ENST00000589706 RNF216Q9NWF9 866 aaPredicted RBP13.62□□□□□ -0.23
SMAD4-208ENST00000589706 DMRT2Q9Y5R5 561 aa13.41□□□□□ -0.26
SMAD4-208ENST00000589706 HOXD11P31277 338 aaPredicted RBP13.39□□□□□ -0.27
SMAD4-208ENST00000589706 SLC4A2P04920 1241 aa13.26□□□□□ -0.29
SMAD4-208ENST00000589706 MYCNP04198 464 aaPredicted RBP13.11□□□□□ -0.31
SMAD4-208ENST00000589706 ATXN8OSP0DMR3 200 aa13.1□□□□□ -0.31
SMAD4-208ENST00000589706 FKBP8Q14318 412 aa12.87□□□□□ -0.35
SMAD4-208ENST00000589706 AMER1Q5JTC6 1135 aaPredicted RBP12.87□□□□□ -0.35
SMAD4-208ENST00000589706 RTN4Q9NQC3 1192 aaKnown RBP12.86□□□□□ -0.35
SMAD4-208ENST00000589706 DCAF8L1A6NGE4 600 aa12.81□□□□□ -0.36
SMAD4-208ENST00000589706 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.77□□□□□ -0.373e-6■■□□□ 11.7
SMAD4-208ENST00000589706 ATF5Q9Y2D1 282 aaPredicted RBP12.72□□□□□ -0.37
SMAD4-208ENST00000589706 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.69□□□□□ -0.38
SMAD4-208ENST00000589706 HNRNPUL2Q1KMD3 747 aaKnown RBP12.69□□□□□ -0.38
SMAD4-208ENST00000589706 SAMD1Q6SPF0 538 aaPredicted RBP12.68□□□□□ -0.38
SMAD4-208ENST00000589706 SLC24A1O60721 1099 aa12.67□□□□□ -0.38
SMAD4-208ENST00000589706 U3KPZ7 1027 aaPredicted RBP12.63□□□□□ -0.39
SMAD4-208ENST00000589706 ZNF219Q9P2Y4 722 aaPredicted RBP12.44□□□□□ -0.42
SMAD4-208ENST00000589706 NISCHQ9Y2I1 1504 aa12.42□□□□□ -0.42
SMAD4-208ENST00000589706 APLP2Q06481 763 aa12.41□□□□□ -0.42
SMAD4-208ENST00000589706 SPDYE4A6NLX3 237 aa12.24□□□□□ -0.45
SMAD4-208ENST00000589706 FBXO3Q9UK99 471 aa12.24□□□□□ -0.45
SMAD4-208ENST00000589706 MKRN4PQ13434 485 aaPredicted RBP12.2□□□□□ -0.46
SMAD4-208ENST00000589706 FBLN2P98095 1184 aa12.14□□□□□ -0.47
SMAD4-208ENST00000589706 PROM2Q8N271 834 aa12.13□□□□□ -0.47
SMAD4-208ENST00000589706 TRHP20396 242 aaPredicted RBP12.12□□□□□ -0.47
SMAD4-208ENST00000589706 SPINK5Q9NQ38 1064 aaPredicted RBP12.09□□□□□ -0.47
SMAD4-208ENST00000589706 POLA2Q14181 598 aa12.06□□□□□ -0.48
SMAD4-208ENST00000589706 VASPP50552 380 aaPredicted RBP12.05□□□□□ -0.48
SMAD4-208ENST00000589706 CAPN15O75808 1086 aa12.02□□□□□ -0.49
SMAD4-208ENST00000589706 RNF39Q9H2S5 420 aa12.01□□□□□ -0.49
SMAD4-208ENST00000589706 ABCC9O60706 1549 aa11.98□□□□□ -0.49
SMAD4-208ENST00000589706 IFNLR1Q8IU57 520 aaPredicted RBP11.94□□□□□ -0.5
SMAD4-208ENST00000589706 C1QBPQ07021 282 aaKnown RBP11.9□□□□□ -0.5
SMAD4-208ENST00000589706 ZBTB12Q9Y330 459 aaPredicted RBP11.9□□□□□ -0.5
SMAD4-208ENST00000589706 PLCB2Q00722 1185 aa11.86□□□□□ -0.51
SMAD4-208ENST00000589706 ABCB7O75027 752 aa11.84□□□□□ -0.51
SMAD4-208ENST00000589706 DCAF8L2P0C7V8 631 aa11.8□□□□□ -0.52
SMAD4-208ENST00000589706 PKD2Q13563 968 aa11.79□□□□□ -0.52
SMAD4-208ENST00000589706 HAP1P54257 671 aaPredicted RBP11.71□□□□□ -0.53
SMAD4-208ENST00000589706 ZNF692Q9BU19 519 aaPredicted RBP11.71□□□□□ -0.53
SMAD4-208ENST00000589706 KLHL34Q8N239 644 aa11.7□□□□□ -0.54
SMAD4-208ENST00000589706 SPOCK2Q92563 424 aa11.69□□□□□ -0.54
SMAD4-208ENST00000589706 STAG3Q9UJ98 1225 aa11.68□□□□□ -0.54
SMAD4-208ENST00000589706 DSG3P32926 999 aa11.66□□□□□ -0.54
SMAD4-208ENST00000589706 SPDYE2BA6NHP3 402 aa11.65□□□□□ -0.54
SMAD4-208ENST00000589706 SPDYE6P0CI01 402 aa11.65□□□□□ -0.54
SMAD4-208ENST00000589706 SPDYE2Q495Y8 402 aa11.65□□□□□ -0.54
SMAD4-208ENST00000589706 OSCARQ8IYS5 282 aa11.62□□□□□ -0.55
SMAD4-208ENST00000589706 SSUH2Q9Y2M2 353 aa11.62□□□□□ -0.55
SMAD4-208ENST00000589706 ECM2O94769 699 aaPredicted RBP11.6□□□□□ -0.55
SMAD4-208ENST00000589706 PLCD3Q8N3E9 789 aa11.6□□□□□ -0.55
SMAD4-208ENST00000589706 POTEDQ86YR6 584 aa11.59□□□□□ -0.55
SMAD4-208ENST00000589706 PABPN1Q86U42 306 aaKnown RBP eCLIP11.57□□□□□ -0.56
SMAD4-208ENST00000589706 VSIG10Q8N0Z9 540 aa11.55□□□□□ -0.56
SMAD4-208ENST00000589706 MIER1Q8N108 512 aa11.54□□□□□ -0.56
SMAD4-208ENST00000589706 BBXQ8WY36 941 aaPredicted RBP11.54□□□□□ -0.56
SMAD4-208ENST00000589706 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.54□□□□□ -0.56
SMAD4-208ENST00000589706 NPM1P06748 294 aaKnown RBP eCLIP11.5□□□□□ -0.57
SMAD4-208ENST00000589706 BCANQ96GW7 911 aa11.48□□□□□ -0.57
SMAD4-208ENST00000589706 RGL2O15211 777 aa11.46□□□□□ -0.57
SMAD4-208ENST00000589706 PAXIP1Q6ZW49 1069 aaPredicted RBP11.45□□□□□ -0.58
SMAD4-208ENST00000589706 PLEKHG5O94827 1062 aa11.43□□□□□ -0.58
SMAD4-208ENST00000589706 CFAP44Q96MT7 982 aa11.43□□□□□ -0.58
SMAD4-208ENST00000589706 ZBTB47Q9UFB7 747 aaPredicted RBP11.42□□□□□ -0.58
SMAD4-208ENST00000589706 CIZ1Q9ULV3 898 aaPredicted RBP11.4□□□□□ -0.58
SMAD4-208ENST00000589706 KDM2AQ9Y2K7 1162 aa11.38□□□□□ -0.59
SMAD4-208ENST00000589706 CCDC180Q9P1Z9 1646 aa11.36□□□□□ -0.59
SMAD4-208ENST00000589706 SPRYD3Q8NCJ5 442 aa11.36□□□□□ -0.59
SMAD4-208ENST00000589706 CHGAP10645 457 aaKnown RBP11.32□□□□□ -0.6
SMAD4-208ENST00000589706 TRIM41Q8WV44 630 aa11.32□□□□□ -0.6
SMAD4-208ENST00000589706 TAOK2Q9UL54 1235 aa11.31□□□□□ -0.6
SMAD4-208ENST00000589706 PRKCSHP14314 528 aaPredicted RBP11.28□□□□□ -0.6
SMAD4-208ENST00000589706 TSHZ2Q9NRE2 1034 aa11.27□□□□□ -0.61
SMAD4-208ENST00000589706 DNAJC5Q9H3Z4 198 aa11.26□□□□□ -0.61
SMAD4-208ENST00000589706 CACNB1Q02641 598 aaPredicted RBP11.23□□□□□ -0.61
SMAD4-208ENST00000589706 GSE1Q14687 1217 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 83.4 ms